@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0030: (2017-12-14 )
MEFFGNKPFTQQPQRAITQANQLLDYKSWSEEDRKMFSQLHMREEQVLLAQDYALETARAEDLEQGLERGKVEGRAERKLFTFLDIVRQGLLTSEVASQQLGMSVSEFEALL
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-..-----------..10..--.....--------.--20----....-----..--------..30...-.-...-.40..-----......50--.-...--------.....60....----....-70.......-.80....---....90..-------......-----100..-......110---------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEFFG-NK-----------PFTQ
Q
P
--
Q
R
A
I
T
--------
Q
--
A
N
----
Q
LLD-----YK--------SW
S
E
E
D
R
-
K
-
M
F
S
-
Q
L
H
M
R
-----
E
E
Q
V
L
L
A
---Q-DYA--------LE
T
A
R
A
E
D
L
E
Q
----
G
L
E
R-GKVEG
R
A
E
R
-
K
L
F
T
F
L
D
---
I
V
R
Q
G
L
L
T
-------
S
E
V
A
S
Q
-----
Q
L-GM-
S
V
S
E
F
E
A
LL---------------------------------------------------------------------------------
11
PsiBlast_PDB
65.28
25%
-90
- C4 -
-
4BXC
1
CAPPA_FLATR
A:
[486-590]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
--------
Q
--
H
L
----
G
I
G
S
-----
Y
R
--------
E
W
S
E
E
K
R
-
Q
-
E
W
L
-
L
A
E
L
S
-----
G
K
R
P
L
I
G
---
P
-
D
L
------------
P
K
T
E
E
V
K
D
----
C
L
D
T
-
F
K
V
L
A
E
L
P
S
-
D
C
F
G
A
Y
----
I
I
S
M
A
T
S
T
-------
S
D
V
L
A
V
-----
E
L
----------------------------------------------------------------------------------------------
10
PsiBlast_PDB
64.25
25%
-89
- C4 -
-
3ZGE
-
CAPPA_FLATR
A:
[486-602]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
--------
Q
--
H
L
----
G
I
G
S
-----
Y
R
--------
E
W
S
E
E
K
R
-
Q
-
E
W
L
-
L
A
E
L
S
-----
G
K
R
P
L
I
G
---
P
-
D
L
------------
P
K
T
E
E
V
K
D
----
C
L
D
T
-
F
K
V
L
A
E
L
P
S
-
D
C
F
G
A
Y
----
I
I
S
M
A
T
S
T
-------
S
D
V
L
A
V
-----
E
L
----------------------------------------------------------------------------------------------
12
PsiBlast_PDB
64.17
25%
-86
- C4 -
-
4BXH
-
CAPPA_FLATR
A:
[486-595]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
--------
Q
--
H
L
----
G
I
G
S
-----
Y
R
--------
E
W
S
E
E
K
R
-
Q
-
E
W
L
-
L
A
E
L
S
-----
G
K
R
P
L
I
G
---
P
-
D
L
------------
P
K
T
E
E
V
K
D
----
C
L
D
T
-
F
K
V
L
A
E
L
P
S
-
D
C
F
G
A
Y
----
I
I
S
M
A
T
S
T
-------
S
D
V
L
A
V
-----
E
L
----------------------------------------------------------------------------------------------
21
Fugue
56.52
24%
8
- C6 -
-
2JVU
-
?
