@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3XW81: (2017-12-29 )
MNDLLATIFTGIIIDENEKNYFVQKNGQTFGLSKSEGEHKIGEAVEGFGYQNQKHENRITTQIPKSRIGHYAFGIVTATRKDLGAFVDIGLPDKDFVVSLDELPTMTELWPKKGDRLMISLRVDAKDRIWGSLADEKIFKSLSKYGTEEMKNKDVIGTAYRLKLTGTYVLTEDFYLGFIHPSERYNEPRLGEQIKGRVIGVRPDGVLNLSLKPRAYEAISDDAQMILTILERSADQQINFTDKSDPEEIMKAFGISKGAFKRALGNLLKQGLITQENGVTKLVKKSN
Atome Classification :
(20 SA)
----------------------.........10.......--.20..----......-30.....-...40........50....-....60........70..---......-80--.........90........100-.....-----..110.......120.-......130.......140.......150.--......160--.....---....-170--.--......180...---....190.......200---------------.-......210.--......----220-------.------........-----230.......240--------.....--------..250..----.....260..--.....270......------------------.280.....-------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------MN
D
L
L
A
T
I
F
T
G
I
I
IDENE--K
N
Y
F
V
----QKNG
Q
T
-FGLSKSE-GE
H
K
I
G
E
A
V
E
GFGYQNQKH-ENRITTQI
P
K
S
RIGH
Y
A
F
---
G
I
V
T
A
T
-
R
---
K
D
L
G
A
F
V
DIGLPDKD
F
V
V
S
L
DE-LP
T
M
T
-----
E
LWPKKG
D
R
L
M
I
S
L
R
V-DA
K
D
R
I
W
G
S
L
A
D
E
K
I
F
K
S
L
S
KYG
T
E
E
MKNK--DVI
G
T
A
Y
----
R
L
K
L
T
---
G
T
Y
V
-
L
TE--D--
F
Y
L
G
F
I
H
P
S
ERY---NEPR
L
G
E
Q
IK
G
R
V
I
G
VR---------------P-D
G
V
L
N
LSLKP--
R
A
Y
EAI----S---------D------
D
A
Q
M
I
L
T
I
-----
L
E
RSAD
Q
Q
INFTD--------KS
D
P
E
--------
E
I
M
K
A
FG----IS
K
G
A
F
K
R
A
L
--
G
N
L
L
K
QGLITQEN
G
------------------
V
T
K
L
VKKSN-------------------------
21
HHSearch
76.86
54%
-46
- C2 -
-
3GO5
10
?
A:
[2-285]
----------------------
M
N
T
N
L
A
S
F
I
V
G
L
I
I
D
E
N
D
--
R
F
Y
F
V
----
Q
K
D
G
Q
T
-
Y
A
L
A
K
E
E
-
G
Q
H
T
V
G
D
T
V
K
G
F
A
Y
T
D
M
K
Q
-
K
L
R
L
T
T
L
E
V
T
A
T
Q
D
Q
F
G
W
---
G
R
V
T
E
V
-
R
---
K
D
L
G
V
F
V
D
T
G
L
P
D
K
E
I
V
V
S
L
D
I
-
L
P
E
L
K
-----
E
L
W
P
K
K
G
D
Q
L
Y
I
R
L
E
V
-
D
K
K
D
R
I
W
G
L
L
A
Y
Q
E
D
F
Q
R
L
A
R
P
A
Y
N
N
M
Q
N
Q
--
N
W
P
A
I
V
Y
----
R
L
K
L
S
---
G
T
F
V
-
Y
L
P
E-
N
--
N
M
L
G
F
I
H
P
S
E
R
Y
---
A
E
P
R
L
G
Q
V
L
D
A
R
V
I
G
F
R
E--------------
V
-
D
R
T
L
N
L
S
L
K
P
--
R
S
F
E
M
L
----
E
---------
N
------
D
A
Q
M
I
L
T
Y
-----
L
E
-
S
N
G
G
F
M
T
L
N
D
--------
K
S
S
P
D
--------
D
I
K
A
T
F
G
----
I
S
K
G
Q
F
K
K
A
L
--
G
G
L
M
K
A
G
K
I
K
Q
D
Q
F
------------------
G
T
E
L
I
-----------------------------
1
PsiBlast_PDB
76.49
52%
-42
- C2 -
-
3GO5
10
?
