@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TYU2: (2017-12-15 )
MLETAIEVLEKCAQLVTASEEWGYESVTMEKEEIEMGMLPEDVTLPRLVMTHLYIYCAPEDGKDYVVYFITDITSQREFVRGLLVEGRLVWSQIGGTNE
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..--.......10........20........30-....--.-...40-.--...--.....50........60.........70.------------.......80-..-...-...90........---------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ML--
E
T
A
I
E
V
L
E
K
C
A
Q
L
V
T
A
S
E
EWGYESVTM
E
K
-
E
E
IE--M-GMLP--E--DV
T
--
L
P
R
L
V
M
T
H
L
Y
I
Y
C
APE-DGK
D
Y
V
V
Y
F
I
TD------------IT
S
Q
R
E
F
V
R
-
G
L
-
L
VE-
G
R
L
V
W
S
QIGGTNE---------------------------------------------------
15
Fugue
73.24
31%
-14
- C- -
-
4LYL
-
UNGI_BPPB2
B:
[3-84]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
--
S
D
I
I
E
K
-
E
T
G
K
Q
L
V
I
Q
------
E
S
I
L
M
L
P
-
E
E
V
E
EV
I
-
G
N
K
P
--
E
--
S
-----------
D
I
L
V
H
T
A
Y
D
-
E
S
T
D
E
N
V
M
L
L
T
S
------------
D
A
P
E
Y
K
---------
P
-
W
A
L
V
I
Q
D
S
N
G
E
N
K
I
K
M
L-----------------------------------------------
14
Fugue
70.41
24%
-15
- C3 -
-
1UGI
2
UNGI_BPPB2
A:
[2-84]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
N
L
S
D
I
I
E
K
E
T
G
K
Q
L
V
I
Q
E
S
I
L
M
L
P
-
E
E
V
E
E
V
I
-
G
N
K
P
--
E
--
S
-----------
D
I
L
V
H
T
A
Y
D
-
E
S
T
D
E
N
V
M
L
L
T
S
------------
D
A
P
E
Y
K
---------
P
-
W
A
L
V
I
Q
D
S
N
G
E
N
K
I
K
M
L-----------------------------------------------
3
PsiBlast_PDB
57.23
37%
-
* C6 *
-
4XAM
-
CO4B_HUMAN
A:
[270-309]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
Y
G
K
P
V
-
Q
G
V
A
Y
V
R
F
G
L
L
D
------------
E
D
G
K
K
T
F
F
R
-
G
L
-
E
S
Q
-
T
K
L
V
N
G
Q
---------------------------------------------------------
16
Fugue
49.27
16%
-138
- C2 -
-
5TJ5
-
VATO_YEAST
B:
[1-213]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MN
K
E
S
K
D
D
D
M
S
L
G
K
F
S
F
S
H
F
L
Y
YVY
G
L
Y
K
L
F
T
G
H
G
S
D
I
N
F
GK
F
L
L
R
T
S
P
Y
M
W
--
A
N
--
L
G
I
A
L
C
V
G
L
S
V
V
G
A
A
W
G
I
F
--
I
T
G
S
-
S
M
I
G
--
A
-
G
V
R
A
--
P
--
R
I
T
---
T
K
N
L
I
S
I
I
F
C
E
V
V
A
I
-
Y
G
L
I
I
A
I
V
F
S
S
K
--------------------
S
-
N
L
-
Y
T
G
-
Y
S
L
F
W
A
G
I
T
V
G
A
S
N
L
I
C
G
I
A
V
G
I
T
G
A
T
A
A
I
SFV
K
I
L
V
I
E
I
F
G
S
I
L
G
L
L
G
L
I
V
G
L
L
M
A
G
KASEFQ
22
HHSearch
47.90
22%
-32
- C3 -
-
2JOZ
-
YXEF_BACSU
A:
[31-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
V
K
S
A
T
V
T
F
T
E
-
D
E
V
V
--
E
T
E
V
M
E
GR
G
--
E
V
Q
--
L
P
F
M
A
Y
K
-
V
I
S
Q
--
S
T
-
D
G
S
I
E
I
Q
Y
L
G
P
Y
------------
Y
P
L
K
S
T
L
K
R
-
G
---
E
N
-
G
T
L
I
W
E
Q
N
G
Q
R
-----------------------------------------------------
4
PsiBlast_PDB
45.14
37%
-21
- C6 -
-
5JPM
-
CO4A_HUMAN
A:
[251-290]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
Y
G
K
P
V
-
Q
G
V
A
Y
V
R
F
G
L
L
D
------------
E
D
G
K
K
T
F
F
R
-
G
L
-
E
S
Q
-
T
K
L
V
N
G
Q
---------------------------------------------------------
10
Fugue
44.25
20%
-17
- C3 -
-
2NAS
-
?
