@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gi_28628824_gb_PT: (2018-03-15 )
NCTANILNINEVVIATGCVPAGGNLIIRVGSDHSYLIRATVSCGLSLNPSQSFINGESLASGGRC
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--.-.-10---........--.20----...---......--30........40...-....-.-50---....-...-.60-..------..------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NCT
A
N
I
L
--
N
-
I
-
N
----
E
V
V
I
ATGC--VP-----AG
G
---
N
L
I
I
R
V--GSDH
S
Y
L
I
R
A
T
V
SCG-LSLN-P-SQ---SFIN-GES-LAS-GG------RC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
80.16
100%
-128
- C5 -
-
2MM2
-
?
A:
[1-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
T
A
N
I
L
--
N
-
I
-
N
----
E
V
V
I
A
T
G
C
--
V
P
-----
A
G
G
---
N
L
I
I
R
V
--
G
S
D
H
S
Y
L
I
R
A
T
V
S
C
G
-
L
S
L
N
-
P
-
S
Q
---
S
F
I
N
-
G
E
S
-
L
A
S
-
G
G
------
R
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
80.16
100%
-128
- C5 -
-
2MM2
-
?
A:
[1-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
T
A
N
I
L
--
N
-
I
-
N
----
E
V
V
I
A
T
G
C
--
V
P
-----
A
G
G
---
N
L
I
I
R
V
--
G
S
D
H
S
Y
L
I
R
A
T
V
S
C
G
-
L
S
L
N
-
P
-
S
Q
---
S
F
I
N
-
G
E
S
-
L
A
S
-
G
G
------
R
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
73.31
80%
-142
- C5 -
-
2MM0
-
?
A:
[1-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
V
A
N
I
L
--
N
-
I
-
N
----
E
A
V
I
A
T
G
C
--
V
P
-----
A
G
G
---
E
L
R
I
F
V
--
G
S
S
H
S
Y
L
I
K
A
T
S
S
C
G
-
L
S
L
T
---
N
Q
---
V
F
I
N
-
G
E
S
-
V
Q
S
-
G
G
------
R
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
73.01
78%
-141
- C5 -
-
2MM0
-
?
A:
[1-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
V
A
N
I
L
--
N
-
I
-
N
----
E
A
V
I
A
T
G
C
--
V
P
-----
A
G
G
---
E
L
R
I
F
V
--
G
S
S
H
S
Y
L
I
K
A
T
S
S
C
G
-
L
S
L
--
T
-
N
Q
---
V
F
I
N
-
G
E
S
-
V
Q
S
-
G
G
------
R
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
44.06
20%
37
* C5 *
-
5A6W
4
?
C:
[11-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAIDLSRERDPNFFDHPGIPVP
E
C
F
W
F
M
F
--
K
---
N
----
N
V
R
Q
D
A
G
T
--
C
Y
-----
S
S
W
---
K
M
D
M
K
V
--
G
P
-
N
W
V
H
I
K
S
D
D
N
C
N
-
L
S
G
D
F
P
-
P
G
---
W
I
V
L
-
G
K
K
-
R
P
G
-
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
SP3
41.62
21%
-23
- C4 -
-
1CR5
-
SEC18_YEAST
A:
[5-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
R
H
L
K
V
S
N
C
P
N
N
S
Y
--
A
-
L
A
N
----
V
A
A
V
S
P
N
D
--
F
P
-----
N
N
I
---
Y
I
I
I
------
D
N
L
F
V
F
T
T
R
H
S
N
D
---
I
P
-
P
-
G
T
---
I
G
F
N
-
G
N
Q
-
R
T
W
-
G
G
------
W
S
LNQ
D
V
Q
A
K
AFDLFKY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
40.24
18%
-13
* C4 *
-
1E79
-
ATPA_BOVIN
A:
[19-94]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADTSVDL
E
E
T
G
R
V
L
--
S
-
I
G
D
----
G
I
A
R
V
H
G
L
RN
V
Q
-----
A
E
E
---
M
V
E
F
S
S
--
G
L
K
G
M
S
L
N
L
E
P
D
N
V
G
-
V
V
V
F
-
G
-
N
D
---
K
L
I
K
E
G
D
I
-
V
K
R
-
T
G
------
A
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
39.10
44%
-364
- C8 -
-
4QPK
1
CHPT_BRUA2
A:
[149-175]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
--
L
-
L
-
N
----
M
L
L
I
G
N
G
A
--
I
P
-----
R
G
G
---
S
L
A
V
R
L
E
-
G
S
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
38.80
44%
-331
* C8 *
-
4QPJ
1
CHPT_BRUA2
A:
[149-175]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
--
L
-
L
-
N
----
M
L
L
I
G
N
G
A
--
I
P
-----
R
G
G
---
S
L
A
V
R
L
E
-
G
S
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
38.42
30%
-86
- C5 -
-
5FTX
-
?
