@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1985: (2018-01-24 )
MSKLLDKILSRENMLEAYNQVKSNKGSAGIDGMTIEEMDNYLRQNWRLTKELIKQRKYKPQPVLRVEIPKPDGGIRQLGIPTVMDRMIQQAIV
Atome Classification :
(20 SA)
--------------------.........10--.-------........20.....-.------..30---........40..----......50......-------.-.60.----------.....----..70.---------.-.-.--....--------80........90..---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------
M
S
K
L
L
D
K
I
L
S
---
R
-------
E
N
M
L
E
A
Y
N
Q
V
KSNKG-S------AGID---GM
T
I
E
E
M
D
N
Y
L
R
----
Q
N
W
R
L
T
K
E
L
I
K
QRK-------Y-KPQ
P
----------
V
L
R
V
E----IPKPD---------G-G-I--RQLG--------
I
P
T
V
M
D
R
M
I
Q
Q
AIV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
93.37
58%
-92
- C3 -
-
5HHJ
4
?
A:
[16-107]
---------------------
S
S
L
M
E
Q
I
L
S
---
N
-------
D
N
L
N
R
A
Y
L
Q
V
V
R
N
K
G
-
A
------
E
G
V
D
---
G
M
K
Y
T
E
L
K
E
Y
L
A
----
K
N
G
E
I
I
K
E
Q
L
R
I
R
K
-------
Y
-
K
P
Q
P
----------
V
R
R
V
E
----
I
P
K
P
D
---------
G
-
G
-
V
--
R
N
L
G
--------
V
P
T
V
T
D
R
F
I
Q
Q
A
I
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
92.68
59%
-91
- C3 -
-
5HHJ
4
?
A:
[16-106]
---------------------
S
S
L
M
E
Q
I
L
S
---
N
-------
D
N
L
N
R
A
Y
L
Q
V
V
R
N
K
G
-
A
------
E
G
V
D
---
G
M
K
Y
T
E
L
K
E
Y
L
A
----
K
N
G
E
I
I
K
E
Q
L
R
I
R
K
-------
Y
-
K
P
Q
P
----------
V
R
R
V
E
----
I
P
K
P
D
---------
G
-
G
-
V
--
R
N
L
G
--------
V
P
T
V
T
D
R
F
I
Q
Q
A
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_CBE
92.60
58%
-94
- C3 -
-
5HHJ
1
?
B:
[16-107]
---------------------
S
S
L
M
E
Q
I
L
S
---
N
-------
D
N
L
N
R
A
Y
L
Q
V
V
R
N
K
G
-
A
------
E
G
V
D
---
G
M
K
Y
T
E
L
K
E
Y
L
A
----
K
N
G
E
I
I
K
E
Q
L
R
I
R
K
-------
Y
-
K
P
Q
P
----------
V
R
R
V
E
----
I
P
K
P
D
---------
G
-
G
-
V
--
R
N
L
G
--------
V
P
T
V
T
D
R
F
I
Q
Q
A
I
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
91.97
56%
-90
- C3 -
-
5HHK
2
?
A:
[15-107]
--------------------
T
S
S
L
M
E
Q
I
L
S
---
N
-------
D
N
L
N
R
A
Y
L
Q
V
V
R
N
K
G
-
A
------
E
G
V
D
---
G
M
K
Y
T
E
L
K
E
Y
L
A
----
K
N
G
E
I
I
K
E
Q
L
R
I
R
K
-------
Y
-
K
P
Q
P
----------
V
R
R
V
E
----
I
P
K
P
D
---------
G
-
G
-
V
--
R
N
L
G
--------
V
P
T
V
T
D
R
F
I
Q
Q
A
I
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
89.68
55%
-75
- C3 -
-
5HHL
-
?
A:
[4-95]
---------------------
S
N
L
M
E
Q
I
L
S
---
S
-------
D
N
L
N
R
A
Y
L
Q
V
V
R
N
K
G
-
A
------
E
G
V
D
---
G
M
K
Y
T
E
L
K
E
H
L
A
----
K
N
G
E
T
I
K
G
Q
L
R
T
R
K
-------
Y
-
K
P
Q
P
----------
A
R
R
V
E
----
I
P
K
P
D
---------
G
-
G
-
V
--
R
N
L
G
--------
V
P
T
V
T
D
R
F
I
Q
Q
A
I
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
89.50
56%
-102
- C3 -
-
5IRG
-
?