A:
[3-285]
-----------------------
N
T
N
L
A
S
F
I
V
G
L
I
I
D
E
N
D
--
R
F
Y
F
V
----
Q
K
D
G
Q
T
-
Y
A
L
A
K
E
E
-
G
Q
H
T
V
G
D
T
V
K
G
F
A
Y
T
D
M
K
Q
-
K
L
R
L
T
T
L
E
V
T
A
T
Q
D
Q
F
G
W
---
G
R
V
T
E
V
-
R
---
K
D
L
G
V
F
V
D
T
G
L
P
D
K
E
I
V
V
S
L
D
I
-
L
P
E
L
K
-----
E
L
W
P
K
K
G
D
Q
L
Y
I
R
L
E
V
-
D
K
K
D
R
I
W
G
L
L
A
Y
Q
E
D
F
Q
R
L
A
R
P
A
Y
N
N
M
Q
N
Q
--
N
W
P
A
I
V
Y
----
R
L
K
L
S
---
G
T
F
V
Y
L
P
E
--
N
--
N
M
L
G
F
I
H
P
S
E
R
Y
---
A
E
P
R
L
G
Q
V
L
D
A
R
V
I
G
F
R
---------------
E
V
D
R
T
L
N
L
S
L
K
P
--
R
S
F
E
M
L
----
E
---------
N
------
D
A
Q
M
I
L
T
Y
-----
L
E
-
S
N
G
G
F
M
T
L
N
D
--------
K
S
S
P
D
--------
D
I
K
A
T
F
G
----
I
S
K
G
Q
F
K
K
A
L
--
G
G
L
M
K
A
G
K
I
K
Q
D
Q
F
------------------
G
T
E
L
I
-----------------------------
5
PsiBlast_PDB
43.74
38%
-230
- C3 -
-
5D4R
2
ARAR_BACSU
A:
[52-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
M
Q
Q
F
G
----
V
S
R
H
T
I
R
K
A
I
--
G
D
L
V
S
Q
G
L
L
Y
S
V
Q
G
----------------------------------------------------
2
PsiBlast_PDB
43.34
38%
-245
- C3 -
-
4EGY
2
ARAR_BACSU
A:
[52-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
M
Q
Q
F
G
----
V
S
R
H
T
I
R
K
A
I
--
G
D
L
V
S
Q
G
L
L
Y
S
V
Q
G
----------------------------------------------------
19
PsiBlast_CBE
42.97
38%
-203
- C3 -
-
4EGZ
2
ARAR_BACSU
B:
[52-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
M
Q
Q
F
G
----
V
S
R
H
T
I
R
K
A
I
--
G
D
L
V
S
Q
G
L
L
Y
S
V
Q
G
----------------------------------------------------
17
PsiBlast_CBE
42.66
38%
-221
* C3 *
-
5D4R
2
ARAR_BACSU
B:
[52-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
M
Q
Q
F
G
----
V
S
R
H
T
I
R
K
A
I
--
G
D
L
V
S
Q
G
L
L
Y
S
V
Q
G
----------------------------------------------------
18
PsiBlast_CBE
42.44
38%
-231
- C3 -
-
4H0E
2
ARAR_BACSU
B:
[52-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
M
Q
Q
F
G
----
V
S
R
H
T
I
R
K
A
I
--
G
D
L
V
S
Q
G
L
L
Y
S
V
Q
G
----------------------------------------------------
20
PsiBlast_CBE
41.92
38%
-233
- C3 -
-
4EGY
2
ARAR_BACSU
B:
[52-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
M
Q
Q
F
G
----
V
S
R
H
T
I
R
K
A
I
--
G
D
L
V
S
Q
G
L
L
Y
S
V
Q
G
----------------------------------------------------
3
PsiBlast_PDB
41.88
38%
-214
- C3 -
-
4EGZ
2
ARAR_BACSU
A:
[52-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
M
Q
Q
F
G
----
V
S
R
H
T
I
R
K
A
I
--
G
D
L
V
S
Q
G
L
L
Y
S
V
Q
G
----------------------------------------------------
4
PsiBlast_PDB
41.30
38%
-222
- C3 -
-
4H0E
2
ARAR_BACSU
A:
[52-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
M
Q
Q
F
G
----
V
S
R
H
T
I
R
K