A:
[228-277]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
----
D
V
Q
L
K
V
Y
A
--
V
D
-----
A
N
G
---
N
I
V
G
D
I
--
T
N
D
V
T
I
T
S
E
A
T
D
T
N
G
-
V
I
V
N
-
A
-
S
K
---
S
T
A
N
-
G
D
T
-
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
38.41
32%
-
* C6 *
-
4C5E
-
SMBT_DROME
A:
[888-921]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
A
--
V
A
-----
A
G
Q
---
H
L
F
H
R
I
--
I
P
D
H
G
F
E
V
G
M
S
L
E
C
A
-
D
L
M
D
-
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
SP3
38.23
18%
18
- C4 -
-
1AQT
-
?
?:
[2-86]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
T
Y
H
L
D
V
V
S
AEQQM
F
S
G
L
V
E
K
I
--
Q
-
V
-
T
GSE
G
E
L
G
I
Y
P
G
H
--
A
P
L
L
T
A
I
K
P
G
---
M
I
R
I
V
K
QH
G
H
E
E
F
I
Y
L
----
S
G
G
I
L
E
V
Q
-
P
-
G
N
---
V
T
V
L
-
A
D
T
-
A
I
R
-
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
38.06
30%
-66
- C5 -
-
4UJ7
-
?
A:
[134-183]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
----
D
V
Q
L
K
V
Y
A
--
V
D
-----
A
N
G
---
N
I
V
G
D
I
--
T
N
D
V
T
I
T
S
E
A
T
D
T
N
G
-
V
I
V
N
-
A
-
S
K
---
S
T
A
N
-
G
D
T
-
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
36.53
30%
-52
- C5 -
-
4UJ8
-
?
A:
[33-82]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
----
D
V
Q
L
K
V
Y
A
--
V
D
-----
A
N
G
---
N
I
V
G
D
I
--
T
N
D
V
T
I
T
S
E
A
T
D
T
N
G
-
V
I
V
N
-
A
-
S
K
---
S
T
A
N
-
G
D
T
-
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
36.09
30%
-66
- C5 -
-
5FTY
-
?
A:
[33-82]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
----
D
V
Q
L
K
V
Y
A
--
V
D
-----
A
N
G
---
N
I
V
G
D
I
--
T
N
D
V
T
I
T
S
E
A
T
D
T
N
G
-
V
I
V
N
-
A
-
S
K
---
S
T
A
N
-
G
D
T
-
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
35.07
18%
-164
- C5 -
-
2KZK
-
ATG34_YEAST
A:
[319-340]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
M
K
V
V
--
N
-
Q
-
D
----
G
E
T
I
L
V
G
K
--
C
A
-----
D
S
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
SP3
32.58
18%
-8
- C4 -
-
1HOE
-
?
