@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1886: (2018-01-21 )
MVMSLITHRRFISCNENIKHYKRLIDKAEKCVNDLMAELNSVITTVTGIGNRLGAVILAEIQNIHAFDNPAQLQAFAGLDSSIYQSGQIDLAGRMIKRGSPHLR
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10--.....-..--.20--....--.....30..-......-----40----..-----......50........60.---.----...--.--------.--.--70-------------------------------.........80......----.--.90.........100..------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
V
M
S
L
I
THR
R
F
--ISCNE-
N
I
--
K
H
---
Y
K
R
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--
I
D
K
A
E
K
C
V
N
-
D
L
M
A
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-----
N
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----
V
I
-----
T
T
V
T
G
IG
N
R
L
G
A
V
I
L
A
E
I
Q
---
N
----IHA--F--------D--
N
--
P
--------------------------------
A
Q
L
Q
A
F
AGL
D
S
S
I
YQSG----Q--
I
D
-
L
A
G
R
M
I
KRGSPHLR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
55.19
22%
20
- C3 -
-
4DQJ
2
?
A:
[14-150]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
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R
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-
A
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--
I
G
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A
S
Y
Y
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-
F
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P
I
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-----
N
F
----
V
V
AG
G
F
E
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F
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R
Q
T
W
D
---
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----
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--
L
--------
G
--
R
NL
P
--------------------------------
A
F
E
E
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N
A
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L
Y
A
I
G
----
F
--
L
Y
-
L
E
N
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A
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E
A
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G
R
VFT
H
E
I
A
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N
QG
A
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A
A
E
Q
Y
L
T
S
GRLVYP------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
54.32
23%
24
* C2 *
-
4INO
-
?
A:
[34-335]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q
E
V
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D
YF
G
E
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PVS
K
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GSFAE
V
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A
M
F
HTWDRVVGIS
D
Y
A
F
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D
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A
TLKDPER
I
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SDHAAALN
V
E
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SPD
L
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VGN
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--
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K
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---
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----
V
E
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--
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--------
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--
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--
A
--------------------------------
N
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A
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----
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--
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I
V
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E
NPE
I
I
F
I
W
WISPLS
P
E
D
V
L
N
NPKFATI
K
A
I
K
N
KQ
V
Y
K
L
P
TMDIGGPR
A
P
L
I
S
L
F
I
A
L
K
A
HPEAFKGVD
I
N
A
I
V
K
D
Y
Y
K
V
V
FDLNDAEVEPFLWH-------------------------------------------------------------------------------------------------
8
HHSearch
54.29
13%
-168
- C4 -
-
2EDU
-
A:
[39-83]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
----
D
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-----
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--------
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--
V
--------------------------------
E
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M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
53.36
16%
64
- C3 -
-
2OCE
-
?
A:
[2-730]
D
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LPSGRVQ
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A
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GST
V
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YRKEVTGSLD
D
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GKLT
P
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ADT
K
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LPYKQKRRT
K
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A
GL
G
A
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A
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A
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PTLV
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VDAEKGFAD
V
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PGKEQEGAKFSDYF
E
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LKSAP
S
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GEEAP
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GLSNQGRAA
D
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AAPAGP
R
A
T
L
G
L
DPGLRT
G
V
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V
A
V
V
D
ATGKLL
D
T
A
T
V
Y
PHAPKNQ
W
D
Q
T
L
A
V
L
A
A
L
C
A
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H
QVE
L
I
A
I
G
NGTA
S
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L
A
G
E
L
I
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K
Y
PGMK
L
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I
M
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EAG
A
S
V
Y
S
A
S
E
L
A
A
K
E
F
PELD
V
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A
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EP
K
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--
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----
Q
L
--
K
L
---
A
R
S
L
--
D
A
V
V
E
D
C
V
N
-
A
V
G
V
D
V
-----
N
T
AS
A
A
L
L
-----
A
R
I
S
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L
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A
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N
I
V
A
H
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---
A
----
N
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A
--
F
--------
R
--
T
--
R
--------------------------------
D
E
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V
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R
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G
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A
AGF
L
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--
V
M
-
N
G
D
N
P
L
D
A
S
A
V
H
P
E
T
Y
P
L
V
Q
R
IAADTERDIRSLIGDSAFLKRLDPKKFTDETFGLP
T
V
T
D
I
L
K
E
L
DKPGRDPRPEFKTAEFQEGVESLKDLKP
G
M
V
L
E
G
V
V
TNVTNF
G
A
F
V
D
IGVH
Q
D
G
L
V
H
ISALSEKFVKDPYEVVKAG
D
I
V
K
V
K
VMEVDIPRN
R
V
G
L
S
MRMSDTPG-------------------------------------------
23
Fugue
52.63
23%
42
- C2 -
-
4PG7
4
?
