@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0126: (2017-12-15 )
MIYKVFYQETKERSPRRETTRTLYLDIDASSELEGRITARQLVEENRPEYNIEYIELLSDKLLDYEKETGAFEITEF
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10..-......20.......------------.30-.------..-----...---..40-.......--.50-...-----...---...60........70......----------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Y
K
V
F
Y
Q
E
T
KER-SPRRET
T
R
T
L
Y
L
D
ID------------ASS-E------LE-----G
R
I
---
T
A
R
Q
-
L
V
E
ENRP--EY--
N
I
E
-----
Y
I
E
---
L
L
S
D
K
L
LDYEKETG
A
F
EITEF----------------------------------------------------------------------------
1
PsiBlast_PDB
57.97
49%
-
- C4 -
-
4NJC
-
?
A:
[9-65]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
K
V
F
Y
Q
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D
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E
-
A
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--
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------------
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-
E
------
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-----
V
R
------
R
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-
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--
E
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---
I
--
N
I
E
-----
Y
I
Q
---
P
L
E
G
A
H
L
E
Y
E
---------------------------------------------------------------------------------------
16
HHSearch
54.38
43%
-
- C4 -
-
4NJC
-
?
A:
[8-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
F
K
V
F
Y
Q
E
D
A
D
E
-
A
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V
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E
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T
K
T
M
Y
I
E
A
E
------------
S
E
------------------
R
---
D
V
R
R
-
K
L
E
G
R
----
P
I
--
N
I
E
-----
Y
I
Q
---
P
L
E
G
A
H
L
E
Y
E
---------------------------------------------------------------------------------------
8
Fugue
53.40
24%
10
- C3 -
-
5FQ3
-
?
A:
[15-213]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F
V
T
L
E
R
E
G
DE
K
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KG
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EP
G
Y
Y
A
E
M
NGEDITES
V
Q
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K
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SVDVN
T
P
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A
A
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-
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------------
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-
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------
L
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S----
G
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---
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-----------
V
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---
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LGGWYDQRAGYGPDY
A
M
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K
F
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N
DDN
T
I
T
P
L
E
S
Y
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A
GWGDSMDQMTN
T
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D
PATG
T
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7
Fugue
52.05
27%
52
- C2 -
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5IWZ
-
SYCP2_MOUSE
A:
[4-397]
M
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V
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P
D
LQQ
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KNDF
K
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A
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Q
IDICED
V
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F
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KNIFILGQA
G
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EIILNQDE
A
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DSRVN
F
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IN
Q
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DVGD
Y
E
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V
E
A
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C
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M
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T
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R
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A
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E
W
F
SM
D
F
I
A
N
A
F
K
E
IKDCE
F
E
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D
C
R
I
F
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N
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N
G
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GDKRR
V
Y
T
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P
C
L
S
A
F
L
G
K
Y
E
L
Q
-
I
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E
F
W
I
D
F
N
------------
L
G
S
H
T
------
L
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-----
F
Y
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---
E
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G
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L
L
F
Y
F
DESLE
I
T
N
V
T
K
K
V
FGGLEHH----------------------------------------------------
5
PsiBlast_PDB
49.57
35%
134
- C4 -
-
3KBT
-
SPTB1_HUMAN
A:
[1699-1763]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
-
D
------
L
E
-----
Q
W
I
---
S
E
K
E
-
L
V
A
S
S
-
P
--
E
M
GQ
D
F
D
-----
H
V
T
---
L
L
R
D
K
F
R
D
F
A
R
E
T
G
A
I
---------------------------------------------------------------------------------
4
PsiBlast_PDB
48.01
35%
146
- C4 -
-
3KBU
-
SPTB1_HUMAN
A:
[119-183]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
-
D
------
L
E
-----
Q
W
I
---
S
E
K
E
-
L
V
A
S
S
-
P
--
E
M
GQ
D
F
D
-----
H
V
T
---
L
L
R
D
K
F
R
D
F
A
R
E
T
G
A
I
---------------------------------------------------------------------------------
15
HHSearch
47.82
43%
-
- C4 -
-
4NJC
-
?
H:
[8-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
F
K
V
F
Y
Q
E
D
---------
K
T
K
T
M
Y
I
E
A
E
------------
S
E
------------------
R
---
D
V
R
R
-
K
L
E
G
R
----
P
I
--
N
I
E
-----
Y
I
Q
---
P
L
E
G
A
H
L
E
Y
----------------------------------------------------------------------------------------
9
Fugue
47.17
15%
59
- C4 -
-
4NSS
-
?
