@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0116: (2017-12-15 )
MGIKMEKIFVIIFFVCLFISSITFLAYDFVSEEIKKLIIWMNVVFLILIIAMIIYPKLRK
Atome Classification :
(19 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20....--..------..30......--..40........50........60------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGI
K
M
E
K
I
F
V
I
I
F
F
V
C
L
F
I
S
S
I
T
F
L
--
A
Y
------
D
F
V
S
E
E
I
K
K
L
--
I
I
W
M
N
V
V
F
L
I
L
I
I
A
M
I
IYPKLRK-------------------------------------------------------------------------
16
Fugue
70.36
23%
-145
- C4 -
-
4J5T
4
CWH41_YEAST
A:
[1-811]
A
E
F
M
E
E
Y
Q
K
F
T
N
E
S
L
LWAPYRSNCY
F
G
M
R
P
R
YVHESPL
I
M
G
I
M
W
F
N
SLSQDGLHSLRHFATPQDKLQ
K
Y
G
W
EVYDPR
I
G
G
K
E
V
F
I
D
EKNNLN
L
T
V
Y
F
V
K
S
KNGE
N
W
S
V
R
V
Q
G
E
P
LDPKRPSTAS
V
V
L
Y
F
S
QNGGEIDG
K
S
S
L
A
M
IGHDGPN
D
M
K
F
F
G
Y
S
KEL
G
E
Y
H
L
T
V
K
D
N
F
G
H
Y
F
KNPEYETMEVAPGSDCS
K
T
S
H
L
S
L
Q
I
P
DKEVWK
A
R
D
V
F
Q
S
L
V
S
D
S
I
R
D
I
L
ERPADL
I
P
S
V
L
TIRNLYNFNPGN
F
H
Y
I
Q
K
T
F
D
LTKKD
G
F
Q
F
D
I
T
Y
N
K
LGTTQSIST
R
E
Q
V
T
E
L
I
T
W
S
L
N
E
I
N
A
R
F
D
K
Q
F
S
F
G
EGPDSIES
V
E
V
K
R
R
F
A
L
E
T
L
S
N
L
L
G
G
I
G
Y
F
Y
G
N
Q
L
I
D
RETEFDESQFTEIKLLN
A
K
E
E
G
P
F
E
L
F
T
S
V
PSRGFFPRGF
Y
W
D
E
G
F
H
L
L
Q
I
M
E
Y
D
F
D
L
A
F
E
I
L
A
S
W
F
E
M
IEDDSGWIAR
E
I
I
L
G
N
E
A
R
S
K
VPQEFQVQNPNIANPP
T
L
L
L
A
F
S
E
M
L
S
R
A
I
E
N
I
GDFMTNNLEAN
P
G
L
L
T
E
Y
A
K
K
I
Y
P
K
L
L
K
H
Y
N
W
F
R
K
S
Q
TGLIDEY
E
E
I
L
E
D
E
GIWDKIHKNEVYRWVGRTFTHCLPSGMDDYPRAQPPDVAELN
V
D
A
L
A
W
V
G
V
M
T
R
S
M
K
Q
I
A
H
V
L
KL
T
Q
D
E
Q
R
Y
A
Q
I
E
Q
E
V
V
E
N
L
D
L
LHWSENDN
C
Y
C
D
I
S
I
DPEDDE
I
R
E
F
VCHEGYVSV
L
P
F
A
L
KLIPK
N
S
P
K
L
E
K
V
V
A
L
M
S
D
P
E
K
I
F
S
D
Y
G
L
L
--
S
L
SRQD--
D
Y
F
G
K
D
E
N
Y
W
R
G
P
I
W
M
N
I
N
Y
L
C
L
D
A
M
R
Y
Y
Y
P
E
V
I
L
DVAGEAS
N
A
K
K
L
Y
Q
S
L
K
I
N
L
S
N
N
I
Y
K
V
W
E
EQGYCYE
N
Y
S
PIDGHGTGAEHFTGWTAL
V
V
N
I
L
G
R
F
RS
H
H
H
H
HH
5
HHSearch
48.22
22%
-379
- C1 -
-
5T4O
-
ATPF_ECOLI
I:
[20-28]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
M
K
Y
V
W
P
P
L
---------------------------------------------------------------------------
18
Fugue
46.23
27%
-200
- C4 -
-
4WOL
2
TYOBP_HUMAN
A:
[1-33]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
------
S
T
V
S
P
G
V
L
A
G
--
I
V
V
G
D
L
V
-
L
T
V
L
I
A
L
A
V
Y
F
L
G
R
L
-------------------------------------------------------------------------
15
Fugue
41.49
24%
-92
- C4 -
-
1PFI
1
CAPSD_BPPF1
A:
[1-46]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
I
D
T
S
A
V
E
S
A
I
T
D
G
-----------------------
Q
G
D
M
K
A
I
--
G
G
Y
I
V
G
A
L
V
I
L
A
V
A
G
L
I
Y
S
M
L
R
K
A------------------------------------------------------------------------
13
HHSearch
40.76
22%
-258
- C4 -
-
4QNC
3
SWEET_LEPBP
A:
[36-72]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
M
Y
I
M
F
F
L
G
V
V
L
W
F
--
V
Y
------
G
I
L
R
S
D
L
--
P
--
I
I
L
A
N
V
V
T
L
F
F
V
T
-----------------------------------------------------------------------------------
4
HHSearch
38.39
25%
-485
- C4 -
-
5H1Q
-
INX6_CAEEL
A:
[273-292]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
K
L
F
I
F
L
W
F
W
L
V
F
V
A
V
V
S
T
-----------------------------------------------------------------------------------------------------------------------
11
HHSearch
38.10
17%
-323
- C4 -
-
2BG9
-
ACHA_TORMA
A:
[404-427]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
I
D
H
I
L
L
