@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VM16: (2017-11-05 )
MQIYLARNNQQAGPYTLEQLNQMLASQQVLLTDLAWHEGMTEWKALGELTQGKLVYQPTGYSAFSANTNTPYNETIQHIRVETKTHELASISSRALAKIIDLLLWLPIAAIPSFFFNEAQYKQLFELQKQMQSAEVASTKAAELQQQLFTLIPIEAWHTMLLYVVIMLAIQAFLLTKFGQSIGKKIVGIRIVDAENNGKVNLTRIFLLRSVVFIILNLLFMPISTIIDYAFALGQKRQALHDKIARTKVIK
Atome Classification :
(20 SA)
--------------.......-..10........20........30.-......----.--------40-.-........50.----.......60.....-...70........80-........--------90------------------........-.100.......110.....-.--.120.....--------..130.......140----.........150-----.........160------.-----------------------.......170-------------....----....180.......-190....---...200.......210--.......220--------.....------..230.......240.......250---------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------
M
Q
I
Y
L
AR-NNQQAGP
Y
T
L
E
Q
L
N
Q
M
L
A
S
Q
Q
V
L
L
T
-
D
L
A
W
HE----G--------
M
--
T
-
E
W
K
A
L
G
ELTQG----
K
L
V
YQPTGYSAFSA-NTNT
P
Y
N
E
T
I
Q
H
I
R
V
-ETK
T
H
E
L
A
--------
S
-------------------
I
S
S
R
A
L
A
K
-
I
I
D
L
L
L
W
L
P
I
A
A
I
P
S
F
F
F
N
-
E
--
A
Q
Y
K
Q
L
F
E
L
--------
Q
K
Q
M
Q
S
A
EVAS
T
K
------
A
A
E
L
Q
Q
Q
L
F
T
-------LI
P
I
E
A
W
H
T
M
L
-------
L
-----------------------
Y
V
V
I
M
L
A
I
Q
--------------
A
F
L
L
----
T
K
F
G
Q
S
I
G
K
K
I
V
G
I
-
R
I
V
DAEN---NG
K
V
N
L
T
R
I
F
L
L
R
S
V
V
--
F
I
I
L
N
L
L
F
M
P
--------
I
S
T
I
I
------
D
Y
A
F
A
LG
Q
K
R
Q
A
L
H
D
K
I
A
RTKVIK----------------------------------------------
3
PsiBlast_PDB
56.90
30%
-108
- C4 -
-
4N7E
-
SORT_HUMAN
A:
[88-158]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
R
----
T
E
F
G
M
A
I
G
P
E
N
S
G
K
-
V
V
L
T
A
E
V
---
S
G
G
S
R
G
G
R
I
F
R
S
S
D
F
A
K
N
F
V
Q
T
D
L
P
F
H
P
--------
L
T
Q
M
M
Y
S
PQNS
D
Y
L
L
A
L
----------------------------------------------------------------
5
PsiBlast_PDB
56.38
30%
-118
- C4 -
-
5MRH
-
SORT_HUMAN
A:
[88-168]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
R
----
T
E
F
G
M
A
I
G
P
E
N
S
G
K
-
V
V
L
T
A
E
V
---
S
G
G
S
R
G
G
R
I
F
R
S
S
D
F
A
K
N
F
V
Q
T
D
L
P
F
H
P
--------
L
T
Q
M
M
YSPQNS
D
Y
L
L
A
L
----------------------------------------------------------------
6
PsiBlast_PDB
56.10
30%
-109
- C4 -
-
5MRI
1
SORT_HUMAN
A:
[88-156]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
R
----
T
E
F
G
M
A
I
G
P
E
N
S
G
K
-
V
V
L
T
A
E
V
---
S
G
G
S
R
G
G
R
I
F
R
S
S
D
F
A
K
N
F
V
Q
T
D
L
P
F
H
P
--------
L
T
Q
M
M
YSPQNS
D
Y
L
L
A
L
----------------------------------------------------------------
1
PsiBlast_PDB
54.97
30%
-109
- C4 -
-
3F6K
-
SORT_HUMAN
A:
[88-156]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
R
----
T
E
F
G
M
A
I
G
P
E
N
S
G
K
-
V
V
L
T
A
E
V
---
S
G
G
S
R
G
G
R
I
F
R
S
S
D
F
A
K
N
F
V
Q
T
D
L
P
F
H
P
--------
L
T
Q
M
M
Y
S
PQNS
D
Y
L
L
A
L
----------------------------------------------------------------
2
PsiBlast_PDB
54.86
30%
-114
- C4 -
-
4PO7
1
SORT_HUMAN
A:
[88-160]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
R
----
T
E
F
G
M
A
I
G
P
E
N
S
G
K
-
V
V
L
T
A
E
V
---
S
G
G
S
R
G
G
R
I
F
R
S
S
D
F
A
K
N
F
V
Q
T
D
L
P
F
H
P
--------
L
T
Q
M
M
Y
S
PQNS
D
Y
L
L
A
L
----------------------------------------------------------------
4
PsiBlast_PDB
54.62
30%
-95
* C4 *
-
4MSL
-
SORT_HUMAN
A:
[88-158]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
R
----
T
E
F
G
M
A
I
G
P
E
N
S
G
K
-
V
V
L
T
A
E
V
---
S
G
G
S
R
G
G
R
I
F
R
S
S
D
F
A
K
N
F
V
Q
T
D
L
P
F
H
P
--------
L
T
Q
M
M
Y
S
PQNS
D
Y
L
L
A
L
----------------------------------------------------------------
19
Fugue
44.32
11%
-7
- C1 -
-
3TM4
-
?
