@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKN0: (2017-10-27 )
MIIYDGQVADNYMYQDSNQAAIVVSHSTPSLPYPFTMKPNNHSTETNTPPAIDVEKFVAKLESITSRRSKARCARSIRIALESAGADVENHPIAASDWGDTLKKIGYKEINPAFDEPQEGDIYIIHRTRNHIYGHIAGYTGSEWVSDFKQSSYDVYKDDNVTYTYYRLG
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..---.......10........20........30........40........50....-....60-.....---...70---........80..-.-.....90------------.........100...--------...-...110-.--......120.......---130------........140--.......150----.......160.......-------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
---
I
YDGQVADN
Y
M
YQDSN
Q
A
A
I
V
V
SHSTPSLPY
P
F
T
MKPNNHSTETNTPPAI
D
V
E
-
K
F
V
A
K
L
-
E
S
I
T
S
---
R
R
S
K
A
---
R
C
A
R
S
I
R
I
A
L
ES-A-GADVEN-------------HPIAA
S
D
W
G
D
--
T
L
K
--------KIG-YKEINP-A--FDEPQEG
D
I
Y
I
I
HRTR---NH-------
I
Y
G
HIAGYT
G
S
--
E
W
V
S
D
F
K
QSS----Y
D
V
YKDD
N
V
T
Y
T
Y
Y
RLG-------------------------------------------------------------
18
HHSearch
89.29
32%
-
- C2 -
-
4HZ9
-
?
A:
[2-119]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
G
I
-
S
A
A
N
Y
A
-
A
S
N
I
E
---
P
N
S
V
G
---
R
C
A
E
Y
V
R
K
A
I
E
W
-
G
-
G
I
S
L
-
Q
-------------
R
T
R
S
A
K
D
Y
G
P
--
S
L
L
--------
A
A
G
-
F
H
E
A
I
------
G
S
P
M
K
G
D
V
I
V
I
Q
P
A
P
---
G
H
-------
P
H
G
H
M
A
I
Y
D
G
S
--
H
W
I
S
D
F
K
Q
L
H
GFYP
G
P
A
Y
R
S
A
K
P
A
Y
K
T
Y
R
Y
H
-------------------------------------------------------------
2
PsiBlast_PDB
81.85
39%
-126
- C2 -
-
4HZB
-
?
A:
[19-96]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
G
---
R
C
A
E
Y
V
R
K
A
I
E
W
-
G
-
G
I
S
L
Q
R
--------------
T
R
S
A
K
D
Y
G
P
--
S
L
L
--------
A
A
G
-
F
H
E
----
A
--
I
G
S
P
M
K
G
D
V
I
V
I
Q
P
A
P
---
G
H
-------
P
H
G
H
M
A
I
Y
D
G
S
--
H
W
I
S
D
F
K
Q
------------------------------------------------------------------------------------
1
PsiBlast_PDB
66.29
39%
-
- C2 -
-
4HZ9
-
?
A:
[19-96]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
G
---
R
C
A
E
Y
V
R
K
A
I
E
W
-
G
-
G
I
S
L
Q
R
--------------
T
R
S
A
K
D
Y
G
P
--
S
L
L
--------
A
A
G
-
F
H
E
----
A
--
I
G
S
P
M
K
G
D
V
I
V
I
Q
P
A
P
---
G
H
-------
P
H
G
H
M
A
I
Y
D
G
S
--
H
W
I
S
D
F
K
Q
------------------------------------------------------------------------------------
52
Fugue
55.10
19%
-15
* C1 *
-
1QYS
-
?
A:
[3-94]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
Q
V
Q
V
N
I
D
D
N
G
K
N
F
D
Y
T
Y
T
V
T
T
E
S
-----------
E
L
Q
-
K
V
L
N
E
L
M
D
Y
I
K
K
---
Q
G
--------
A
K
R
V
R
I
S
I
T
A
-
R
---
T
K
K
E
-------------
A
E
K
F
A
A
I
L
I
K
--
V
F
A
--------
E
L
G
-
Y
N
D
I
N
V
-
T
--
F
D
----
G
D
T
V
T
V
E
G
Q
L
---------------------------------------------------------------------------------------------------------------------
23
HHSearch
53.08
14%
-104
- C2 -
-
5T1Q
-
?