A:
[17-107]
----------------------
S
L
M
E
Q
I
L
S
---
N
-------
D
N
L
N
R
A
Y
L
Q
V
V
R
N
K
G
-
A
------
E
G
V
D
---
G
M
K
Y
T
E
L
K
E
Y
L
A
----
K
N
G
E
I
I
K
E
Q
L
R
I
R
K
-------
Y
-
K
P
Q
P
----------
V
R
R
V
E
----
I
P
K
P
D
---------
G
-
G
-
V
---
N
L
G
--------
V
P
T
V
T
D
R
F
I
Q
Q
A
I
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
88.98
56%
-76
- C3 -
-
5HHL
-
?
A:
[4-94]
---------------------
S
N
L
M
E
Q
I
L
S
---
S
-------
D
N
L
N
R
A
Y
L
Q
V
V
R
N
K
G
-
A
------
E
G
V
D
---
G
M
K
Y
T
E
L
K
E
H
L
A
----
K
N
G
E
T
I
K
G
Q
L
R
T
R
K
-------
Y
-
K
P
Q
P
----------
A
R
R
V
E
----
I
P
K
P
D
---------
G
-
G
-
V
--
R
N
L
G
--------
V
P
T
V
T
D
R
F
I
Q
Q
A
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
81.02
58%
65
- C3 -
-
5HHJ
4
?
A:
[12-305]
-----------------RMD
T
S
S
L
M
E
Q
I
L
S
---
N
-------
D
N
L
N
R
A
Y
L
Q
V
V
R
N
K
G
-
A
------
E
G
V
D
---
G
M
K
Y
T
E
L
K
E
Y
L
A
----
K
N
G
E
I
I
K
E
Q
L
R
I
R
K
-------
Y
-
K
P
Q
P
----------
V
R
R
V
E
----
I
P
K
P
D
---------
G
-
G
-
V
--
R
N
L
G
--------
V
P
T
V
T
D
R
F
I
Q
Q
A
I
A
Q
V
L
T
P
I
Y
E
E
Q
FHDHSYGFRPNRC
A
Q
Q
A
I
L
T
A
L
D
M
M
N
D
GNDW
I
V
D
I
D
L
E
KFFDTVN
H
D
K
L
M
T
I
I
G
R
TIKD
G
D
V
I
S
I
V
R
K
Y
L
V
S
G
I
M
I
DDEYEDSIVGTPQGGNL
S
P
L
L
A
N
I
M
L
N
E
L
D
K
E
M
E
K
R
G
L
N
F
V
R
Y
AD
D
C
I
I
M
V
GS
E
M
S
A
N
R
V
M
R
N
I
S
R
F
I
E
EKLGLKVNMTK
S
K
V
D
R
PRGIKYLG
F
G
F
Y
Y
DTSAQ
Q
F
K
A
K
PHAK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
45.62
16%
14
- C4 -
-
4Q7O
2
?
A:
[4-136]
MKNNIF
L
N
L
N
K
K
S
I
N
N
NH
F
V
I
S
I
F
F
E
T
I
Y
Q
FET
K
-------
D
T
L
L
E
C
F
K
N
I
T
T
T
-
G
-
H
------
F
G
V
I
---
G
A
Q
Y
E
K
I
D
A
-------
T
R
W
I
G
D
Y
E
E
V
N
G
F
E
-------
Y
I
D
K
A
P
----------
S
I
Y
F
S
----
V
G
D
D
F
---------
N
-
P
-
E
--
E
L
I
I
--------
P
I
N
L
A
Y
H
Y
F
N
I
A
I
S
D
F
L
I
A
H
PEY
Q
K
K
C
K
E
I
Q
K
T
Y-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
45.11
15%
-48
- C3 -
-
4ZPC
-
?
