@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TYN4: (2017-12-15 )
MYKKKVGDSVKITYYEGSKEKTTTVELTIDQSALKQNQNSEN
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------.....---....10....--.-...-20....---....-30........40.--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------MYKKK---VGD
S
V
K
I
T
Y
Y--E-GSK-E
K
T
T
T
V
---
E
L
T
I-
D
Q
S
A
L
KQNQNSEN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
65.95
30%
138
- C6 -
-
2KJK
-
?
A:
[1-100]
------------------------------------------MVKVTY
D
G
V
Y
V
LSVKEDVPAAGILHAGDLITEIDGQSFKS
S
Q
E
F
I
D
Y
I
H
S
K
K
---
V
G
D
T
V
K
I
K
Y
K
--
H
-
G
N
K
-
N
E
E
A
S
I
---
K
L
T
A
-
I
D
K
K
G
T
P
G
I
G
I
T
L
V
D
DLEHHHHHH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
64.69
48%
-60
- C6 -
-
2L97
-
?
A:
[98-124]
-----------------------------------------------------------------------------------------
L
Y
N
H
S
---
I
G
D
T
I
K
I
T
Y
Y
--
R
-
N
G
K
-
E
E
T
T
S
I
---
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
61.88
46%
20
- C6 -
-
3I18
-
?
A:
[48-79]
-----------------------------------------------------------------------------------------
I
H
S
K
K
---
V
G
D
T
V
K
I
N
Y
K
--
H
-
G
D
K
-
N
E
Q
A
D
I
---
K
L
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
60.09
46%
6
- C6 -
-
2KJK
-
?
A:
[48-75]
-----------------------------------------------------------------------------------------
I
H
S
K
K
---
V
G
D
T
V
K
I
K
Y
K
--
H
-
G
N
K
-
N
E
E
A
S
I
---
K
L
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
58.04
46%
1
- C6 -
-
3I1E
-
?
A:
[43-70]
-----------------------------------------------------------------------------------------
I
H
S
K
K
---
V
G
D
T
V
K
I
K
Y
K
--
H
-
G
N
K
-
N
E
E
A
S
I
---
K
L
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
57.93
52%
3
- C6 -
-
2L97
-
?
A:
[102-124]
---------------------------------------------------------------------------------------------
S
---
I
G
D
T
I
K
I
T
Y
Y
--
R
-
N
G
K
-
E
E
T
T
S
I
---
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
53.01
43%
-186
- C6 -
-
3J6B
-
IMG1_YEAST
M:
[71-91]
---------------------------------------------------------------------------------------------
K
---
A
G
D
V
V
R
I
V
Y
---
D
-
S
S
K
-
C
S
Y
D
T
F
---
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
50.40
32%
-41
- C6 -
-
3QO6
-
DEGP1_ARATH
C:
[307-331]
--------------------------------------------------------------------------------------------
C
K
---
V
G
D
E
V
T
V
E
V
L
--
R
-
G
D
H
-
K
E
K
I
S
V
---
T
L
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
49.23
53%
-2
- C6 -
-
4IAJ
-
?
B:
[7-24]
-----------------------------------------------------------------------------------------------------
I
E
I
T
Y
I
--
D
-
A
S
K
N
E
R
T
V
T
F
---
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
48.33
19%
61
- C5 -
-
2M1H
-
?
A:
[1-110]
---------------------------------------------------MLQE
R
V
F
H
IND
R
V
W
L
K
TGAN
T
W
W
P
A
K
V
TSVTGVEGVDG
R
S
S
E
T
---
G
T
S
T
V
T
V
L
T
Y
--
P
-
G
T
Q
-
N
K
A
T
Y
K
---
N
V
D
S
-
H
S
S
A
I
T
F
F
E
P
S
S
E
KAVTAN
E
D
L
L
Q
A
I
R
N
A
E
E
DKESNALRFEPT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
48.26
53%
0
- C6 -
-
4IAJ
-
?
G:
[7-24]
-----------------------------------------------------------------------------------------------------
I
E
I
T
Y
I
--
D
-
A
S
K
N
E
R
T
V
T
F
---
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
47.98
35%
19
- C6 -
-
5O60
-
?