A:
[20-446]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H
M
K
K
L
N
I
A
L
LGLG
T
V
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Q
I
Q
D
T
LN
K
D
I
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IK
H
I
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RDKSKKRP
L
N
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S
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Y
H
L
T
ED
V
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E
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DDSLD
I
I
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E
VMGGI
E
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--
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---
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--
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A
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-
A
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E
A
SVAGG
P
N
----
N
I
-----
S
K
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M
G
I
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G
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N
F
I
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M
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---
K
EQTT
F
E
E
--
A
--------
L
--
D
--
E
--------------------------------
A
K
R
L
G
F
A
E
A
D
P
T
D
D
V
E
G
-------
V
D
-
A
A
R
K
V
V
I
T
S
Y
L
S
F
N
Q
V
I
K
LNDVKRRGISGVT
L
T
D
I
N
V
A
D
Q
L
G
Y
K
I
K
L
I
G
K
G
I
Y
E
NG
K
V
N
A
S
V
E
P
T
L
I
DKKHQLAAVEDE
Y
N
A
I
Y
V
I
GDAV
G
D
T
M
F
Y
G
K
G
A
G
S
L
A
T
G
S
A
V
V
S
D
L
L
N
V
A
L
F
FESTLPP
H
F
E
L
KTDKTREME
K
S
N
F
F
V
V
V
N
HVKGS
I
E
N
F
E
N
E
L
K
A
I
LPFHR
S
L
R
V
A
N
YDNQ
S
Y
A
A
V
I
V
GLESSP
E
E
L
I
T
K
H
GYEVD
K
V
Y
P
V
E
GV
2
HHSearch
44.73
15%
-180
- C4 -
-
2NNW
-
?
C:
[226-296]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
V
--
R
Q
L
A
E
-
E
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---
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Y
Q
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K
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E
D
Y
I
D
-
R
A
M
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D
V
-----
A
P
----
N
L
-----
K
A
L
--
V
G
A
K
L
A
A
R
L
I
S
L
A
G
---
G
----
L
R
E
--
L
--------
A
--
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
44.46
11%
-384
* C4 *
-
2MUT
-
XPF_HUMAN
B:
[838-865]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
----
F
L
-----
L
K
M
P
G
V
N
A
K
N
C
R
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L
M
H
H
V
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---
N
----
I
A
E
--
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
43.86
17%
-101
- C4 -
-
2A1J
-
B:
[31-74]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
----
C
L
-----
T
T
V
K
S
V
N
K
T
D
S
Q
T
L
L
T
T
F
G
---
S
----
L
E
Q
--
L
--------
I
A
A
S
--
R
--------------------------------
E
D
L
A
L
C
P
G
L
G
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
43.34
18%
54
- C3 -
-
2NCL
-
BOLA3_HUMAN
A:
[1-81]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
--
Q
T
E
G
E
L
R
V
T
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Q
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---
R
A
----
T
A
-----
I
K
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G
G
C
G
A
M
Y
E
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--------
K
--
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--
K
--------------------------------
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E
E
I
----
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---
E
-
M
H
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V
P
K
-
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
42.97
18%
-177
- C4 -
-
2NRZ
-
UVRC_THEMA
A:
[167-207]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
----
V
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--
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--------
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A
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--
L
--------------------------------
E
E
I
A
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V
I
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
42.50
15%
-13
- C3 -
-
1CY5
1
APAF_HUMAN
A:
[1-92]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
A
K
A
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N
C
L
--
L
Q
H
R
E
-
A
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K
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IK
T
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Y
I
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E
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M
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I
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M
I
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---
K
---------------------------------------------------------
K
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N
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F
Y
N
A
L
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----
Y
--
K
D
-
L
A
-
A
L
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H
D
G
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
42.40
18%
-60
- C4 -
-
1CUK
-
RUVA_ECOLI
A:
[72-133]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
K
----
E
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I
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N
G
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G
P
K
L
A
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A
I
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M
S
A
Q
Q
F
----
V
N
A
V
E
R
--------
E
--
E
--
V
--------------------------------
G
A
L
V
K
L
P
G
I
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K
K
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
39.99
13%
-51
* C3 *
-
1ZTS
-
YQBG_BACSU
A:
[1-139]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
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I
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-----
I
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----
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GHDFS
D
A
E
Y
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P
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P
E
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R
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A
L
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---
Q
----
F
Y
A
--
L
--------
I
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N
--
G
DESIIKGYTTEKIGDYSYTLGDGSSLQKPDVY
A
L
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Y
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K
P
A
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P
D
L
E
G
I
----
E
--
A
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V
R
M
R
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I
L
E
H
H
H
H
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
39.12
16%
-48
- C2 -
-
3U4E
2
?