A:
[123-190]
-------------------------------------------------------------------
L
---
G
I
K
K
R
D
I
L
S
K
K
T
----
K
D
L
T
K
L
K
E
C
M
D
K
Y
G
-------
L
-
N
-
L
P
----------
M
--
V
T
----
Y
V
K
D
E
L
R
S
I
E
K
V
A
K
G
-
K
-
S
--
R
L
I
E
--------
A
S
S
L
N
D
S
V
A
M
R
Q
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
43.14
34%
60
- C3 -
-
5G2X
-
LTRA_LACLC
C:
[24-216]
---------------------
T
R
L
Y
R
Y
L
L
R
---
P
-------
D
I
Y
Y
V
A
Y
Q
N
L
Y
S
N
K
G
-
A
ST----
K
G
I
L
---
D
D
T
A
D
G
F
S
---
E
----
E
K
I
K
K
I
I
Q
S
L
K
D
G
T
-------
Y
-
Y
P
Q
P
----------
V
R
R
M
Y
----
I
A
K
K
N
---------
S
K
K
-
M
--
R
P
L
G
--------
I
P
T
F
T
D
K
L
I
Q
E
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
42.96
33%
-72
- C3 -
-
3AQP
-
SECDF_THET8
A:
[121-159]
-----------------------------------------------------------------
G
A
T
---
G
T
T
V
A
Q
I
N
Q
A
L
R
----
E
N
P
R
L
N
R
E
E
L
E
K
D
L
-------
I
-
K
P
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
41.90
15%
-43
* C3 *
-
3CDU
4
A:
[123-190]
-------------------------------------------------------------------
L
---
G
I
K
K
R
D
I
L
S
K
K
T
----
K
D
L
T
K
L
K
E
C
M
D
K
Y
G
-------
L
-
N
-
L
P
----------
M
--
V
T
----
Y
V
K
D
E
L
R
S
I
E
K
V
A
K
G
-
K
-
S
--
R
L
I
E
--------
A
S
S
L
N
D
S
V
A
M
R
Q
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
41.59
32%
89
- C3 -
-
5G2X
1
LTRA_LACLC
C:
[4-591]
-TMAILERISKNSQENIDEV
F
T
R
L
Y
R
Y
L
L
R
---
P
-------
D
I
Y
Y
V
A
Y
Q
N
L
Y
S
N
K
G
--------
A
S
T
K
---
G
I
L
D
D
T
A
D
G
F
S
E
----
E
K
I
K
K
I
I
Q
S
L
K
D
G
T
-------
Y
-
Y
P
Q
P
----------
V
R
R
M
Y
----
I
A
K
K
N
---------
S
-
K
K
M
--
R
P
L
G
--------
I
P
T
F
T
D
K
L
I
Q
E
A
V
R
IILESIYEPVFEDVSHGFRPQRSCHTALKTIKREFGGARWFVEGDIKGCFDNIDHVTLIGLINLKIKDMKMSQLIYKFLKAGYLENWQYHKTYSGTPQGGILSPLLANIYLHELDKFVLQLKMKFDRESPERITPEKYVRYADDFIISVKGSKEDCQWIKEQLKLFIHNKLKMELSEEKTLITHSSQPARFLGYDIRVVKKRTLNGSVELLIPLQDKIRQFIFDKKIAIQKKDSSWFPVHRKYLIRSTDLEIITIYNSELRGICNYYGLASNFNQLNYFAYLMEYSCLKTIASKHKGTLSKTISMFKDGSGSWGIPYEIKQGKQRRVLYGYARNTLENRLKAKCCELCGTSDENTSYEIHHVNRKTLVVCFHCH-------------------------------------------
29
HHSearch
41.28
17%
-136
- C3 -
-
3DU5
-
?
B:
[181-204]
-----------------------------------------------------------------------------------------------------------------
R
----------
G
V
L
N
I
----
I
P
K
Q
----------
D
-
N
-
F
--
R
A
I
V
--------
S
I
F
P
D
S
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
40.90
21%
-81
- C3 -
-
1RP3
-
?
B:
[58-76]
---------------------------------------------------------------------------------------
K
K
V
K
E
L
K
E
K
I
E
K
G
E
-------
Y
-
E
V
S
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
40.79
14%
19
* C2 *
-
1KFQ
-
PGM1_PARTE
A:
[206-323]
--------------------
V
Q
D
Y
T
Q
L
M
Q
K
---
L
-------
F
D
F
D
L
L
K
G
L
F
S
N
K
D
-
F
S
------
F
R
F
D
GMH
G
V
A
G
P
Y
A
K
H
I
F
G
----
T
L
L
G
C
S
K
E
S
L
L
N
C
D
PSEDFGG
G
-
H
P
D
P
NLTYA
H
D
L
V
E
L
L
D
I
H
----
K
K
K
D
V
---------
G
-
T
-
V
--
P
Q
F
G
--------
A
A
C
D
G
D
A
D
R
N
M
I
L
G
RQ
F
F
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
39.30
17%
32
- C1 -
-
4IMP
1
?
