@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : M_BR29_EuGene_00117501: (2018-03-20 )
VRICSLALGKIINGEVTEYLEDTLQQLPGPAGNVVLEYEDFSIQLSLTKNCWPKLKRGSVVPKGYSLHVYSPTIEGHAATSAVLEGDDRLMLPGFDPLKMRVQFYEWLVGLSWKPLKKGP
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10..---------....-..20.---.....------..---30--..-------......40-.----------------...--------.....--50-....----------..--------------..-.----60---.-----........70........80.-..-....-.90..--.---..---------....100..-.-----.---...110..-----....-------...120
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
I
C
S
L
A
L
G
K
IIN---------
G
E
V
T
-
E
Y
L
E
D
---
T
L
Q
QL------PG---PA--G
N
-------
V
V
L
E
YED--
F
----------------
S
I
Q
--------
L
S
LTK--N--
C
W
PK----------LK--------------RG-S----V----V-----PK
G
Y
S
L
H
V
YSPTIEGHAA
T
S
A
-VL-EGDD-
R
L
-ML--P---GF---------
D
P
L
K
M
R
V
Q
F
-
Y
-----
E
---
W
L
V
G--LS-----WKPL-------KKGP
30
Fugue
66.63
23%
0
- C4 -
-
5GZT
10
?
B:
[1-1134]
SVHMNDSVIGVVYVDKKDTPVRIVAKGSAKVGEVIIAGSVKLEETDLTGTGFEKVVLKDLLPANAKVTLSGSFTDVDVAASANPQLNVNSGTIERLTVAASSKDAVIVLASGVKVTTLTLNIKTQIKGQGSVGTAVVNLGGKGSSFESAPGKTEGIAKDSVTTGGSFGGGGYGGGSGSSSNPVVKLISTASNNDRQLVLKFNAYGWDNNATIVLTSPAGKQTTYTYEKNSAQFAVSAPEVTFTSDKGLAAGTWLYSVKTAKGSVTSDTVTGKAFVQGKIVSYIPAWVDWAKDERGVDATKFTHLYYAFGRINNGKVVTIKEDAKWTEDPTITEADRIKRRNNPDESNLAYLTGLKAKNPNLKVLVSIGGWEAEGFSDAALTPESREVFANSALDFMNKYNLDGIDLDWEYPVYGAWGVIKSRPEDKANFTALLKLLREKLDAQSTTTNKYYELAIAAGASKTYTDSVELTKITPYLDYINLMTYDLHGGWDPATSHHTAVYSATNNQLSVDSTVKLYLNNGVPAEKLMVGGAFYSRVWQNVENKGTGLSEKAGSQAGSPGTIVYSELVNNYINKNGYTRYWDDTAKAPYLFNGSTFISYEDTASAAYKAEYIKQNNLAGFMYWEYSQDSDSHELANTIYSRLYAKSGTP
L
S
V
G
T
----
S
V
Y
A
---------
G
T
V
T
-
M
---
A
---
T
Y
T
Q
L
------
P
-----
A
--
G
T
-------
F
I
L
P
L
T
Q
--
G
----------------
T
L
K
--------------------
P
V
----------
I
S
--------------
A
S
-
D
----
V
TVSG
I
-----
P
A
G
I
T
Y
T
V
A
N
A
--
A
D
H
R
N
A
V
A
-
V
Y
-
V
N
G
G
-
T
V
-
A
S
--
N
---
V
Y
---------
D
P
I
D
V
R
V
V
V
-
K
-----
A
---
S
A
V
----
L
-----
E
A
N
M
-------
T
D
S
A
44
SP3
55.24
16%
-0
- C4 -
-
1WK0
-
A:
[1-137]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
S
G
---------
D
E
E
T
-
K
A
F
E
A
---
L
L
S
N
I
------
V
K
---
P
------------
V
A
S
D
I
Q
A
--
R
----------------
T
V
V
--------
L
T
W
S
P
PS
S
--
L
I
N
G
----------
E
T
--------------
D
E
-
S
----
S
----
V
-----
P
E
L
Y
G
Y
E
V
L
I
S
S
T
G
K
D
G
K
Y
K
S
-
V
Y
-
V
G
E
E
-
T
N
I
T
L
--
N
---
D
L
---------
K
P
A
M
D
-----
Y
-----
H
---
A
K
V
Q
--
A
E
-----
Y
N
S
I
-------
K
G
T
P
29
Fugue
53.33
22%
22
* C1 *
-
5I2X
-
ACD_HUMAN
A:
[1-150]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGR
L
V
L
R
P
W
I
R
E
L
I
L
G
SETPSSPRA
G
Q
L
L
-
E
V
L
Q
D
---
A
E
A
A
V
------
A
G
---
P
S
--
H
A
PDTSDVG
A
T
L
L
V
S
D
GT
H
----------------
S
V
R
--------
C
L
V
T
R
--
E
--
A
L
D
T
----------
S
D
WEEEFGF-------
R
G
-
T
EGRL
L
----
L
-----
L
Q
D
C
G
V
H
V
Q
V
A
--
E
G
G
A
P
A
E
F
-
Y
L
-
Q
V
D
R
-
F
S
-
L
L
--
P
---
T
E
---------
Q
P
-
R
L
R
V
P
G
-
C
-----
N
---
Q
D
L
D
--
V
Q
-----
K
K
L
Y
-------
D
C
L
E
27
Fugue
52.73
18%
7
- C4 -
-
4FPR
-
?