A:
[1-370]
M
K
F
L
L
T
T
A
QGI
E
D
I
A
K
R
E
V
S
L
-
L
L
K
K
L
G
I
S
F
Q
I
E
E
K
P
L
G
I
E
G
R
L
L
L
E
A
E
K
A
Y
Y
V
D
EKG
R
--------
K
--
R
-
E
L
S
I
S
T
Y
L
N
E
N
SRLL
H
R
V
I
I
E
I
A
S
E
K
F
N
G
-
I
E
K
D
E
S
E
E
A
L
K
R
I
K
D
-
F
V
S
S
L
P
V
E
--------
Q
F
V
KVS
E
T
F
A
V
R
S
F
R
K
G
DHN
I
T
S
I
D
I
A
R
-
T
V
G
E
A
I
F
E
R
L
S
R
F
G
T
P
L
V
N
-
L
DH
P
A
V
I
F
R
A
E
L
--------
I
K
D
V
F
F
L
G
I
D
T
T
G
------
D
S
S
L
H
K
R
P
W
R
-------
V
Y
D
H
P
A
H
L
K
A
S
-------
I
-----------------------
A
N
A
M
I
E
L
A
E
LDGGSVLDPMCGSG
T
I
L
I
----
E
L
A
L
R
R
Y
S
G
E
I
I
G
I
E
K
Y
R
K
H
L
I
---
G
A
E
M
N
A
L
A
A
G
V
L
D
K
I
K
--
F
I
Q
G
D
A
T
Q
L
S
QYVDSVD
F
A
I
S
N
L
------
P
Y
G
S
M
I
P
D
L
Y
M
K
F
F
N
E
L
A
K
V
L
E
K
R
G
V
F
I
T
TE
K
K
A
I
E
E
A
I
A
E
N
GFEII
H
H
R
V
I
G
H
GGLM
V
H
L
Y
V
V
K
LEHHH
16
HHSearch
44.13
17%
-242
- C2 -
-
2K7L
-
A:
[2-24]
---------------------------
V
Q
V
T
E
D
A
V
R
R
Y
L
T
R
K
P
M
T
T
K
-
D
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
42.44
20%
-129
- C2 -
-
3BPQ
-
RELB3_METJA
A:
[8-48]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
F
F
I
S
-
R
--
K
E
Y
E
K
I
E
E
I
--------
L
D
I
G
L
A
K
A
M
E
E
T
K
D
D
E
L
L
T
Y
D
E
I
K
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
38.47
22%
12
- C2 -
-
5EP6
2
AZI2_HUMAN
A:
[1-36]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
-
D
--
N
M
Q
H
A
Y
W
E
L
--------
K
R
E
M
S
N
L
H
L
V
T
Q
V
------
Q
A
E
L
L
R
K
L
K
T
-------
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
36.57
16%
-85
- C2 -
-
1WH2
-
A:
[19-70]
---------------
N
W
L
Y
K
D
P
Q
G
L
V
Q
G
P
F
S
L
T
Q
L
K
A
W
S
D
A
E
Y
F
T
K
Q
-
F
R
V
W
M
T
----
G
--------
E
SM
E
-
S
A
V
L
L
T
D
V
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
36.54
15%
-4
- C1 -
-
5JJ6
-
FICD_CAEEL
A:
[19-352]
-----KEAIL
A
A
K
A
A
G
R
S
R
K
D
-
G
N
L
E
R
A
M
T
I
M
E
H
A
M
A
L
A
P
T
N
P
Q
I
L
I
-
E
M
G
Q
I
R
----
E
--------
M
--
H
N
E
L
V
E
A
D
Q
C
Y
V
K
----
A
L
A
Y
D
P
G
N
S
E
A
L
V
L
-
R
A
R
T
T
P
L
V
S
A
I
D
R
K
M
-
L
R
S
V
H
D
L
R
D
E
F
N
HLQH
S
-------------------
T
A
L
R
R
M
M
R
-
E
T
Y
F
L
Y
V
Y
H
T
V
A
I
E
G
N
T
L
S
-
L
--
G
Q
T
R
A
I
L
E
S
G
M
V
I
P
GKS
I
R
E
H
N
E
V
I
G
M
D
A
A
------
L
R
F
L
N
C
S
L
L
S
KEHDEIS
I
D
D
I
L
E
M
H
R
R
V
-------
L
GNADPVEAGRIRTTQVYTPVSPE