A:
[1-98]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
S
G
-
W
N
-----------
A
D
N
V
D
P
--
S
Q
C
I
K
--------
Q
--
S
G
----
V
Q
Y
T
-----
Y
N
--------
S
--------------------------------------------------
G
V
S
V
C
M
Q
----
G
L
N
E
-
G
K
V
R
G
V
S
V
S
-
G
V
F
Y
Y
N
D
G
T
T
S
N
F
K
G
V
V
T
PS
T
P
V
N
T
N
Q
D
I
N
K
-----
T
N
-
K
V
-
G
V
Q
K
Y
R
A
L
T
E
W
V
G
SRS--------------------------------------------------------------------------
15
Fugue
55.20
16%
-
* C6 *
-
4Q28
-
PEPL_HUMAN
A:
[1645-1754]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
H
H
-----------
H
H
H
H
S
H
M
-
R
R
S
I
V
--------
V
--
I
H
PDTG
R
E
L
S
-----
P
E
--------
E
A
H
R
A
G
L
-
I
-
D
W
N
M
F
V
K
L
R
-----
S
Q
E
C
--------
D
W
E
--------
E
I
S
V
K
G
P
N
G
--------
E
S
-
S
V
I
H
D
R
K
S
G
-
K
K
F
S
I
E
E
---
A
L
Q
S
G
R
L
T
-------
P
A
Q
Y
D
R
-----
Y
V
N
K
D
M
S
I
Q
E
L
A
V
L
V
S
G-------------------------------------------------------------------------------
5
PsiBlast_PDB
52.88
26%
-
- C4 -
-
4MHP
-
?
A:
[186-240]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
--------
R
W
S
S
H
D
--
S
-
L
Y
G
-
S
R
H
------------
L
A
---
Q
-
K
W
H
--------
E
D
R
T
S
A
E
R
L
E
S
----
C
L
E
R
-
S
E
I
A
N
Q
I
D
R
M
E
V
M
V
L
L
D
---
L
L
------------------------------------------------------------------------------------------------------------------------
17
Fugue
50.69
16%
0
- C- -
-
1FJG
-
RS13_THET8
M:
[2-126]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
I
A
G
V
E
I
-----------
P
R
N
K
R
V
--
D
V
A
L
T
YIYGIGKA
R
--
A
K
----
E
A
L
E
-----
K
T
--------
G
I
N
P
A
T
R
V
K
-
D
L
T
-
E
A
E
V
V
-----
R
L
R
E
Y
V
E
---
N
-
T
W
K
--------
L
E
G
E
L
R
A
E
V
A
A
----
N
I
K
R
-
L
M
D
I
G
-
C
Y
R
-
G
L
R
H
R
R
G
---
L
P
V
R
G
Q
R
T
-------
R
T
N
A
R
T
-----
R
K
-
G
P
-
R
K
T
V
A
G
K
K
K
APRK-----------------------------------------------------------------------------
14
Fugue
50.06
19%
20
- C5 -
-
3ZFP
1
?
A:
[1-148]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
E
P
L
Y
D
KNG
A
V
L
F
G
-
E
P
S
D
T
HPQSTLKL
P
H
P
R
G
E
--
K
E
V
I
V
--------
G
--
I
R
----
D
L
P
R
-----
K
G
--------
D
C
R
T
G
N
R
-
L
G
P
V
S
-
G
L
F
V
K
-----
P
G
P
-
V
F
Y
---
Q
-
D
Y
S
GPVYHRAP
L
E
Q
F
K
Q
A
P
M
C
E
----
V
T
K
R
I
G
R
V
T
G
-
S
D
G
-
N
L
Y
H
-
M
Y
---
V
C
T
D
G
C
I
L
-------
V
K
T
A
K
H
HHH
H
-
V
L
-
K
W
-
V
Y
N
V
L
D
S
P
I
WVTSC----------------------------------------------------------------------------
13
Fugue
49.88
19%
32
- C4 -
-
5FRF
-
RSRA_STRCO
A:
[1-108]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
S
H
M
S
A
-
G
E
-----------
P
H
E
T
D
C
--
S
E