C
V
F
M
L
I
C
I
I
G
T
V
S
V
F
--
A
-------------------------------------------------------------------------------------------------------------------
8
HHSearch
37.59
25%
-341
- C4 -
-
5SV1
-
EXBD_ECOLI
Y:
[22-38]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
F
I
D
V
M
L
V
L
L
I
I
F
M
V
A
A
------------------------------------------------------------------------------
23
Fugue
35.19
3%
-194
- C4 -
-
3DGP
-
TFB2_YEAST
A:
[447-508]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
D
R
V
I
T
Y
E
G
S
L
Y
S
D
F
E
T
S
Q
E
Y
--
N
L
------
L
S
K
Y
A
Q
D
I
G
V
--
L
L
W
K
D
D
K
K
K
K
F
F
I
S
K
E
G
N
S
Q
V
L
D
F
A
K
R
K--------------------------------------------------------------------
22
Fugue
34.26
17%
-165
- C4 -
-
3H8A
-
RNE_ECOLI
E:
[1-28]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
S
P
M
P
L
--
T
V
------
A
A
A
S
P
E
L
A
S
G
--
K
V
W
I
R
Y
P
I
V
R
--------------------------------------------------------------------------------------
24
Fugue
32.07
8%
-39
* C4 *
-
4DV7
-
RSHX_THET8
U:
[2-25]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
G
D
R
R
T
R
R
G
--
K
I
W
R
G
T
Y
G
K
Y
R
P
R
K
----------------------------------------------------------------------------------
6
HHSearch
31.84
22%
-288
- C2 -
-
5T4P
-
ATPF_ECOLI
J:
[20-28]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
M
K
Y
V
W
P
P
L
---------------------------------------------------------------------------
17
Fugue
30.77
13%
-105
- C3 -
-
2C1M
-
NUP50_MOUSE
B:
[1-46]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
K
R
V
A
E
K
E
L
T
D
R
N
W
D
E
E
D
E
V
E
E
M
G
--
T
F
------
S
V
A
S
E
E
V
M
K
----------------
N
R
A
V
K
K
A
K
R
R
-------------------------------------------------------------------------
19
Fugue
30.50
20%
162
- C4 -
-
5U1T
-
B:
[1-117]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
I
E
I
A
P
------------
Q
R
Q
E
P
L
--
P
Y
V
P
EGYS
P
F
Q
Q
D
D
I
E
K
L
--
K
T
F
N
S
P
Y
K
L
D
L
D
K
V
D
L
L
P
L
E
Q
I
E
GLD
P
E
E
L
E
D
L
V
T-------------------------------------------------------------
14
HHSearch
30.40
9%
-339
- C4 -
-
2BG9
-
?
E:
[444-466]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
I
D
K
A
C
F
W
I
A
L
L
L
F
S
L
G
T
L
A
I
F
----------------------------------------------------------------------------------------------------------------------
20
Fugue
29.25
17%
-4
- C4 -
-
1R7D
-
?
A:
[1-31]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
S
W
L
R
D
I
W
------
D
W
I
C
E
V
L
S
D
F
--
K
T
W
L
K
A
K
L
M
P
Q
L
------------------------------------------------------------------------------------
10
HHSearch
28.97
22%
-100
- C4 -
-
2KRH
-
A:
[5-22]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
--
A
E
------
E
H
I
Y
R
E
I
M
E
L
--
C
F
V
I
R
-------------------------------------------------------------------------------------------
1
HHSearch
28.64
21%
-
- C4 -
-
4PIR
-
5HT3A_MOUSE
D:
[424-447]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
V
L
D
R
L
L
F
R
I
Y
L
L
A
V
L
A
Y
S
I
T
L
V
----------------------------------------------------------------------------------------------------------------------
12
HHSearch
27.11
9%
-221
- C4 -
-
2BG9
-
?
C:
[452-474]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
D
R
L
S
M
F
I
I
T
P
V
M
V
L
G
T
I
F
I
F
--
V
-------------------------------------------------------------------------------------------------------------------