@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3U2P8: (2017-12-23 )
MKDFYSVNELAEQLGVTTRSIRNYLHEGKLKGTKVGGQWKFSERNLFEFLYGDQAEEAAKEMQRFMLNAPITMRFNLQYRDFTAINQFREQLVQYHNDVYANKKDRLLQYDLYKDNHAEILIGGNFNYVVNFSQWINEKLLIQTDISLVS
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30-...-.--.-------.-----..-.40.......-.50.....----------...60..-----......70.------------.......80---------.........90........100--.....--...110.......120--........130.......140.......150----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKDFY
S
V
N
E
L
A
E
Q
LG
V
T
T
R
S
I
R
N
Y
L
H
EGKL--KGT-K--V-------G-----
G
Q
-
W
KFSER
N
L
F
E
-
F
L
YGD
Q
A
E
----------
E
A
A
K
E
M
Q
-----
R
F
MLNA
P
I
T
------------
M
R
F
N
L
Q
YR----------
D
F
T
A
I
N
Q
F
R
E
Q
L
V
Q
Y
H
N
D
VYA---NKKD
R
--
L
L
Q
Y
D
LYKDNH
A
E
I
L
---
I
GGN
F
N
Y
V
V
N
F
S
Q
WINE
K
L
L
I
Q
TDISLVS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
65.34
38%
-107
- C2 -
-
4J2N
-
?
A:
[3-52]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
P
R
A
S
I
Q
Q
T
A
D
Y
L
G
V
S
T
K
T
V
R
N
Y
I
A
A
G
K
L
--
K
A
V
-
R
--
L
-------
G
-----
P
R
-
L
I
R
V
E
R
D
S
V
E
-
A
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
61.78
25%
-87
* C2 *
-
3HH0
-
?
A:
[1-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
W
L
I
S
E
F
A
S
V
G
D
V
T
V
R
A
L
R
Y
Y
D
K
I
N
L
L
--
K
P
S
D
Y
T-
E
-------
G
-----
G
H
-
R
L
Y
T
K
D
D
L
Y
V
-
L
Q
Q
I
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
61.69
20%
-12
- C2 -
-
3JBL
-
NLRC4_MOUSE
A:
[93-1024]
VTEED
L
N
V
L
A
Q
N
L
K
D
L
Y
NSPAFLNFYPLGEDIDIIFNLEKTFTEPI
M
W
K
K
D
HRHHRV
E
Q
L
T
LGSLLEALKSPCL
I
E
G
E
S
GKGKST
L
L
Q
R
I
A
M
L
W
A
S
GGCRALKGFR
L
V
F
F
I
H
LRSARGGLFE
T
L
Y
D
Q
LLNIPDFIS
K
P
T
F
K
A
L
L
L
K
LHKE
V
L
F
L
L
D
G
YNEFHPQNCPEIEAL
I
K
E
N
H
R
F
K
N
M
V
I
-
V
T
T
T
T
E
C
L
R
H
I
R
H
V
G
A
L
--
T
-
A
-
E
--
V
-------
G
-----
D
M
-
T
E
D
S
A
K
D
L
I
E
A
V
L
V
P
D
Q
V
E
----------
R
L
W
A
Q
I
Q
ES
R
C
L
R
N
L
M
K
T
P
L
F
------------
V
V
I
T
C
A
I
Q
MGRQEFQAHT
Q
T
M
L
F
Q
T
F
Y
D
L
L
I
Q
K
N
S
H
R
Y
R
---
G
G
A
S
G
D
F
A
R
S
L
D
Y
C
G
D
L
A
L
E
G
V
---
F
A
H
K
F
D
F
E
P
E
H
G
S
S
M
N
E
D
V
L
V
T
I
G
L
L
C
K
Y
T
A
Q
R
L
K
P
T
YKFFHKSFQ
E
Y
T
A
G
R
R
L
S
S
L
L
T
SKE
P
E
E
V
S
K
G
N
S
Y
L
N
K
M
VSISDITSLYGN
L
L
L
Y
T
C
G
S
STEAT
R
A
V
M
R
H
L
A
M
VYQHGSLQGLS
V
T
K
R
P
LWRQEI
Q
S
L
R
N
TTEQDVLKAIN
V
N
S
F
V
E
C
G
I
N
L
F
S
E
SMSKSDL
S
Q
E
F
E
A
F
FQG
K
S
L
Y
I
N
SENIPDYLFDFFEYLPNCASALDFV
K
L
D
F
Y
ERATP
P
R
A
V
S
L
F
F
N
W
KQEFK
T
L
E
V
T
L
R
DINKLNKQD
I
K
Y
L
G
K
I
F
S
S
A
T
N
L
R
L
H
I
K
RCAAMAGRL
S
S
V
L
R
T
CKNMH
T
L
M
V
E
ASPLTTDD
E
Q
Y
I
T
S
V
TGLQ
N
L
S
I
HRLH
T
Q
Q
L
PGGLIDSLGNLKNLE
R
L
I
L
D
D
I
R
M
N
E
E
D
A
K
N
L
A
E
G
L
R
S
LKKMR
L
L
H
L
T
HLSDIGE
G
M
D
Y
I
V
K
S
L
S
EESCDLQEMKLVACCLT
A
N
S
V
K
V
L
A
Q
N
LHNLIKLSILDISE
N
Y
L
EKDGNE
A
L
Q
E
L
I
G
R
LGVLGELT
T
L
M
L
P
W
C
WDVHTS
L
P
K
L
L
K
Q
L
E
GTPGLAKLGLKNWRLRDE
E
I
K
S
L
G
E
F
L
E
M
NPLRDLQ
Q
L
D
L
A
GHCVS
S
D
G
W
L
Y
F
M
N
V
FENLKQLV
F
F
D
F
S
T
EEFLPDA
A
L
V
R
K
L
S
Q
V
L
S
K
LTLLQEVKLTGWEFDDYDISAIKGT
F
K
L
V
TA
39
HHSearch
59.44
22%
-72
- C2 -
-
5GPE
-
?