I
L
D
--------
H
--
L
Y
----
E
F
L
D
-----
K
E
--------
M
P
D
S
D
A
V
-
K
-
F
---
E
H
H
F
E
-----
E
S
S
P
C
L
----
E
-
K
Y
G
--------
L
E
Q
A
V
K
K
L
V
K
R
----
A
A
G
Q
-
D
D
V
P
G
D
L
R
A
-
K
V
M
G
R
L
D
---
L
I
R
S
G
Q
S
V
-------
P
E
H
D
V
A
-----
A
A
-
P
S
-
S
S
A
P
Q
E
S
-----------------------------------------------------------------------------------
23
HHSearch
49.29
10%
-262
- C4 -
-
2AVU
-
FLHC_ECOLI
E:
[14-43]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
A
M
E
---
L
I
T
L
G
A
-
R
-------
L
Q
M
L
E
S
-----
E
T
-
Q
L
-
S
R
G
R
L
I
K
L
----------------------------------------------------------------------------------
9
PsiBlast_PDB
44.50
32%
-92
- C4 -
-
3ZGB
-
CAPP1_FLAPR
A:
[468-532]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
--------
Q
--
H
L
----
E
I
G
S
-----
Y
R
--------
E
W
S
E
E
K
R
-
Q
-
E
W
L
-
L
A
E
L
S
-----
G
K
R
P
L
F
G
---
S
-
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
43.84
20%
44
- C5 -
-
2QUO
-
A:
[4-126]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
I
L
D
-
L
A
-----------
A
A
T
E
R
L
N
L
T
D
A
L
N
--------
S
N
P
A
G
----
N
L
Y
D
-----
W
R
--------
S
S
N
S
Y
P
W
-
T
-
Q
K
L
-
N
L
H
L
T
I
TATG
Q
K
Y
R
I
L
A
S
KI
V
-
D
F
N
--------
I
Y
S
N
N
F
N
N
L
-
V
----
K
L
E
Q
-
S
L
G
D
G
V
K
D
H
-
Y
V
D
I
S
L
D
----
A
G
Q
Y
V
L
V
-------
M
K
A
N
S
S
-----
Y
S
-
G
N
-
Y
P
Y
S
I
L
F
Q
K
F--------------------------------------------------------------------------------
2
PsiBlast_PDB
42.94
34%
-112
- C4 -
-
1JQN
-
CAPP_ECOLI
A:
[417-451]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-----
Y
E
--------
S
W
S
E
A
D
K
-
Q
-
A
F
L
-
I
R
E
L
N
-----
S
K
R
P
L
L
P
---
R
-
N
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
42.73
34%
-99
- C4 -
-
1FIY
-
CAPP_ECOLI
A:
[417-452]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-----
Y
E
--------
S
W
S
E
A
D
K
-
Q
-
A
F
L
-
I
R
E
L
N
-----
S
K
R
P
L
L
P
---
R
-
N
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
42.07
15%
63
- C4 -
-
4NY2
1
?
A:
[5-408]
PK
G
T
I
Y
L
T
F
D
DGPV
N
A
S
V
E
V
I
K
V
L
N
Q
G
G
V
K
A
T
F
YFNAWHLDGIGDENEDR
A
L
E
A
L
K
L
A
L
D
S
G
H
I
V
G
N
HSYDHMIHNCVEEFGPT
S
G
A
D
C
N
A
T
GNHQIHSYQD
P
V
R
D
A
A
S
F
E
Q
N
L
I
T
L
E
K
Y
L
PTIRSYPNYKGYE
L
A
R
L
P
YTNGWRVTKH
F
Q
A
D
GLCATSDNLKPWEPG
Y
V
C
D
PANPS
N
S
V
K
A
S
I
Q
V
Q
N
I
L
A
N
Q
G
Y
Q
T
H
G
W
DVDWAPENWGIPMPANSLTE
A
V
P
F
L
A
Y
V
D
-
K
A
-----------
L
N
S
C
S
P
--
T
T
I
E
P
--------
I
--
N
S
----
K
T
Q
E
-----
F
P
--------
C
G
T
-----------
P
L
H
-
A
-----
D
K
V
I
V
L
T
---
H
-
D
F
L
--------
F
E
D
G
K
-------------
R
-
G
M
G
A
T
Q
N
L
P
-
K
L
A