G:
[1-122]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
T
F
K
L
A
A
C
V
T
--
L
R
C
-
T
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N
A
--
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I
---
N
G
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C
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F
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Y
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T
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--
E
AVDAATAA
K
--
V
--
F
--------------------------------
K
Q
Y
A
N
D
N
G
I
D
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E
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Y
D
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----
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--
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L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
37.69
12%
-148
- C4 -
-
2OZB
-
PRP31_HUMAN
E:
[113-178]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
--
E
E
A
C
D
-
M
A
--
L
E
---
L
N
A
S
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K
H
R
I
Y
E
Y
V
E
-
S
R
M
S
F
I
-----
A
P
----
N
L
-----
S
I
I
--
I
G
A
S
T
A
A
K
I
M
G
V
A
G
---
G
----
L
T
N
--
L
--------
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
36.17
12%
-145
- C4 -
-
3SIV
-
PRP31_HUMAN
K:
[186-248]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
--
E
E
A
C
D
-
M
A
--
L
E
---
L
N
A
S
--
K
H
R
I
Y
E
Y
V
E
-
S
R
M
S
F
I
-----
A
P
----
N
L
-----
S
I
I
--
I
G
A
S
T
A
A
K
I
M
G
V
A
G
---
G
----
L
T
N
--
L
--------
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
34.61
15%
-6
- C3 -
-
2K5C
-
?
A:
[8-95]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
K
C
P
I
C
G
S
P
L
---
K
W
E
E
-
L
I
--
E
E
---
M
L
I
I
EN
F
E
E
I
V
K
D
R
E
-
R
F
L
A
Q
V
-----
E
E
----
F
V
-----
F
K
C
P
V
C
G
E
E
F
Y
G
K
T
L
P
R
R
E
---
A
----
E
K
V
--
F
--------
E
--
L
--
L
--------------------------------
N
D
F
K
------------
G
----
G
--
I
D
-
W
-----
E
N
K
R
V
K
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
34.42
20%
103
- C4 -
-
5JQZ
-
?
A:
[6-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
A
I
E
A
-
N
S
--
R
M
---
L
K
A
L
--
I
E
I
A
K
A
I
W
K
-
A
L
W
A
N
S
-----
L
L
----
L
E
-----
A
T
S
R
G
---------------------------------------
D
--
T
--------------------------------
E
R
M
R
Q
W
A
E
E
A
R
K
I
Y
K
E
A
----
E
K
I
I
D
-
R
A
D
E
I
V
E
E
A
K
K
R
H
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
34.20
21%
-237
- C4 -
-
3VDP
1
RECR_CALS4
B:
[24-47]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-----
I
E
----
E
L
-----
S
K
L
P
G
I
G
P
K
T
A
Q
R
L
A
F
F
I
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
34.09
15%
-29
- C4 -
-
4BY9
1
?
F:
[219-277]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
V
--
R
Q
L
A
E
-
E
I
--
D
R
---
L
Y
Q
L
--
R
K
K
L
E
D
Y
I
D
-
R
A
M
D
D
V
-----
A
P
----
N
L
-----
K
A
L
--
V
G
A
K
L
A
A
R
L
I
S
L
A
G
---
G
----
L
R
E
--
L
--------
A
--
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------