Q:
[19-43]
--------------------------------------------------------------------------------------------
F
S
---
P
G
D
T
V
N
V
H
V
K
VI
E
-
G
S
K
-
E
R
I
Q
V
F
---
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
47.75
33%
115
* C5 *
-
5K7L
2
KCNH1_RAT
A:
[10-722]
LVAPQNT
F
L
E
N
I
V
R
R
SND
T
N
F
V
L
G
N
AQIVDWPIVYSN
D
G
F
C
K
L
SGYHRAEVMQKSSACSFMYGELTD
K
D
T
V
E
K
V
R
Q
T
F
E
N
Y
E
M
N
S
F
E
I
L
M
Y
K
K
N
R
T
P
V
W
F
F
V
K
I
A
P
I
--
R
-
N
E
Q
-
D
K
V
V
L
F
---
L
C
T
F
S
D
I
T
A
F
K
Q
P
I
E
D
D
S
CK
G
W
G
K
F
A
R
L
T
R
A
L
TSSRGVLQQLAPSVQKGENV
H
K
H
S
R
L
A
E
V
L
Q
L
G
S
D
I
LPQYKQE
A
P
K
T
P
P
HIILHYC
V
F
K
T
T
W
D
W
I
I
L
I
L
T
F
Y
T
A
I
L
V
P
Y
N
V
S
FKTRQNNV
A
W
L
V
V
D
S
I
V
D
V
I
F
L
V
D
I
V
L
N
F
H
T
T
F
V
G
PAGEVISD
P
K
L
I
R
M
N
Y
L
K
T
W
F
V
I
D
L
L
S
C
LP
Y
D
V
I
N
A
F
ENVD
E
G
I
S
S
L
F
S
S
L
KVVRLLRLGRV
A
R
K
L
D
H
Y
IEY
G
A
A
V
L
V
L
L
V
C
V
F
G
L
A
A
H
W
M
A
C
I
W
Y
S
I
G
D
Y
E
I
FDEDTKTIRNNS
W
L
Y
Q
L
A
L
D
I
G
T
P
Y
Q
F
NK
W
E
G
G
P
S
K
N
S
V
Y
I
S
S
L
Y
F
T
M
T
S
L
T
SVGFGN
I
A
P
S
T
D
I
E
K
I
F
A
V
A
I
M
M
I
G
S
L
L
Y
A
T
I
F
G
N
V
T
T
I
F
Q
Q
M
Y
A
N
T
N
R
Y
H
E
M
L
N
S
V
R
D
F
L
K
L
Y
QVP
K
G
L
S
E
R
V
M
D
Y
I
V
S
T
W
S
M
SRGID
T
E
K
V
L
Q
I
C
PK
D
M
R
A
D
I
C
V
H
L
N
R
K
V
F
K
E
HPAFRLAS
D
G
C
L
R
A
L
A
M
E
F
Q
T
V
H
C
A
PGDLIYHAGESVD
S
L
C
F
V
V
S
G
S
L
E
V
I
Q
DDEVV
A
I
L
G
K
G
D
V
F
G
D
VFWKEA
T
L
A
Q
SC
A
N
V
R
A
LTY
C
D
L
H
V
I
K
R
D
A
L
Q
K
V
L
E
F
Y
T
A
F
S
H
S
F
S
R
N
LILTYNLR
K
R
I
V
F
R
K
I
S
D
V
K
R
E
E
E
E
R
M
K
RLPP
D
H
P
V
R
R
L
F
Q
R
F
R
Q
Q
K
E
21
HHSearch
46.42
28%
48
- C6 -
-
2Z9I
-
?
A:
[286-311]
-------------------------------------------------------------------------------------------
S
K
A
---
P
G
A
T
V
A
L
T
F
Q
--
D
P
S
G
G
-
S
R
T
V
Q
V
---
T
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
42.70
26%
114
- C6 -
-
5DM6
-
RL19_DEIRA
M:
[27-51]
--------------------------------------------------------------------------------------------
F
R
---
P
G
D
T
V
R
V
D
T
K
VR
E
-
G
N
R
-
T
R
S
Q
A
F
---
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
42.65
16%
-141
- C6 -
-
1TE0
-
DEGS_ECOLI
A:
[325-349]
--------------------------------------------------------------------------------------------
I
R
---
P
G
S
V
I
P
V
V
V
M
--
R
-
D
D
K
-
Q
L
T
L
Q
V
---
T
I
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
42.35
26%
-
- C6 -
-
4WFA
-
RL19_STAA8
M:
[22-46]
--------------------------------------------------------------------------------------------
F
R
---
P
G
D
T
L
R
V
H
V
R
II
E
-
G
T
R
-
E
R
I
Q
V
F
---
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
41.94
14%
99
- C5 -
-
2JZ2
-
?
A:
[1-66]
-------------------------------------------------------------------MIFPG
A
T
V
R
V
TNVDDTYYR
F
E
G
L
V
Q
R
V
---
S
D
G
K
A
A
V
L
F
E
--
N
-
G
N
W
-
D
K
L
V
T
F
R
LS
E
L
E
A
-
V
K
P
I
L
E
H
H
H
H
H
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
41.19
24%
-
- C6 -
-
4IC6
-
DEGP8_ARATH
A:
[420-444]
--------------------------------------------------------------------------------------------
Y
S
---
V
G
D
K
V
T
L
K
I
K
--
R
-
G
N
E
-
D
L
E
L
K
I
---
S
L
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
39.04
24%
-309
- C6 -
-
2QCP
-
CUSF_ECOLI
X:
[54-70]
--------------------------------------------------------------------------------------------
I
K
---
T
G
D
K
V
A
F
N
F
V
--
Q
-
Q
G
N
-
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------