@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : BR29_104060T0_kcl101: (2019-03-28 )
NCEITILQGESRIGFVNVPSSGKVRENIRNWWYTISCDEDCNPKISGF
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------....-...-..10........20------.....-..-.30---.........40.......
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------N
C
E
I
-
T
I
L
-QGES
R
I
G
F
V
NVPSS------
G
K
V
R
E
-
N
I
-
R
N----
W
W
Y
T
I
SCDEDCNPKISGF
3
HHSearch
82.26
40%
-140
- C10 -
-
5Z1V
-
?
C:
[14-58]
-------------------------------------------------------------------------------------------------------------
Q
V
-
T
I
L
-
K
K
G
E
R
I
T
W
V
E
V
P
K
G
------
E
S
R
E
F
-
N
I
-
R
G
----
K
Y
F
T
V
S
V
S
D
D
G
T
P
S
I
S
G
-
1
PsiBlast_PDB
79.03
44%
18
- C10 -
-
5Z1V
-
?
A:
[13-58]
------------------------------------------------------------------------------------------------------------
T
Q
V
-
T
I
L
-
K
K
G
E
R
I
T
W
V
E
V
P
K
-------
G
E
S
R
E
F
N
I
-
R
G
----
K
Y
F
T
V
S
V
S
D
D
G
T
P
S
I
S
G
-
25
Fugue
68.49
25%
-74
- C10 -
-
2MM2
-
?
A:
[1-65]
-----------------------------------------------------------------------------------------------------------
N
C
T
A
-
N
I
L
N
I
N
E
V
V
I
A
T
G
C
V
P
A
G
------
G
N
L
I
I
-
R
V
G
S
D
----
H
S
Y
L
I
R
A
T
V
S
C
G
L
S
L
N
P
S
12
HHSearch
62.73
23%
-175
- C7 -
0.29
2DMJ
-
PARP1_HUMAN
A:
[30-68]
-----------------------------------------------------------------------------------------------------------
K
C
S
E
-
S
I
P
-
K
D
S
L
R
M
A
I
M
-
V
Q
S
P
------
M
F
--
D
-
G
K
-
V
P
----
H
W
Y
H
F
S
C
F
W
K
V
G
------
8
HHSearch
61.29
23%
-159
- C7 -
0.37
3OD8
-
PARP1_HUMAN
A:
[43-82]
-----------------------------------------------------------------------------------------------------------
K
C
S
E
-
S
I
P
-
K
D
S
L
R
M
A
I
M
-
V
Q
S
P
------
M
F
--
D
-
G
K
-
V
P
----
H
W
Y
H
F
S
C
F
W
K
V
G
H
-----
9
HHSearch
60.96
23%
-143
- C7 -
0.27
3OD8
-
PARP1_HUMAN
F:
[43-82]
-----------------------------------------------------------------------------------------------------------
K
C
S
E
-
S
I
P
-
K
D
S
L
R
M
A
I
M
-
V
Q
S
P
------
M
F
--
D
-
G
K
-
V
P
----
H
W
Y
H
F
S
C
F
W
K
V
G
H
-----
13
HHSearch
58.66
26%
-118
- C7 -
0.22
1V9X
-
PARP1_ARATH
A:
[25-63]
-----------------------------------------------------------------------------------------------------------
T
C
K
S
-
V
I
N
-
K
E
N
F
R
L
G
K
L
-
V
Q
S
T
------
H
F
--
D
-
G
I
-
M
P
----
M
W
N
H
A
S
C
I
L
K
K
T
------
10
HHSearch
58.62
20%
-98
- C7 -
0.31
2N8A
-
PARP1_HUMAN
A:
[128-168]
------------------------------------------------------------------------------------------------------------
C
M
E
-
K
I
E
-
K
G
Q
V
R
L
S
K
K
M
V
D
P
E
------
K
P
-
Q
L
-
G
M
-
I
D
----
R
W
Y
H
P
G
C
F
V
K
N
R
E
-----
11
HHSearch
58.31
24%
-153
- C7 -
0.22
2N8A
-
PARP1_HUMAN
A:
[23-60]
-----------------------------------------------------------------------------------------------------------
K
C
S
E
-
S
I
P
-
K
D
S
L
R
M
A
I
-
M
V
Q
S
P
------
M
F
D
---
G
K
-
V
P
----
H
W
Y
H
F
S
C
F
W
K
V
-------
4
HHSearch
58.21