E
F
I
R
---
I
A
K
E
A
G
Y
V
-------
F
D
T
M
D
N
YTPRW
S
V
-
G
K
-
T
Y
Q
A
G
E
Y
V
L
Y
QG
V
V
Y
K
A
V
I
S
H
T
A
Q
QDWAPSSTSSLWTNADPATNWTLNVSYEQG
D
I
V
N
Y
KG
K
R
Y
L
V
S
V
P
H
V
S
Q
QDWTPDTQNTL
F
T
A
L
E
L
19
Fugue
41.06
22%
84
* C5 *
-
2EO1
-
A:
[1-102]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
S
S
G
S
S
G
K
V
V
F
A
-
K
E
-----------
Q
P
A
H
R
E
--
V
Q
A
E
A
--------
G
--
A
S
----
A
T
L
S
-----
C
E
V
AQAQ
T
E
V
T
W
Y
K
D
G
K
-
K
-
L
S
S
-
S
S
K
V
R
-----
V
E
A
V
----------------------------------
G
C
T
R
-
R
L
V
V
Q
Q
A
G
Q
-
A
-----------
E
A
G
E
Y
S
-------
C
E
A
G
G
Q
-----
Q
L
-
S
F
-
R
L
Q
V
A
G
Q
C
F
G--------------------------------------------------------------------------------
1
PsiBlast_PDB
40.73
34%
-82
- C4 -
-
1QB4
-
CAPP_ECOLI
A:
[417-452]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-----
Y
E
--------
S
W
S
E
A
D
K
-
Q
-
A
F
L
-
I
R
E
L
N
-----
S
K
R
P
L
L
P
---
R
-
N
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
36.94
26%
3
- C4 -
-
4MHY
1
?
A:
[159-213]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
--------
R
W
S
S
H
D
--
S
-
L
Y
G
-
S
R
H
------------
L
A
---
Q
-
K
W
H
--------
E
D
R
T
S
A
E
R
L
E
S
----
C
L
E
R
-
S
E
I
A
N
Q
I
D
R
M
E
V
M
V
L
L
D
---
L
L
------------------------------------------------------------------------------------------------------------------------
16
Fugue
36.23
13%
33
- C4 -
-
3WZM
-
?
A:
[15-278]
---------------------------------------------------------------------------------------------M
R
T
R
S
T
I
S
T
PNG
I
T
W
Y
Y
E
Q
E
G
T
G
P
D
V
V
L
V
P
D
GLGECQMF
D
S
S
V
S
Q
I
A
A
Q
GFR
V
T
T
F
D
M
PGMSRSAKAPPETYTEVT
A
Q
K
L
A
S
Y
V
I
S
V
L
D
A
L
DIK
H
A
T
V
W
G
C
A
S
G
A
S
T
V
V
A
L
L
L
G
YPDRIR
N
A
M
C
H
ELPTKL
L
D
H
L
S
-
N
T
-----------
A
V
L
E
D
E
--
E
I
S
K
I
--------
L
--
A
N
----
V
M
L
N
DVSGG
S
E
--------
A
W
Q
A
M
G
D
-
E
-
V
H
A
-
R
L
H
K
N
-----
Y
P
V
W
A
R
G
---
Y
P
R
T
I
--------
P
P
S
A
P
V
K
D
L
E
A
LRGK
P
L
D
W
-
T
V
G
A
A
T
P
T
E
-
S
F
F
D
N
I
V
---
T
A
T
K
A
G
V
N
-------
I
G
L
L
P
G
-----
M
H
-
F
P
-
Y
V
S
H
P
D
V
F
A
K
Y
V
V
E
T
T
Q
K
H
L----------------------------------------------------------------------
8
PsiBlast_PDB
36.22
25%
-74
- C4 -
-
1J7G
-
DTD_HAEIN
A:
[40-89]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
A
D
K
--------
L
--
A
E
----
K
V
L
N
-----
Y
R
--------
I
F
S
D
E
N
D
-
K
-
M
N
L
-
N
V
Q
Q
A
-----
Q
G
E
L
L
I
V
---
S
-
Q
F
T
--------
L
----
A
A
D
T
Q
K
----
G
L
-------------------------------------------------------------------------------------------------------------------------------------------------