A:
[31-550]
-----------------SD
P
A
A
G
W
F
W
Q
A
V
A
---
R
-------
Q
D
L
K
S
V
S
D
A
L
D
L
D
A
D
-
A
P
L
S
A
T
L
P
A
L
S
---
V
W
H
R
Q
E
R
E
R
V
L
A
----
D
G
W
R
Y
R
V
D
W
V
R
V
-----------
A
P
Q
P
----------
V
R
R
T
R
E
T
W
L
L
V
V
P
P
---------
G
-
G
-
I
--
E
E
A
L
--------
V
E
R
L
T
D
A
L
N
T
R
G
I
S
T
L
R
L
D
V
P
P
AAT
S
G
E
L
A
T
E
L
R
A
A
A
D
G
DPVK
A
I
L
S
LTALDERPHPECKDVP
S
G
I
A
L
L
L
N
L
V
K
A
L
G
E
A
DLR
I
P
L
W
T
I
T
R
GAVKAGPADRLLR
P
M
Q
A
Q
A
W
G
L
G
R
V
A
A
L
E
HPERWG
G
L
I
D
L
P
DSLDGD
V
L
T
R
L
G
E
A
L
T
NGLAED
Q
L
A
I
R
QS
G
V
L
A
R
R
L
V
P
A
P
ANQPAGRK
W
R
P
R
G
S
A
L
I
T
GGLG
A
V
G
A
Q
V
A
R
W
L
A
E
I
GAE
R
I
V
L
T
S
RRGNQAAG
A
A
E
L
E
A
E
L
R
A
L
G
A
Q
V
S
I
V
ACDVTD
R
A
E
M
S
A
L
L
A
E
F
DVT
A
V
F
H
A
A
G
V
G
R
L
L
P
LAETD
Q
N
G
L
A
E
I
C
A
A
K
V
R
G
A
Q
V
L
D
E
L
C
DSTDLDAF
V
L
F
S
S
GAGVWGGGGQ
G
A
Y
G
A
A
N
A
F
L
D
T
L
A
E
Q
R
R
A
R
G
L
P
A
T
S
I
S
W
G
S
WAGGGMADG
A
A
G
E
H
L
R
R
R
G
I
R
P
M
P
A
A
S
A
I
L
A
L
Q
E
V
L
D
Q
DET
C
V
S
I
A
DVD
W
D
R
F
V
P
T
F
A
A
TRATRLFDEV
P
A
A
R
K
AM
5
PsiBlast_PDB
38.60
36%
53
- C3 -
-
5G2X
-
LTRA_LACLC
C:
[39-216]
----------------------------------------------
A
Y
Q
N
L
Y
S
N
K
G
--------
A
S
T
K
---
G
I
L
D
D
T
A
D
G
F
S
E
----
E
K
I
K
K
I
I
Q
S
L
K
D
G
T
-------
Y
-
Y
P
Q
P
----------
V
R
R
M
Y
----
I
A
K
K
N
---------
S
-
K
K
M
--
R
P
L
G
--------
I
P
T
F
T
D
K
L
I
Q
E
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
38.37
17%
13
- C2 -
-
1TTW
-
?
A:
[3-120]
-------------------T
Y
S
S
L
L
E
E
F
A
T
---
E
L
GLE
E
I
E
T
N
E
L
G
H
G
A
V
T
I
D
K
I
W
-
V
------
V
H
L
A
---
P
I
N
E
K
E
L
V
A
F
M
R
A
G
I
L
T
G
Q
S
Q
L
Y
D
I
L
R
K
N
L
-------
F
-
S
P
L
S
G---------
V
I
R
C
A
----
L
D
K
D
D
---------
H
-
W
-
L
L
W
S
Q
L
N
INDTS
G
T
Q
L
A
S
V
L
T
S
L
V
D
K
A
V
T
L
S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------