G:
[1-53]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
M
R
I
G
E
L
G
K
K
A
D
C
L
V
Q
T
V
R
F
Y
E
S
E
G
L
L
--
P
E
P
-
A
RS
E
-------
G
-----
N
F
-
R
L
Y
D
E
V
H
L
Q
R
-
L
L
F
I
R
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
HHSearch
59.25
26%
-98
- C2 -
-
3GP4
1
?
A:
[2-52]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
N
I
K
E
A
S
E
K
S
G
V
S
A
D
T
I
R
Y
Y
E
R
I
G
L
I
--
P
P
I
H
R
N
-
E
-------
S
-----
G
V
-
R
K
F
G
A
E
D
L
R
W
-
I
L
F
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
HHSearch
58.52
24%
-81
- C2 -
-
5D8C
2
Y186_HAEIN
A:
[3-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
Y
T
T
A
K
A
A
E
K
I
G
I
S
A
Y
T
L
R
F
Y
D
K
E
G
L
L
--
P
N
V
-
G
RD
E
-------
Y
-----
G
N
-
R
R
F
T
D
K
D
L
Q
W
-
L
S
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
58.49
28%
-46
- C2 -
-
4J2N
-
?
A:
[3-56]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
P
R
A
S
I
Q
Q
T
A
D
Y
L
G
V
S
T
K
T
V
R
N
Y
I
A
A
G
K
L
--
K
A
V
-
R
--
L
-------
G
-----
P
R
L
I
R
V
E
R
D
S
V
E
A
-
L
M
R
P
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
58.33
12%
0
- C2 -
-
5AF3
1
VPB45_MYCTU
A:
[11-238]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRF
D
V
P
L
Y
T
L
A
E
A
S
R
Y
L
V
V
P
R
A
T
L
A
T
W
A
D
Q
P
I
I
T
A
L
P
H
-
P
--
T
-------
G
-----
S
H
-
A
R
L
P
F
V
G
I
A
E
-
A
Y
V
L
N
A
F
R
R
A
GVPMQRI
R
P
S
L
D
W
L
I
-----
K
N
V
G
P
H
A
L
A
SQDLCTD
G
A
E
V
L
W
R
F
A
E
R
S
G
----------
E
G
S
P
D
D
L
V
V
R
G
L
I
V
P
R
S
G
Q
Y
V
F
K
E
I
V
E
H
Y
--
L
Q
Q
I
S
F
A
D
D
N
L
A
S
M
I
R
L
P
Q
Y
G
D
A
N
V
V
L
D
P
R
R
G
Y
G
Q
P
V
F
D
G
S
G
V
R
V
A
D
V
L
G
P
L
R
A
GAT
F
Q
A
V
A
D
D
Y
GVT
P
D
Q
L
R
D
A
L
D
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
HHSearch
57.57
22%
-83
- C2 -
-
1Q06
-
CUER_ECOLI
A:
[1-57]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
I
S
D
V
A
K
I
T
G
L
T
S
K
A
I
R
F
Y
E
E
K
G
L
V
--
T
P
P
-
M
R
S
E
-------
N
-----
G
Y
-
R
T
Y
T
Q
Q
H
L
N
E
-
L
T
L
L
R
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
56.95
24%
-62
- C2 -
-
5E01
2
Y186_HAEIN
B:
[2-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
M
T
Y
T
T
A
K
A
A
E
K
I
G
I
S
A
Y
T
L
R
F
Y
D
K
E
G
L
L
--
P
N
V
-
G
RD
E
-------
Y
-----
G
N
-
R
R
F
T
D
K
D
L
Q
W
-
L
S
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
55.93
27%
-19
- C2 -
-
3QAO
3
?