A:
[1-110]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
--
P
S
---
F
A
P
G
T
L
V
W
L
K
Q
D
R
F
P
W
W
P
G
F
V
M
D
P
-
D
E
V
R
--
D
-
I
T
L
P
--
E
GS
D
V
W
--
V
C
C
L
P
R
D
S
L
T
L
S
A
A
N
S
-
E
D
E
G
Q
I
R
Y
F
L
P
D
RDEG
M
M
E
E
G
KLD
A
S
C
A
V
A
I
E
E
-
A
I
-
Q
L
Y
-
E
E
Q
L
K
A
Q
A
G
G
T
N
E
---------------------------------------------------
25
HHSearch
43.76
11%
-149
* C3 *
-
2LH9
-
TDRD7_MOUSE
A:
[57-83]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
--
P
R
L
Q
G
E
Y
R
S
L
T
G
D
W
I
P
F
K
Q
L
G
Y
P
T
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
43.03
23%
26
- C3 -
-
4Q6V
-
LPOB_SALTY
A:
[77-211]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YD
W
N
G
A
M
Q
P
L
V
S
K
M
L
Q
ADGVTAG
S
V
L
L
V
D
S
VNNRTN
G
S
--
L
N
A
N
E
A
T
E
T
L
R
N
A
L
A
N
N
G
K
F
T
L
V
S
V
Q
Q
L
S
M
A
K
Q
Q
--
L
-
G
L
S
P
--
Q
--
D
------
S
L
G
T
R
S
K
A
I
G
I
A
R
N
-
V
G
A
Q
Y
V
L
Y
S
S
A
S
------------
G
N
V
N
A
P
A
L
Q
M
Q
L
M
L
V
Q
T
G
E
I
I
W
S
G
K
G
A
V
Q
Q
---------------------------------------------------
6
PsiBlast_PDB
41.81
37%
-25
- C6 -
-
5JTW
-
?
A:
[251-290]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
Y
G
K
P
V
-
Q
G
V
A
Y
V
R
F
G
L
L
D
------------
E
D
G
K
K
T
F
F
R
-
G
L
-
E
S
Q
-
T
K
L
V
N
G
Q
---------------------------------------------------------
7
PsiBlast_PDB
41.59
50%
-241
* C4 *
-
1WNS
-
DPOL_THEKO
A:
[507-558]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
C
A
E
S
V
T
A
---
W
G
R
E
Y
I
T
M
T
I
-
K
E
I
E
--------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
41.35
37%
-29
- C6 -
-
4FXK
-
?
A:
[251-290]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
Y
G
K
P
V
-
Q
G
V
A
Y
V
R
F
G
L
L
D
------------
E
D
G
K
K
T
F
F
R
-
G
L
-
E
S
Q
-
T
K
L
V
N
G
Q
---------------------------------------------------------
1
PsiBlast_PDB
40.22
37%
-16
- C6 -
-
4FXG
-
CO4A_HUMAN
A:
[251-290]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
Y
G
K
P
V
-
Q
G
V
A
Y
V
R
F
G
L
L
D
------------
E
D
G
K
K
T
F
F
R
-
G
L
-
E
S
Q
-
T
K
L
V
N
G
Q
---------------------------------------------------------
17
Fugue
39.76
18%
31
- C3 -
-
2GRG
-
YN034_YEAST
A:
[1-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
SS
I
P
I
T
E
V
L
P
R
A
V
G
S
L
T
F
D
E
N
Y
N
L
L
D
T
S
G
V
A
-
K
V
I
E
--
K
-
S
P
I
A
--
E
--
I
I
R
--
K
S
N
A
E
L
G
R
-
L
G
Y
S
V
Y
E
-
D
A
Q
Y
I
G
H
A
F
K
K
A
------------
G
H
F
I
V
Y
F
T
P
-
K
N
-
K
-
N
-
R
E
G
V
V
P
P
V
G
I
T
N
----------------------------------------------------
19
Fugue
39.64
17%
19
- C1 -
-
4RU0
4
?