A:
[19-148]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Y
V
C
R
E
A
S
---
I
S
---------
G
E
I
R
--
Y
P
Q
G
TCP
T
K
T
E
A
------
L
N
---
D
C
--
N
K
-------
V
T
K
G
L
I
D
--
F
----------------
S
Q
S
HQRAWGID
M
T
A
K
V
--
Q
--
C
A
P
C
----------
K
T
--------------
T
D
-
P
WDVV
L
----
C
-----
T
C
K
I
T
A
H
R
Y
R
E
F
V
P
K
I
P
Y
S
S
---
F
-
S
S
A
P
-
G
V
-
I
F
--
R
---
Q
E
---------
T
G
L
D
---
H
D
-
P
-----
E
---
W
V
V
N
--
M
K
-----
A
R
T
R
-------
G
C
D
H
35
Fugue
52.57
18%
-75
- C4 -
-
2MQ8
-
?
A:
[1-112]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
T
V
E
V
E
V
K
I
T
A
---------
D
D
E
N
-
K
A
E
E
I
---
V
K
R
V
I
------
D
E
---
V
E
--
R
E
-------
V
Q
K
Q
Y
P
N
--
A
----------------
T
I
T
--------
R
T
L
T
R
--
D
--------------------------------
D
G
-----------------
T
V
E
L
R
I
K
V
K
A
D
T
E
E
K
A
K
S
I
I
K
-
L
I
-
E
E
R
I
-
E
E
-
E
L
--
R
---
K
R
---------
D
P
N
A
T
I
T
R
T
-
V
-----
R
---
T
E
V
G
--
S
S
-----
W
S
L
E
-------
H
H
H
H
34
Fugue
51.22
27%
36
- C5 -
-
2QUB
-
?
A:
[1-615]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SHMGIFSYKDLDENASKALFSDALAISTYAYHNIDNGFDEGYHQTGFGLGLPLTLITALIGSTQSQGGLPGLPWNPDSEQAAQEAVNNAGWSVISATQLGYAGKTDARGTYYGETAGYTTAQAEVLGKYDSEGNLTAIGISFRGTSGPRESLIGDTIGDVINDLLAGFGPKGYADGYTLKAFGNLLGDVAKFAQAHGLSGEDVVVSGHSLGGLAVNSMAAQSDANWGGFYAQSNYVAFASPTQYEAGGKVINIGYENDPVFRALDGTSLTLPSLGVHDAPHTSATNNIVNFNDHYASDAWNLLPFSILNIPTWLSHLPFFYQDGLMRVLNSEFYSLTDKDSTIIVSNLSNVTRGNTWVEDLNRNAETHSGPTFIIGSDGNDLIKGGKGNDYLEGRDGDDIFRDAGGYNLIAGGKGHNIF
D
T
Q
Q
A
L
K
N
T
E
V
A
Y
---------
D
G
N
T
-
L
Y
L
R
D
--------------------
A
--
K
G
-------
G
I
T
L
A
D
D
--
I
----------------
S
T
L
--------
R
S
K
E
T
--
S
WL
I
F
N
K
----------
E
V
--------------
D
H
-
Q
----
V
----
T
-----
A
A
G
--
L
K
S
D
S
G
L
K
A
Y
A
A
A
T
G
G
----
D
G
D
D
-
V
L
-
Q
A
--
R
---
S
H
---------
D
A
------------------
W
L
F
G
--------------------
N
A
G
N
31
Fugue
50.15
16%
-85
- C4 -
-
2E12
-
?