A:
[247-319]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Y
P
H
G
---
Q
C
T
W
Y
V
Y
N
R
M
K
Q
-
F
-
G
T
S
I
S
G
-------------
D
L
G
D
A
H
N
W
N
N
--
R
A
Q
--------
Y
R
D
-
Y
Q
V
S
-------
H
T
P
K
R
H
A
A
V
V
F
E
A
G
Q
FGA
D
Q
-------
H
Y
G
H
V
A
F
V
E
------------------------------------------------------------------------------------------------
24
HHSearch
52.97
20%
-116
- C2 -
-
2K3A
-
?
A:
[51-114]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
T
A
G
---
Q
C
T
W
Y
V
Y
D
K
V
-----
G
G
N
I
G
S
-------------
T
W
G
N
A
N
N
W
A
S
--
A
A
S
--------
S
A
G
-
Y
T
V
N
-------
N
S
P
E
A
G
S
I
L
Q
S
T
A
------
G
-------
G
Y
G
H
V
A
Y
V
E
------------------------------------------------------------------------------------------------
34
HHSearch
51.43
20%
-115
- C2 -
-
4CGK
1
?
B:
[285-349]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
Y
---
P
I
G
E
C
T
W
G
V
K
T
L
-
A
-
P
W
A
G
-
D
-------------
Y
W
G
N
G
A
Q
W
A
T
--
S
A
A
--------
A
A
G
-
F
R
T
G
S
-------
T
P
Q
V
G
A
I
A
C
W
N
D
------
G
-------
G
Y
G
H
V
A
V
V
T
A
-----------------------------------------------------------------------------------------------
33
HHSearch
51.14
20%
-118
- C2 -
-
4CGK
-
?
A:
[285-349]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
Y
---
P
I
G
E
C
T
W
G
V
K
T
L
-
A
-
P
W
A
G
-
D
-------------
Y
W
G
N
G
A
Q
W
A
T
--
S
A
A
--------
A
A
G
-
F
R
T
G
S
-------
T
P
Q
V
G
A
I
A
C
W
N
D
------
G
-------
G
Y
G
H
V
A
V
V
T
A
-----------------------------------------------------------------------------------------------
28
HHSearch
50.88
15%
4
- C2 -
-
5D74
-
?
B:
[30-146]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
V
N
-
E
A
L
N
N
V
-
R
A
Q
V
G
SGV
S
V
G
N
G
---
E
C
Y
A
L
A
S
W
Y
E
R
M
-
I
S
P
D
A
T
V
G
LGAGVGWVSGATG
D
T
I
S
A
K
N
I
G
S
S
Y
N
W
Q
--------
A
N
G
-
W
T
V
S
T
S
-----
G
P
F
Q
A
G
Q
I
V
T
L
G
A
T
S
---
G
N
-------
P
Y
G
H
V
V
I
V
E
A
-----------------------------------------------------------------------------------------------
39
HHSearch
50.42
18%
-138
- C2 -
-
3PBI
-
RIPB_MYCTU
A:
[148-209]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
F
---
D
C
S
G
L
V
R
Y
A
F
A
G
-
V
-
G
V
L
I
-
P
-------------
R
F
S
G
D
-
Q
Y
---------------
N
A
G
--
R
H
V
---
P
--
P
A
E
A
K
R
G
D
L
I
F
Y
G
P
G
-------------
G
G
Q
H
V
T
L
Y
L
G
N
--
G
-------------------------------------------------------------------------------------------
47
Fugue
49.02
9%
-68
- C2 -
-
4BI3
-
?