A
I
--
G
D
L
V
S
Q
G
L
L
Y
S
V
Q
G
----------------------------------------------------
6
PsiBlast_PDB
41.09
38%
-216
- C3 -
-
5D4S
2
ARAR_BACSU
A:
[52-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
M
Q
Q
F
G
----
V
S
R
H
T
I
R
K
A
I
--
G
D
L
V
S
Q
G
L
L
Y
S
V
Q
G
----------------------------------------------------
16
PsiBlast_CBE
40.78
38%
-226
- C3 -
-
5D4S
2
ARAR_BACSU
B:
[52-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
M
Q
Q
F
G
----
V
S
R
H
T
I
R
K
A
I
--
G
D
L
V
S
Q
G
L
L
Y
S
V
Q
G
----------------------------------------------------
52
Fugue
35.54
16%
48
- C2 -
-
4MTN
-
?
A:
[5-406]
GN
E
V
L
R
I
V
D
S
I
H
R
D
KSID
K
E
I
V
F
E
G
V
E
Q
A
I
L
S
A
A
R
K
H
F
G
E
--
E
E
V
I
E
V
H
I
D
R
T
S
G
Q
P
M
V
K
T
N
G
R
E
I
D
R
D
E
L
G
D
I
L
G
R
I
S
A
Q
T
K
Q
V
M
I
Q
K
I
R
E
A
E
R
D
T
L
F
D
E
Y
A
Q
L
RG
Q
I
V
S
G
T
V
T
---
R
N
E
G
S
A
I
T
V
N
I
G
K
A
E
A
I
L
P
R
S
E
M
I
P
G
E
S
-----
H
R
P
N
E
R
I
R
A
V
V
L
E
V
K
K
M
G
P
R
V
R
V
V
L
S
R
A
H
P
D
F
V
R
R
L
L
E
L
E
I
P
E
V
N
E
R
II
E
I
R
S
L
A
R
EAG
Y
R
T
K
V
A
---
V
S
C
A
-
D
S
N
--
I
--
D
P
V
G
A
C
V
G
V
R
G
A
---
R
I
R
N
V
G
E
E
L
G
G
E
R
I
E
V
V
R
W
N
DSLQV
L
V
P
N
A
M
Q
P
-
S
E
V
E
D
V
I
L
C
P
ML
G
R
V
L
V
L
----
V
---------
R
------
D
D
Q
L
S
L
A
I
GKRG
Q
N
V
R
L
A
S
K
L
V
G
W
D
I
D
V
M
T
R
E
E
L
D
Q
Q
L
D
--------
Q
A
V
V
A
Y
S
----
Q
I
P
G
V
S
E
E
L
A
--
E
G
L
V
S
Q
G
F
L
S
F
E
D
L
S
V
IE
P
D
E
L
M
E
M
G
SLT
Q
E
Q
A
D
V
I
V
E
Y
A
E
R
E
S
E
R
I
E
K
E
Q
D
L
R
R
A
T
E
K
A
ERQSQE
13
PsiBlast_PDB
33.60
36%
-108
- C3 -
-
4U0V
1
YVOA_BACSU
A:
[42-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
A
E
Q
F
G
----
I
S
R
M
T
V
R
Q
A
L
--
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
------------------
R
G
T
F
V
S
K
---------------------------
15
PsiBlast_PDB
33.24
36%
-105
- C3 -
-
4WWC
4
YVOA_BACSU
A:
[42-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
A
E
Q
F
G
----
I
S
R
M
T
V
R
Q
A
L
--
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
------------------
R
G
T
F
V
S
K
---------------------------
14
PsiBlast_PDB
32.83
36%
-111
- C3 -
-
4U0W
4
YVOA_BACSU
A:
[42-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
A
E
Q
F
G
----
I
S
R
M
T
V
R
Q
A
L
--
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
------------------
R
G
T
F
V
S
K
---------------------------
12
PsiBlast_PDB
31.46
36%
-109
- C3 -
-
2WV0
-
YVOA_BACSU
A:
[39-76]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
A
E
Q
F
G
----
I
S
R
M
T
V
R
Q
A
L
--
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
------------------
R
G
T
F
V
S
K
---------------------------
49
Fugue
30.64
15%
31
- C5 -
-
4L5C
3
?