20%
-95
- C7 -
0.17
2L31
-
A:
[26-65]
------------------------------------------------------------------------------------------------------------
C
M
E
-
K
I
E
-
K
G
Q
V
R
L
S
K
K
M
V
D
P
E
------
K
P
-
Q
L
-
G
M
-
I
D
----
R
W
Y
H
P
G
C
F
V
K
N
R
------
6
HHSearch
57.88
20%
-106
- C7 -
0.18
3ODC
-
B:
[25-64]
------------------------------------------------------------------------------------------------------------
C
M
E
-
K
I
E
-
K
G
Q
V
R
L
S
K
K
M
V
D
P
E
------
K
P
-
Q
L
-
G
M
-
I
D
----
R
W
Y
H
P
G
C
F
V
K
N
R
------
15
HHSearch
57.69
24%
-143
- C7 -
0.19
4AV1
-
PARP1_HUMAN
C:
[44-81]
-----------------------------------------------------------------------------------------------------------
K
C
S
E
-
S
I
P
-
K
D
S
L
R
M
A
I
M
-
V
Q
S
P
------
M
F
--
D
-
G
K
-
V
P
----
H
W
Y
H
F
S
C
F
W
K
V
-------
5
HHSearch
57.24
20%
-108
- C7 -
0.16
3ODC
-
PARP1_HUMAN
A:
[25-64]
------------------------------------------------------------------------------------------------------------
C
M
E
-
K
I
E
-
K
G
Q
V
R
L
S
K
K
M
V
D
P
E
------
K
P
-
Q
L
-
G
M
-
I
D
----
R
W
Y
H
P
G
C
F
V
K
N
R
------
7
HHSearch
55.88
28%
-72
- C7 -
0.29
1UW0
-
A:
[20-59]
-----------------------------------------------------------------------------------------------------------
K
C
K
E
-
K
I
V
-
K
G
V
C
R
I
G
K
V
V
P
N
P
F
------
S
E
-
S
G
-
G
D
-
M
K
----
E
W
Y
H
I
K
C
M
F
E
K
-------
31
Fugue
50.57
20%
-92
- C10 -
-
3BY7
-
?
A:
[2-86]
----------------------------------------------------------------------------------------------------------K
N
I
K
I
M
R
L
V
-
T
G
E
D
I
I
G
N
I
S
E
S
Q
G
---------
L
I
-
T
I
-
K
K
----
A
F
V
I
I
P
M
-
Q
P
V
Q
L
V
L
S
P
W
41
SP3
50.45
16%
-23
- C11 -
-
2ERL
1
?
?:
[1-40]
----------------------------------------------------------------------------------------------------------D
A
C
E
Q
-
A
A
I
-
Q
C
V
E
S
-
A
C
E
S
L
C
T
E
------
G
E
D
R
T
-
G
C
-
Y
M
----
Y
I
Y
S
-----
N
C
P
P
Y
V
---
36
Fugue
48.61
27%
8
- C10 -
-
2YN5
-
?
A:
[1-283]
TPPNAPVVTYSDIVNDLIIMQGTAEAKSQLIITDSEGNTYTLTVPDNGKWSMAIPYPSEGKFTITSVDAIGNRSDDVPLDIMKEVPVISLSPDSDSGTVGDNITRDK
Q
P
T
F
-
I
I
G
-
N
L
E
S
D
V
V
V
V
Q
V
D
I
N
------
G
T
V
Y
N
-
A
E
-
K
N
ADGV
W
F
F
T
P
G
-----
T
P
L
A
D
G
S
2
PsiBlast_PDB
47.42
34%
-92
- C7 -
0.07
2DNU
-
A:
[20-45]
--------------------------------------------------------------------------------------------------------------------
Q
S
K
D
E
I
G
F
E
K
G
V
T
V
------
E
V
I
R
K
-
N
L
-
E
G
----
W
W
Y
---------------
39
Fugue
46.58
8%
-91
- C11 -
-
5TJ5
-
VA0E_YEAST
L:
[1-57]
--------------------------------------------------------------------------------------------------------YTV
V
G
V
F
-
I
V
V
-
S
A
M
S
V
L
F
W
I
M
A
P
K
N
NQAVWR
S
T
V
I
L
-
T
L
-
A
M
----
M
F
L
M
W
A
I
T
F
L
C
Q
L
H
P
L
V
A
16
HHSearch
45.79
25%
-146
* C7 *
0.25
2ENP
-
A:
[114-141]
----------------------------------------------------------------------------------------------------------------------
H
C
V
I
G
K
V
S
V
P
L
C
------
E
V
D
L
V
-
K
G
-
G
H
----
W
W
K
A
L
I
P
-----------