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
K
Y
A
P
H
V
Y
T
E
---------
Q
A
Q
I
-
A
T
L
E
H
---
W
V
K
L
L
------
D
G
---
Q
E
---
R
-------
V
R
I
E
L
D
D
------------------------------------------
G
S
----------
M
I
--------------
A
G
-
T
----
V
----
A
-----
V
R
-
P
T
I
Q
T
Y
R
D
E
-
Q
E
R
E
G
S
N
G
-
Q
L
-
R
I
D
H
-
L
D
--------------------
A
S
Q
E
P
Q
W
I
W
-
M
-----
D
---
R
I
V
A
--
V
H
-----
P
M
P
------------
38
SP3
48.06
9%
-48
- C5 -
-
1EW4
-
CYAY_ECOLI
A:
[1-106]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
D
---------
S
E
F
H
-
R
L
A
D
Q
---
L
W
L
T
I
EERLDD
W
D
---
G
D
--
S
D
-------
I
D
C
E
I
N
G
--
G
----------------
V
L
T
--------
I
T
F
E
N
------------------------------------
G
-
S
----
K
----
I
IINRQ
E
P
L
H
Q
V
W
L
A
T
K
Q
G
----
G
Y
H
F
-
D
L
-
K
G
D
E
W
I
C
-
D
R
--
S
---
G
E
---------
T
F
W
D
L
L
E
Q
A
-
A
-----
T
---
Q
Q
A
G
ET
V
S
-----
F
R
-------------
3
PsiBlast_PDB
47.82
30%
31
- C7 -
-
4Z1P
-
?
A:
[191-270]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
S
I
N
---------
N
D
T
V
-
K
L
G
D
E
---
V
T
Y
K
L
------
E
G
WVV
P
A
NR
G
Y
-------
D
L
F
E
Y
K
---
F
----------------
V
D
H
--------
L
Q
H
T
H
--
D
--
L
Y
L
K
DKVVAKVAIT
L
K
--------------
D
G
-
T
----
V
----
I
-----
P
K
G
T
N
L
V
Q
Y
T
E
T
V
---------------------------------------------------------------------------------------
2
PsiBlast_PDB
47.82
30%
31
* C7 *
-
5DZ9
-
?
A:
[191-270]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
S
I
N
---------
N
D
T
V
-
K
L
G
D
E
---
V
T
Y
K
L
------
E
G
WVV
P
A
NR
G
Y
-------
D
L
F
E
Y
K
---
F
----------------
V
D
H
--------
L
Q
H
T
H
--
D
--
L
Y
L
K
DKVVAKVAIT
L
K
--------------
D
G
-
T
----
V
----
I
-----
P
K
G
T
N
L
V
Q
Y
T
E
T
V
---------------------------------------------------------------------------------------
32
Fugue
44.34
15%
-58
- C5 -
-
5HI8
-
?
A:
[1-136]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
S
M
I
D
K
F
C
D
W
F
E
---------
G
E
F
D
-
N
W
T
Q
A
---
A
S
N
--------
P
T
---
K
W
--
A
H
-------
I
I
V
K
H
E
K
--
I
----------------
S
E
Y
--------
K
Y
H
T
S
--
S
--
R
Y
S
Y
----------
M
D
--------------
K
P
-
Y
----
R
----
E
-----
Q
T
V
D
I
E
Y
V
C
P
E
L
I
I
V
H
N
P
A
C
D
-
I
I
-
F
K
W
T
-
G
I
-
Y
F
--
E
---
G
E
SEPDCQWNG
Q
P
L
D
S
K
A
R
L
-
Y
ADEYH
T
---
W
D
V
G
--
Y
W
EGSEG
F
F
H
F
-------
K
K
N
V
1
PsiBlast_PDB
43.50
33%
-144
- C2 -
-
2EC2
-
?