A:
[1-163]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
---
P
L
Y
R
Q
L
K
S
S
H
Y
S
S
D
Y
S
S
P
G
Y
L
A
A
E
A
V
Y
A
E
I
G
Y
E
L
D
T
L
L
K
Q
N
P
G
Y
A
N
T
C
A
V
R
M
S
-
L
A
L
L
K
T
-
G
I
S
F
K
---
G
R
L
P
I
---
K
K
G
A
Y
K
G
K
T
I
E
P
-
G
-
A
K
L
L
A
D
-------------
Q
L
H
R
S
S
S
F
G
K
--
A
K
I
--------
F
F
N
-
A
P
D
A
E
K
-
G
--
I
G
N
K
K
--
G
V
V
F
F
N
K
I
T
---
N
Y
-------
D
G
G
H
I
D
L
I
E
P
E
--
N
S
L
L
T
C
H
S
H
C
----
Y
F
----
N
C
K
E
V
W
F
W
E
L
S
-------------------------------------------------------------
29
HHSearch
48.80
15%
21
- C2 -
-
5D74
-
?
A:
[30-148]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
V
N
-
E
A
L
N
N
V
-
R
A
Q
V
G
SGV
S
V
G
N
G
---
E
C
Y
A
L
A
S
W
Y
E
R
M
-
I
S
P
D
A
T
V
G
LGAGVGWVSGATG
D
T
I
S
A
K
N
I
G
S
S
Y
N
W
Q
--------
A
N
G
-
W
T
V
S
T
S
-----
G
P
F
Q
A
G
Q
I
V
T
L
G
A
T
S
---
G
N
-------
P
Y
G
H
V
V
I
V
E
A
-----------------------------------------------------------------------------------------------
26
HHSearch
48.74
15%
-23
* C2 *
-
2VOB
-
?
B:
[54-206]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
K
Y
---
Q
C
V
E
F
A
R
R
W
L
L
V
R
K
-
G
L
L
L
-
P
-------------
D
V
N
W
A
C
H
I
F
Q
--
L
K
E
VRDAATT
E
S
F
A
-
V
L
Q
V
R
N
G
T
--
T
T
K
P
E
A
D
A
L
L
V
Y
P
S
T
D
---
A
N
-------
P
V
G
H
V
G
T
I
T
E
V
GD
D
Y
V
C
V
A
D
Q
N
Y
----------------------------------------------------------------------------------
27
HHSearch
47.27
15%
-19
- C2 -
-
2VPS
-
?
A:
[54-197]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
K
Y
---
Q
C
V
E
F
A
R
R
W
L
L
V
R
K
-
G
L
L
L
-
P
-------------
D
V
N
W
A
C
H
I
F
Q
--
L
K
E
V
R
D
AATTE
S
F
A
-
V
L
Q
V
R
N
G
T
--
T
T
K
P
E
A
D
A
L
L
V
Y
P
S
T
D
---
A
N
-------
P
V
G
H
V
G
T
I
T
E
V
GD
D
Y
V
C
V
A
D
Q
N
Y
----------------------------------------------------------------------------------
49
Fugue
46.75
13%
15
- C1 -
-
1OGD
2
RBSD_BACSU
A:
[1-131]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
KHG
I
L
N
S
H
L
A
K
I
L
A
D
L
G
H
T
D
K
I
V
I
A
D
---
A
G
L
P
V
P
D
G
V
L
K
I
D
L
S
L
K
P
G
L
P
A
-------
F
Q
D
T
A
-
A
V
L
A
E
---
E
M
A
-------
V
E
K
V
I
A
A
A
E
I
-
K
-
A
S
N
Q
E
N
-------------
A
K
F
L
E
N
L
F
S
E
Q
-
E
I
E
--------
Y
L
S
-
H
E
E
F
K
L
-
L
--
T
K
D
A
K
----
A
V
I
R
T
G
E
---
F
T
-------
P
Y
A
N
C
I
L
Q
A
G
V
--
L
F
------------------------------------------------------------------------------------------
44
Fugue
45.98
16%
46
- C1 -
-
5LRT
5
DOP_ACIC1
A:
[1-500]
M
H
R
V
M
G
I
E
T
E
Y
G
I
S
V
P
HQPNAN
A
M
A
A
S
S
Q
V
V
N
A
Y
APIGAPAQG
L
A
N
V
I