Y
V
M
E
Q
L
K
D
I
--------------
V
D
W
L
N
D
E
S
T
L
T
I
D
P
I
E
R
A
A
I
A
H
-
Y
K
L
V
L
V
H
PFT
D
G
N
G
R
T
A
R
L
L
L
N
L
I
M
M
--
R
S
G
F
P
P
V
I
L
P
--------
V
E
T
R
A
------
E
Y
Y
A
S
L
H
V
A
N
L
G
D
L
R
P
F
V
R
Y
V
A
K
H
S
E
A
S
I
Q
R
Y
I
G
A
M
K
T
S
S------------------------------
25
Fugue
35.44
16%
-42
- C1 -
-
5KXF
-
A:
[30-156]
------------------------------------------------------------------------------------------------
H
I
W
R
G
M
I
A
K
G
G
T
P
V
C
C
A
R
C
V
P
M
E
T
K
L
P
E
V
V
--------
N
-------------------
C
S
A
R
T
D
L
N
M
L
A
K
H
Y
A
V
A
I
G
C
E
I
V
F
F
V
P
D
R
E
--
E
D
F
A
S
Y
T
E
F
--------
L
R
Y
L
S
S
K
D
R
A
G
V
A
------
K
L
D
D
G
T
T
L
F
L
-------
V
P
P
S
D
F
L
T
D
V
L
QVTRQE
R
L
-----------------------
Y
G
V
V
L
K
L
P
P
--------------
P
A
----------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
32.71
17%
7
* C2 *
-
1TIF
-
IF3_GEOSE
A:
[19-42]
------------------
I
D
Q
-
N
G
D
Q
L
G
I
K
S
K
Q
E
A
L
E
I
A
A
R
R
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
32.21
21%
-67
- C2 -
-
3FMA
-
SMY2_YEAST
C:
[17-78]
---------------
S
W
R
Y
I
D
T
Q
G
Q
I
H
G
P
F
T
T
Q
M
M
S
Q
W
Y
I
G
G
Y
F
A
S
T
-
L
Q
I
S
R
L
----
G
STPETLGI
N
--
D
-
I
F
I
T
L
G
E
L
M
T
K
----
L
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
30.24
9%
-81
- C2 -
-
4BWS
-
F:
[21-66]
--------------------
G
-
D
A
E
L
Y
G
P
F
T
S
A
Q
M
Q
T
W
V
S
E
G
Y
F
P
D
G
-
V
Y
C
R
K
L
----
D
--------
P
PG
G
-
Q
F
Y
N
S
K
R
I
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
29.39
21%
-54
- C- -
-
3K3V
-
A:
[17-78]
---------------
S
W
R
Y
I
D
T
Q
G
Q
I
H
G
P
F
T
T
Q
M
M
S
Q
W
Y
I
G
G
Y
F
A
S
T
-
L
Q
I
S
R
L
----
G
STPETLGI
N
--
D
-
I
F
I
T
L
G
E
L
M
T
K
----
L
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
28.83
20%
-162
* C1 *
-
2LVR
-
A:
[1-30]
--------------------------
M
K
P
Y
V
C
I
H
C
Q
R
Q
F
A
D
P
G
A
L
Q
R
-
H
V
R
I
H
T
----
G
--------
E
--
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
25.65
16%
-101
* C3 *
-
5GHS
-
?
D:
[41-59]
------------------
L
G
P
-
D
M
K
E
Y
G
P
F
M
A
G
D
M
A
I
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
21.17
16%
-52
- C3 -
-
5GHR
-
?
B:
[41-59]
------------------
L
G
P
-
D
M
K
E
Y
G
P
F
M
A
G
D
M
A
I
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------