A:
[1-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
A
M
Q
I
K
E
L
A
E
L
T
G
V
S
V
R
T
L
H
H
Y
D
K
I
G
L
L
--
V
P
Q
-
K
D
D
W
-------
N
-----
G
Y
-
R
I
Y
S
E
K
D
V
D
K
-
L
Q
Q
I
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
HHSearch
55.27
20%
-105
- C2 -
-
2ZHG
1
SOXR_ECOLI
A:
[10-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
L
T
P
G
E
V
A
K
R
S
G
V
A
V
S
A
L
H
F
Y
E
S
K
G
L
I
--
T
S
I
-
R
N
-
S
-------
G
-----
N
Q
-
R
R
Y
K
R
D
V
L
R
Y
-
V
A
I
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
53.39
25%
-49
- C2 -
-
4J2N
-
?
A:
[4-55]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
P
R
A
S
I
Q
Q
T
A
D
Y
L
G
V
S
T
K
T
V
R
N
Y
I
A
A
G
K
L
--
K
A
V
-
R
--
L
G------
P
-----
R
L
-
I
R
V
E
R
D
S
V
E
A
-
L
M
R
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
52.23
25%
-58
- C2 -
-
4J2N
-
?
C:
[4-55]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
P
R
A
S
I
Q
Q
T
A
D
Y
L
G
V
S
T
K
T
V
R
N
Y
I
A
A
G
K
L
--
K
A
V
-
R
--
L
G------
P
-----
R
L
-
I
R
V
E
R
D
S
V
E
A
-
L
M
R
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
50.72
20%
-82
- C2 -
-
4LHF
-
VCOX_BPP2
A:
[9-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
A
I
P
Y
Q
E
F
A
K
L
I
G
K
S
T
G
A
V
R
R
M
I
D
K
G
K
L
--
P
V
I
-
D
--
M
T
DPQSAS
A
-----
G
E
-
Y
W
V
Y
L
P
A
W
N
N
-
G
L
K
L
A
Y
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
49.93
14%
-8
- C2 -
-
1JBG
-
MTA_BACSU
A:
[2-107]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
Q
V
K
Q
V
A
E
I
S
G
V
S
I
R
T
L
H
H
Y
D
N
I
E
L
L
--
N
P
S
-
A
--
L
TD-----
A
-----
G
Y
-
R
L
Y
S
D
A
D
L
E
R
-
L
Q
Q
I
L
F
F
K
----------
E
I
G
F
R
L
D
-----
E
I
K
E
M
L
D
H
P
--------------------------------------
N
F
D
R
K
A
A
L
Q
S
Q
K
E
---
I
L
M
K
K
--
K
Q
R
M
D
E
M
I
Q
T
I
D
R
T
L
---
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
49.87
15%
-8
- C2 -
-
1JBG
-
MTA_BACSU
A:
[2-107]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
Q
V
K
Q
V
A
E
I
S
G
V
S
I
R
T
L
H
H
Y
D
N
I
E
L
L
--
N
P
S
-
A
--
L
TD-----
A
-----
G
Y
-
R
L
Y
S
D
A
D
L
E
R
-
L
Q
Q
I
L
F
F
K
----------
E
I
--
G
F
R
-----
L
D
E
I
K
E
M
L
D
------------
H
P
N
F
D
R
K
A
----------
A
L
Q
S
Q
K
E
I
L
M
K
K
K
Q
R
M
D
E
M
I
Q
---
T
I
D
R
T
--
L
L
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
49.13
47%
-178
- C2 -
-
2X48
-
Y56_SIRV1
A:
[32-52]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
V
Q
Q
I
A
N
A
L
G
V
S
E
R
K
V
R
R
Y
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
45.83
44%
-24
- C1 -
-
5WU7
-
?
A:
[373-408]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
E
L
A
E
R
S
G
I
K
T
V
T
I
S
N
F
L
D
E
--
F
--
K
G
T
-
R
--
Y
-------
G
V
E
L
P
E
G
S
-
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
45.31
16%
33
- C2 -
-
4LHF
-
VCOX_BPP2
A:
[7-87]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------L
M
T
D
A
I
P
Y
Q
E
F
A
K
L
I
G
K
S
T
G
A
V
R
R
M
I
D
K
G
K
L
--
P
V
I
-
D
--
M
T
DPQSAS
A
-----
G
E
-
Y
W
V
Y
L
P
A
W
N
N
-
G
L
K
L
A
Y
E
S
----------
R
P
K
E
I
R
D
-----
G
W
L
M
W
L
G
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------