@TOME V3
(Feb 2022)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B2_114960T0_kcl93: (2019-03-28 )
YCKLYLMDGGAIQSESFWTKLGSPVELLTSPGVSQPIKTDGDCNPKIKGGSPLKKYMITGV
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------.........-------10........20.-..-----.--..-------.--.30--....---.---...40-----.---........50..-......60----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------
Y
C
K
L
Y
L
MDG-------GAIQS
E
S
F
W
T
KLG-S
P
-----
V
--
E
L
-------L--TSP--GVSQ---P---IKTD------G---DCNPKIKGGSPL-
K
K
Y
MITGV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
65.00
20%
33
- C9 -
-
1XN7
-
FEOC_ECOLI
A:
[1-78]
-------------------------------------------------------------------------------------MAS
L
I
Q
V
R
D
L
L
A
L
R
-------
G
R
M
E
A
A
Q
I
S
Q
T
L
N
-
T
P
-----
Q
--
P
M
I
N
A
M
L
Q
Q
L
--
E
S
M
--
G
K
A
V
---
R
---
I
Q
E
E
P
D
G
C
L
S
G
---
S
C
K
S
C
P
E
G
K
A
C
L
-
R
E
W
W
A
L
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
62.25
29%
-
- C- -
-
3PV2
-
?
A:
[6-439]
MPSM
A
P
V
L
K
N
I
MPA
I
V
N
V
A
V
Q
G
Y
L
P
NR
K
F
E
S
I
G
S
G
V
I
IDPNNG
V
I
I
T
N
DHVIRNAS
L
I
T
V
T
L
QDG
R
R
L
K
A
R
L
IGGDSETD
L
A
V
L
K
I
D
A
K
N
L
K
S
L
V
I
G
D
S
-------
D
K
L
E
V
G
D
F
V
V
A
I
G
-
N
P
-----
F
--
G
L
S
Q
S
----
A
--
T
F
G
--
I
V
S
A
LKN
F
---
I
Q
T
D
------
A
---
A
I
N
P
G
N
S
G
G
A
L
V
N
A
K
G
E
L
I
G
I
N
T
A
I
LVG
I
G
F
A
I
P
I
N
M
V
K
D
V
A
Q
Q
I
I
K
FG
S
I
H
R
G
L
MG
I
F
V
Q
H
LT
P
E
L
A
Q
A
M
GYPED
F
Q
G
A
L
V
SQVNPNS
P
A
E
L
A
GLKAGDIITQINDTKITQ
A
T
Q
V
K
T
T
I
S
L
LRVG
S
T
V
K
I
I
V
E
R
DN
K
P
L
T
L
S
A
V
V
T
D
I
K
S
H
E
Q
K
L
Q
S
N
N
PFLYG
L
A
L
R
A
F
E
Q
ESPPH
G
N
V
I
G
V
Q
VVGASENS
A
G
W
R
A
GIRPG
D
I
I
ISANKKPVTD
V
K
S
L
Q
T
I
A
Q
EKKK
E
L
L
V
Q
V
L
R
GP
G
S
M
Y
L
L
V
I
8
PsiBlast_PDB
61.35
32%
26
- C10 -
1MS0
2
?
A:
[119-180]
--------------------------------------------------------------------------------------------
K
L
Y
V
L
V
G
-------
S
Y
N
S
S
R
S
Y
W
T
S
H
G
-
D
A
-----
R
D
W
D
I
-------
L
--
L
A
V
--
G
E
V
T
---
K
---
S
T
A
G
------
G
---
K
I
T
A
S
I
K
W
G
S
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
61.03
32%
21
- C10 -
1MS9
-
?
A:
[119-180]
--------------------------------------------------------------------------------------------
K
L
Y
V
L
V
G
-------
S
Y
N
S
S
R
S
Y
W
T
S
H
G
-
D
A
-----
R
D
W
D
I
-------
L
--
L
A
V
--
G
E
V
T
---
K
---
S
T
A
G
------
G
---
K
I
T
A
S
I
K
W
G
S
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
60.23
22%
-22
- C11 -
-
6G0Z
-
?
B:
[160-207]
-----------------------------------------------------------------------------------------------------------
G
V
T
K
Q
Q
Q
W
I
K
V
G
-
N
A
-----
L
--
Q
L
-------
L
--
D
T
P
--
G
I
L
W
---
P
---
K
F
E
D
------
E
---
E
V
G
K
K
L
S
L
T
G
A
I
-
K
D
S
I
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
59.23
32%
30
- C10 -
3PJQ
1
?
A:
[119-180]
--------------------------------------------------------------------------------------------
K
L
Y
V
L
V
G
-------
S
Y
N
S
S
R
S
Y
W
T
S
H
G
-
D
A
-----
R
D
W
D
I
-------
L
--
L
A
V
--
G
E
V
T
---
K
---
S
T
A
G
------
G
---
K
I
T
A
S
I
K
W
G
S
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
58.96
32%
33
- C10 -
2AH2
2
?
A:
[119-180]
--------------------------------------------------------------------------------------------
K
L
Y
V
L
V
G
-------
S
Y
N
S
S
R
S
Y
W
T
S
H
G
-
D
A
-----
R
D
W
D
I
-------
L
--
L
A
V
--
G
E
V
T
---
K
---
S
T
A
G
------
G
---
K
I
T
A
S
I
K
W
G
S
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
58.85
32%
34
- C10 -
1MR5
-
?