?:
[1-74]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DTTVSEPAP
S
C
V
T
L
Y
Q
--
S
-
W
-
R
----
Y
S
Q
A
D
N
G
C
--
A
E
-----
T
------
V
T
V
K
V
--
V
Y
E
D
D
----
T
E
G
L
C
--
Y
A
V
A
-
P
-
G
Q
---
I
T
T
V
-
G
D
G
Y
I
G
S
-
H
G
HAR
Y
L
A
R
C
L-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
SP3
31.91
16%
14
- C4 -
-
1H9R
-
MODE_ECOLI
A:
[78-139]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D
N
Q
L
P
G
I
I
S
H
I
E
R
G
A
-
E
-
Q
----
C
E
V
L
M
A
----
L
P
-----
D
G
Q
---
T
L
C
A
T
V
--
P
V
N
E
A
-----------
T
S
L
Q
-
Q
-
G
Q
N
V
T
A
Y
F
N
-
A
D
S
-
V
I
I
-
A
T
------
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
31.90
20%
7
- C4 -
-
1UOY
-
BUBL_PENBR
A:
[1-64]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D
T
C
G
S
G
-
Y
--
N
-
V
-
D
----
Q
R
R
T
N
S
G
C
--
K
A
-----
G
N
G
---
D
-
R
H
F
C
--
G
C
D
R
T
G
V
V
E
C
K
G
G
K
W
-
T
E
V
Q
-
D
C
G
S
---
S
S
C
K
-
G
T
S
---
N
-
G
G
A-----
T
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
31.43
33%
40
- C4 -
-
4M0M
3
?
A:
[13-740]
EQKVK
T
V
T
L
S
F
L
G
TGQHREKVHH
I
L
T
S
F
H
N
T
I
S
E
V
N
KDNPT
V
A
M
R
M
F
D
G
PGSEPKSGDSKDPIPGT
Y
I
Y
N
PKDN
S
K
I
L
I
S
P
V
I
S
Q
T
I
T
N
A
I
Q
K
L
T
GNLAGEG
I
E
H
L
L
F
E
A
V
L
Y
L
N
D
I
I
E
K
N
G
GKLPE
T
V
N
L
H
G
F
S
R
G
A
D
T
C
M
R
M
A
N
L
L
Y
Q
LYPD
I
K
V
N
L
F
L
I
D
Q
V
P
G
PGKRDDPHSYTVPPNVE
H
F
E
S
T
L
M
LHEYRPGF
D
P
Q
H
SGRYVIADPEKTK
V
V
V
K
P
Y
Y
G
E
HNTGNRVTEDPNT
N
H
T
A
I
L
L
--
N
D
D
M
N
----
R
F
C
R
E
T
G
S
--
L
P
-----
S
V
G
ISP
P
I
I
A
R
V
--
G
D
K
K
E
E
V
R
T
H
S
------
E
L
S
-
P
-
E
K
---
R
F
----
E
L
-
L
C
G
M
K
E
------
N
E
W
G
Y
A
K
LTKKYHER
S
I
L
S
K
REDYVQDSRLFVN
Q
E
H
R
E
L
F
K
Q
L
Y
P
K
S
F
N
W
F
FEKNHGGQTK
K
E
E
V
I
V
E
L
K
S
L
S
E
DPRY
E
H
F
F
S
S
L
A
K
H
F
QINENNIAGTLPEPSGIDRDEKSSFGQPPVRD
R
L
S
Y
L
Q
H
S
L
T
S
I
A
N
Y
Y
H
YHCDEKS
S
T
N
E
S
V
K
N
L
L
L
E
R
V
K
E
S
R
T
KP
D
S
E
A
I
K
H
L
E
Q
T
M
D
E
V
R
Q
I
L
E
S
K
NEKG
F
L
W
Q
Q
I
N
H
ISPN
A
R
Q
Y
C
E
Q
V
K
A
A
L
R
E
H
L
E
HNQVLS
D
T
Q
K
E
E
I
R
K
A
M
D
R
M
D
N
I
V
N
DSSKD
S
Q
Q
K
Y
R
E
I
R
R
E
V
I
E
L
N
A
K
ATTPED
D
N
Q
L
T
R
S
H
F
Q
K
A
Y
F
EGDTQKTLN
L
E
S
L
S
Q
T
L
N
Q
L
S
KAHYGETS
M
T
D
K
I
T
Q
R
L
D
G
Y
K
N
R
N
W
F
W
N
S
V
K
E
V
L
N
F
F
NIPLP
K
L
H
S
E
V
K
E
Q
I
A
D
K
L
K
E
R
L
V
D
L
K
E
K
GMGND
V
N
A
I
T
R
E
L
G
K
A
R
E
D
L
I
E
H
Y
K
K
TG
E
L
D
K
I
I
N
K
S
M
E
E
L
L
V
A
R
K