A:
[30-444]
GPD
Q
Q
F
F
P
L
ATYRVGAY
A
S
S
G
V
Q
V
W
A
G
M
I
D
Y
L
N
Y
I
N
QVEGGING
V
K
L
V
W
Q
E
C
E
TEWT
A
E
K
G
I
E
C
Y
E
R
F
K
NGLDGAPVAVYQPNG
A
P
A
A
Y
A
L
S
E
R
A
E
V
D
K
I
P
L
I
T
L
GYGRTEATDGTVFPYNFPVMLT
F
Y
S
E
A
S
T
L
V
N
Y
I
A
Q
R
E
GGFDRLKG
K
K
I
A
T
L
Y
HDSAYGRET
L
G
P
L
K
L
L
A
E
K
YG
F
E
N
I
Q
I
P
V
A
D
PGNEQ
S
A
Q
W
R
Q
I
R
Q
Q
NPDWVFLRTWG
V
S
T
P
V
A
V
K
T
A
A
R
F
GFPVDH
I
I
G
D
IWASSSEDVLPAGAAAKG
Y
L
A
L
T
P
Y
P
A
G
SDF
E
I
H
K
R
L
K
Q
YILDTGKSDLKDLKNFGS
V
Y
Y
N
S
G
L
V
N
A
A
V
A
V
E
A
I
--
R
T
A
Q
G
K
F
G
K
-
R
P
L
N
G
E
E
G
R
W
G
L
E
H
L
N
I
D
D
-
A
R
L
K
--
D
M
G
Y
L
G
LM
Q
--
N
L
K
--
L
S
C
R
D
H
E
G
G
G
A
A
R
V
Q
Q
W
D
G
A
N
W
T
L
I
S
-
E
W
------------
I
A
A
D
R
A
L
L
R
-
P
L
-
I
D
E
-
K
A
A
A
F
A
K
E
K
R
L
V
P
RTCN-----------------------------------------------
5
PsiBlast_PDB
39.14
37%
-26
- C6 -
-
5JPN
-
?
A:
[251-290]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
Y
G
K
P
V
-
Q
G
V
A
Y
V
R
F
G
L
L
D
------------
E
D
G
K
K
T
F
F
R
-
G
L
-
E
S
Q
-
T
K
L
V
N
G
Q
---------------------------------------------------------
20
HHSearch
35.87
11%
-193
- C3 -
-
3RCO
-
TDRD7_HUMAN
A:
[31-83]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
--
P
R
L
Q
G
E
Y
R
S
L
T
G
D
W
I
P
F
K
Q
L
G
F
P
T
L
E
---------------------
A
Y
L
R
S
V
P
A
V
V
R
I
E
----
T
S
-
R
-
S
-
G
E
I
T
C
Y
A
M
A
----------------------------------------------------------------------------------------------
8
PsiBlast_PDB
35.28
50%
-140
- C4 -
-
1WN7
-
DPOL_THEKO
A:
[507-556]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
C
A
E
S
V
T
A
---
W
G
R
E
Y
I
T
M
T
I
-
K
E
I
E
--------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
28.13
31%
41
- C4 -
-
1SY9
-
B:
[5-23]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
F
R
R
I
A
R
L
V
G
V
L
R
E
W
A
Y
R
-------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
27.62
50%
-
- C4 -
-
4K8Z
-
?
A:
[507-529]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
C
A
E
S
V
T
A
---
W
G
R
E
Y
I
T
M
T
I
-
K
E
I
E
--------------------------------------------------------------------------------------------------------------------------------------------