A:
[105-166]
--------------------------------------------------------------------------------------------
K
L
Y
V
L
V
G
-------
S
Y
N
S
S
R
S
Y
W
T
S
H
G
-
D
A
-----
R
D
W
D
I
-------
L
--
L
A
V
--
G
E
V
T
---
K
---
S
T
A
G
------
G
---
K
I
T
A
S
I
K
W
G
S
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
58.80
24%
161
- C9 -
-
1IPG
-
A:
[1-85]
-----------------------------------------------------------------------------GAMGSSTSGLKT
T
K
I
K
F
Y
Y
K
D
D
I
F
A
L
M
L
K
G
D
T
T
Y
K
E
L
R
S
K
I
A
-
P
R
IDTD
N
F
--
K
L
-------
Q
--
T
K
L
FD
G
S
G
E
---
E
---
I
K
T
D
------
S
---
Q
V
S
N
I
I
Q
A
K
----
L
K
I
S
V
H
D
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
58.66
32%
34
- C10 -
3B69
2
?
A:
[119-180]
--------------------------------------------------------------------------------------------
K
L
Y
V
L
V
G
-------
S
Y
N
S
S
R
S
Y
W
T
S
H
G
-
D
A
-----
R
D
W
D
I
-------
L
--
L
A
V
--
G
E
V
T
---
K
---
S
T
A
G
------
G
---
K
I
T
A
S
I
K
W
G
S
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
58.59
32%
34
- C10 -
1S0J
1
?
A:
[119-180]
--------------------------------------------------------------------------------------------
K
L
Y
V
L
V
G
-------
S
Y
N
S
S
R
S
Y
W
T
S
H
G
-
D
A
-----
R
D
W
D
I
-------
L
--
L
A
V
--
G
E
V
T
---
K
---
S
T
A
G
------
G
---
K
I
T
A
S
I
K
W
G
S
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
58.49
32%
25
- C10 -
1MS4
-
?
A:
[105-166]
--------------------------------------------------------------------------------------------
K
L
Y
V
L
V
G
-------
S
Y
N
S
S
R
S
Y
W
T
S
H
G
-
D
A
-----
R
D
W
D
I
-------
L
--
L
A
V
--
G
E
V
T
---
K
---
S
T
A
G
------
G
---
K
I
T
A
S
I
K
W
G
S
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
58.31
32%
33
- C10 -
1MS1
1
?
A:
[119-181]
--------------------------------------------------------------------------------------------
K
L
Y
V
L
V
G
-------
S
Y
N
S
S
R
S
Y
W
T
S
H
G
-
D
A
-----
R
D
W
D
I
-------
L
--
L
A
V
--
G
E
V
T
---
K
---
S
T
A
G
------
G
---
K
I
T
A
S
I
K
W
G
S
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
57.99
32%
33
- C10 -
1S0I
1
?
A:
[119-180]
--------------------------------------------------------------------------------------------
K
L
Y
V
L
V
G
-------
S
Y
N
S
S
R
S
Y
W
T
S
H
G
-
D
A
-----
R
D
W
D
I
-------
L
--
L
A
V
--
G
E
V
T
---
K
---
S
T
A
G
------
G
---
K
I
T
A
S
I
K
W
G
S
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
57.94
22%
-5
- C11 -
-
6G12
1
?
A:
[160-207]
-----------------------------------------------------------------------------------------------------------
G
V
T
K
Q
Q
Q
W
I
K
V
G
-
N
A
-----
L
--
Q
L
-------
L
--
D
T
P
--
G
I
L
W
---
P
---
K
F
E
D
------
E
---
E
V
G
K
K
L
S
L
T
G
A
I
-
K
D
S
I
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
57.85
32%
35
- C- -
-
1MS5
-
?
A:
[105-166]
--------------------------------------------------------------------------------------------
K
L
Y
V
L
V
G
-------
S
Y
N
S
S
R
S
Y
W
T
S
H
G
-
D
A
-----
R
D
W
D
I
-------
L
--
L
A
V
--
G
E
V
T
---
K
---
S
T
A
G
------
G
---
K
I
T
A
S
I
K
W
G
S
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
57.72
22%
-2
- C11 -
-
6G15
1
?
A:
[160-207]
-----------------------------------------------------------------------------------------------------------
G
V
T
K
Q
Q
Q
W
I
K
V
G
-
N
A
-----
L
--
Q
L
-------
L
--
D
T
P
--
G
I
L
W
---
P
---
K
F
E
D
------
E
---
E
V
G
K
K
L
S
L
T
G
A
I
-
K
D
S
I
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
56.94
32%
30
- C10 -
1MS8
1
?
A:
[119-180]
--------------------------------------------------------------------------------------------
K
L
Y
V
L
V
G
-------
S
Y
N
S
S
R
S
Y
W
T
S
H
G
-
D
A
-----
R
D
W
D
I
-------
L
--
L
A
V
--
G
E
V
T
---
K
---
S
T
A
G
------
G
---
K
I
T
A
S
I
K
W
G
S
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
SP3
56.91
21%
-23
- C9 -
-
1QF6
-
SYT_ECOLI
A:
[2-62]
-------------------------------------------------------------------------------------------
P
V
I
T
L
P
D
G
-------
S
Q
R
H
Y
D
H
-----
A
V
S
P
-----
M
--
D
V
-------
A
L
D
I
G
P
--
G
L
A
K
---
A
CI
A
G
R
V
N
------
G
E
L
V
D
A
C
D
L
I
E
N
D
A
Q
L
-
S
--
I
I
T
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
56.72
32%
38
- C10 -
3OPZ
1
?
A:
[119-180]
--------------------------------------------------------------------------------------------
K
L
Y
V
L
V
G
-------
S
Y
N
S
S
R
S
Y
W
T
S
H
G
-
D
A
-----
R
D
W
D
I
-------
L
--
L
A
V
--
G
E
V
T
---
K
---
S
T
A
G
------
G
---
K
I
T
A
S
I
K
W
G
S
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------