A:
[29-148]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
A
K
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A
V
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A
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A
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S
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P
A
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A
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A
E
A
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R
L
T
A
R
------------
T
L
A
-
A
V
A
PGAS
V
E
-----
V
R
V
P
PF
V
A
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C
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-
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A
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S
G
S
RAAEVAHWLPVVRIDP------------------------------------------------------------
2
PsiBlast_PDB
45.16
36%
159
- C4 -
-
3F57
-
SPTB1_HUMAN
A:
[1699-1764]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
-
D
------
L
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-----
Q
W
I
---
S
E
K
E
-
L
V
A
S
S
-
P
--
E
M
GQ
D
F
D
-----
H
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---
L
L
R
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K
F
R
D
F
A
R
E
T
G
A
----------------------------------------------------------------------------------
13
Fugue
45.07
20%
73
- C3 -
-
2WBX
-
CAD23_MOUSE
A:
[1-102]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
Q
V
N
R
L
P
F
F
TN
H
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T
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P
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S
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E
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A
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-
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------
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A
VEPDT
G
V
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---
W
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--
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F
--
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F
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Q
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G
D
-----------------------------------------------------------------------------
22
HHSearch
43.43
32%
-161
- C3 -
-
3VOQ
-
SIN1_HUMAN
A:
[452-473]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
K
L
T
Y
L
S
N
H
--------
D
Y
K
H
L
Y
F
E
S
D
------------
A
A
-------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
43.39
36%
166
- C- -
-
3EDU
-
SPTB1_HUMAN
A:
[1699-1754]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
-
D
------
L
E
-----
Q
W
I
---
S
E
K
E
-
L
V
A
S
S
-
P
--
E
M
GQ
D
F
D
-----
H
V
T
---
L
L
R
D
K
F
R
D
F
A
R
E
T
G
A
----------------------------------------------------------------------------------
23
HHSearch
43.05
32%
-153
* C3 *
-
3VOQ
-
SIN1_HUMAN
B:
[452-473]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
K
L
T
Y
L
S
N
H
--------
D
Y
K
H
L
Y
F
E
S
D
------------
A
A
-------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
42.20
10%
-42
- C3 -
-
1PFS
-
G5P_BPPF3
A:
[1-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
I
Q
I
T
F
T
D
S
V
R
Q
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A
K
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N
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F
Q
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G
F
L
------------
H
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-
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------
K
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---
Q
C
Q
F
-
F
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AG
S
Y
--
Q
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-----
Y
R
I
---
N
V
N
N
G
R
P
E
L
A
F
D
F
K
A
M
K
R
A
------------------------------------------------------------------------------
17
HHSearch
41.55
16%
-232
* C4 *
-
3H7H
-
B:
[53-71]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
Y
V
E
A
Y
------------
K
Q
------------------
T
---
H
V
K
Q
-
A
I
E
G
V
-----------------------------------------------------------------------------------------------------------------------
19
HHSearch
40.07
5%
-373
- C4 -
-
2EXU
-
A:
[150-169]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
I
Y
I
E
A
P
------------
K
Q
------------------
S
---
V
I
E
K
-
F
C
N
G
V
-----------------------------------------------------------------------------------------------------------------------
21
HHSearch
27.78
33%
-
- C5 -
-
5B0U
-
LUCI_OPLGR
A:
[75-86]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
F
K
V
V
Y
P
V
D
D
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
27.04
16%
19
- C1 -
-
1M06
3
J_BPAL3
J:
[1-24]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
A
R
R
S
-
P
S
R
R
K
G
A
R
L
W
Y
V
G
G
S
------------
Q
F
-------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
26.58
18%
-7
- C4 -
-
1FCT
-
?
?:
[1-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
M
A
------------
M
R
S
-
T
------
F
A
-----
A
R
V
---
G
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P
-
A
V
R
G
A
R
P
--
A
S
--
R
M
S
-----
C
M
A
----------------------------------------------------------------------------------------------------
20
HHSearch
26.32
33%
-
* C5 *
-
5IBO
1
LUCI_OPLGR
A:
[80-91]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
F
K
V
V
Y
P
V
D
D
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------