L
TNG
A
R
L
Y
V
DHA
H
P
E
Y
S
T
PEVTN
P
R
D
A
V
L
W
D
K
A
G
E
R
I
M
A
E
A
A
R
R
A
A
D
LPMGWT
I
Q
L
Y
KNNTDNKG
A
S
Y
G
C
H
E
N
Y
L
M
N
RSTP
F
A
D
I
V
R
H
L
I
P
F
F
V
T
RQVFCGAGRVGIGADGRG
E
G
F
Q
LSQRADFFEVEVGLETTLKRPIINTRDEPHADPEKYRRLHVIIGDANMS
E
I
A
T
Y
L
K
L
G
T
T
A
L
V
L
A
M
---
I
E
D
G
F
L
S
Q
D
F
S
V
E
S
P
V
G
A
L
R
A
V
S
H
D
-
P
T
L
R
Y
Q
L
R
L
H
D
G
R
R
L
T
------
A
V
Q
L
Q
M
E
Y
L
E
Q
A
-
R
K
Y
V
E
---
D
R
F
G
T
DVD
D
M
T
R
D
V
L
D
R
W
E
T
-
T
-
L
V
R
L
A
D
-------------
D
P
M
Q
L
S
R
D
L
D
--
W
V
A
--------
K
L
S
I
L
E
G
Y
R
Q
-
R
--
E
N
L
P
W
S
A
H
K
L
Q
L
V
D
L
Q
---
Y
H
DVRPDRG
L
Y
N
R
L
V
A
R
G
R
M
--
N
L
L
V
D
E
A
A
V
R
----
T
A
M
H
E
P
P
N
D
T
R
A
Y
F
R
G
R
C
L
A
K
FGAEIAAASWD
S
V
I
F
D
L
PGRD
S
L
Q
R
V
P
TLEPLRGTRAHV
G
D
L
L
D
R
CRS
A
T
E
L
V
A
A
L
T
38
HHSearch
45.79
17%
-52
- C2 -
-
4F0W
1
?
A:
[60-132]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
D
---
N
A
S
G
F
V
Q
S
V
A
A
E
-
L
-
G
V
P
M
-
P
-------------
R
G
N
A
N
-
A
M
V
D
--
G
L
---------
E
Q
S
-
W
T
K
L
A
S
G
A
E
A
A
Q
K
A
A
Q
G
F
L
V
I
A
G
L
K
----
G
R
-------
T
Y
G
H
V
A
V
V
I
S
G
----------------------------------------------------------------------------------------------
53
Fugue
45.25
13%
-79
- C1 -
-
2L8K
-
A:
[1-123]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
T
A
T
L
A
A
L
T
D
D
D
F
Q
F
L
S
D
V
L
D
C
R
A
V
R
S
A
M
N
L
R
--------
A
A
L
T
S
F
Q
V
A
-
Q
Y
R
N
I
L
-
N
A
S
L
Q
---
V
D
R
D
A
---
A
R
S
R
R
L
M
A
K
L
A
D
-
F
-
A
V
E
Q
E
V
-------------
T
A
------
G
D
--
R
V
V
--------
V
I
D
-
G
L
D
R
M
A
-
H
--
F
K
D
D
-----
L
V
L
V
P
L
T
---
T
K
-------
V
V
G
--------------
G
S
R
C
T
I
----
C
D
V
V
K
E
E
-----------------------------------------------------------------------
31
HHSearch
44.98
16%
-101
- C2 -
-
4EQ8
2
?
A:
[25-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
K
D
---
N
C
S
G
F
V
Q
S
V
A
A
E
-
L
-
G
V
P
M
P
R
-------------
G
N
A
N
A
M
V
D
G
L
--
E
Q
S
--------
W
T
K
-
L
A
S
G
A
E
-
A
--
A
Q
K
A
A
Q
G
F
L
V
I
A
G
L
-
K
---
G
R
-------
T
Y
G
H
V
A
V
V
I
S
G
----------------------------------------------------------------------------------------------
22
HHSearch
43.91
17%
-110
- C2 -
-
2LRJ
-
?
A:
[10-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
T
A
G
---
Q
C
T
W
Y
V
Y
D
K
V
-----
G
G
E
I
G
S
-------------
T
W
G
N
A
N
N
W
A
A
--
A
A
Q
--------
G
A
G
-
F
T
V
N
-------
H
T
P
S
K
G
A
I
L
Q
S
S
E
------
G
-------
P
F
G
H
V
A
Y
V
E
------------------------------------------------------------------------------------------------