A:
[26-70]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
L
T
---------
G
E
V
A
-
E
Y
T
K
E
---
V
L
R
T
I
------
A
E
---
E
L
--
G
C
-------
E
V
L
A
L
E
V
--
M
----------------
P
D
H
--------
I
H
L
F
V
--
N
--
C
P
P
R
-------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
41.14
20%
-280
- C2 -
-
5UHJ
-
?
B:
[19-37]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
A
I
D
F
-
Y
-----
V
---
N
T
L
G
--
F
E
-----
L
--------------
41
SP3
40.07
11%
32
* C3 *
-
1LQK
-
FOSA_PSEAE
A:
[1-134]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ML
T
G
L
N
H
L
T
L
A
-
V
A
D
---------
L
P
A
S
I
A
F
Y
R
D
LL-
G
F
R
L
E
------
A
R
---
W
D
--
Q
G
-------
A
Y
L
E
L
G
S
--
L
----------------
W
L
C
--------
L
S
R
E
P
--
Q
---------------------------------
Y
-
G
----
G
----
P
-----
A
A
D
Y
T
H
Y
A
F
G
I
A
A
A
D
F
A
R
F
A
A
-
Q
L
-
R
A
H
G
-
V
R
-
E
W
--
K
---
Q
N
---------
R
S
E
G
D
S
F
Y
F
-
L
-----
D
PDG
H
R
L
E
--
A
H
-----
V
G
D
L
RSRLAAC
R
Q
A
P
19
HHSearch
38.51
20%
-250
- C2 -
-
5UHJ
-
?
A:
[19-36]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
A
I
D
F
-
Y
-----
V
---
N
T
L
G
--
F
E
-----
L
--------------
8
HHSearch
37.77
17%
38
- C2 -
-
4UUX
1
?
B:
[44-161]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
E
V
-
A
P
L
A
R
---
E
V
E
E
A
------
F
A
----
R
--
A
R
-------
L
V
V
L
S
G
G
--
L
GPTPDDVTREAVALAL
G
E
P
--------
L
E
L
D
E
--
A
--
V
L
G
E
----------
I
E
AFFRARGRAMPEAN
R
K
Q
A
----
M
----
R
-----
I
P
S
A
T
W
L
---
K
N
P
R
G
T
A
P
G
W
W
-
V
R
K
G
G
K
D
-
L
V
-
L
L
--
P
---
G
----------
P
P
P
E
W
R
P
M
W
---------------------------------------
11
HHSearch
37.61
17%
-74
- C6 -
-
5CN2
-
GGA1_YEAST
A:
[56-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
----
A
----
S
-----
P
K
G
T
T
L
S
L
Q
P
Q
S
G
N
M
L
Q
S
N
S
R
D
G
I
---
K
Q
-
I
A
-
S
V
EG
I
SVN
L
G
---------
K
P
I
K
L
K
W
K
A
N
Y
-----
C
---
T
---------------------------
15
HHSearch
37.40
26%
-47
- C6 -
-
3ZY7
1
AP1G1_MOUSE
A:
[53-102]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
V
-----
P
K
T
F
Q
L
Q
L
L
S
P
S
S
S
V
V
P
A
F
N
T
G
T
I
---
T
Q
-
V
I
-
K
V
LN
P
---
Q
K
---------
Q
Q
L
R
M
R
I
K
L
T
F
-----
N
---
W
---------------------------
36
Fugue
37.12
14%
7
- C1 -
-
3JUR
-
?
A:
[5-448]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELAKKIEEEILNHVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGR
L
I
V
P
E
---
G
V
F
L
T
---------
G
P
I
H
-------------------------
L
K
--
S
N
-------
I
E
L
H
V
K
G
-------------------
T
I
K
--------
F
I
P
D
P
--
E
--
R
Y
L
P
----------
V
V
--------------
L
T
-
R
----
F
-----------
E
G
I
E
L
Y
N
Y
S
P
L
V
Y
A
L
D
C
E
N
V
-
A
I
-
T
G
S
G
------------
V
L
---------
D
G
S
A
D
N
E
H
W
-
W
-----
P
---
W
K
G
K
--
K
D
-----
F
G
W
K
-------
E
G
L
P
21
HHSearch
36.62
17%
-157
- C2 -
-
1KW3
-
BPHC_PSES1
B:
[146-169]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-
V
R
--
C
---
V
P
---------
D
T
-
A
K
A
M
A
F
-
Y
-----
T
---
E
V
L
G
--
F
V
-----
L
S
-------------