A:
[24-312]
------------------------
K
V
K
V
G
I
I
G
G
S
G
F
D
D
P
N
LF
K
K
V
G
V
----
R
Q
V
T
T
P
-
F
G
K
P
S
D
T
-
L
V
E
G
F
V
G
D
V
A
C
V
V
L
P
R
H
G
K
-
G
H
L
I
P
P
S
E
V
N
Y
R
A
N
V
W
A
L
---
K
D
L
G
C
T
-
H
I
L
A
T
N
A
C
G
S
L
Q
E
D
L
V
P
G
D
F
V
V
-
L
N
Q
-
F
M
D
K
T
WGREN
T
F
Y
G
S
K
P
D
S
L
K
G
V
L
H
M
-
P
M
A
E
-
P
F
C
E
R
T
R
Q
I
L
I
Q
A
A
R
N
K
S
I
N
V
Y
D
K
K
--
T
M
D
K
S
A
C
----
I
H
P
C
V
H
A
E
G
S
A
V
-
T
I
---------------------
N
G
P
R
F
S
T
R
C
E
S
F
I
H
K
A
M
---------------
G
-
L
D
I
V
N
M
T
L
V
P
--
E
V
S
L
A
R
E
A
G
L
S
---------
Y
------
A
S
I
A
I
V
T
D
-----
F
D
C
W
K
S
E
E
E
H
V
C
V
--------
D
M
V
L
E
--------
Q
F
R
K
S
V
V
----
H
V
R
E
I
L
L
E
A
V
--
A
L
I
G
A
E
D
W
T
K
T
I
E
A
------------------
N
K
A
L
V
M
S
S
R
QDL----------------------
32
HHSearch
30.53
20%
-9
- C2 -
-
2A19
-
IF2A_YEAST
A:
[12-156]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
P
E
I
D
D
--
I
V
M
V
N
V
Q
----
Q
I
A
E
M
---
G
A
Y
V
-
K
L
L
--
E
YD
N
I
E
G
M
I
L
L
S
---S
I
Q
K
L
I
R
V
G
K
N
D
V
A
V
V
L
R
V
D
K--------------
E
-
K
G
Y
I
D
L
S
K
R
R
--
V
S
S
E
D
I
----
I
K
C
E
E
K
Y
Q
K
S
K
------
T
V
H
S
I
L
R
Y
-----
C
A
E
K
F
Q
I
P
L
E
E
L
Y
--------
K
T
I
A
W
--------
P
L
S
R
K
F
G
----
H
A
Y
E
A
F
K
L
S
I
ID
E
T
V
W
E
G
------------------------------------------------------------
31
HHSearch
29.77
21%
-20
- C2 -
-
1KL9
-
IF2A_HUMAN
A:
[12-165]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
P
E
V
E
D
--
V
V
M
V
N
V
R
----
S
I
A
E
M
---
G
A
Y
V
-
S
L
L
EY
N
--
N
I
E
G
M
I
L
L
S
E
L
-------
R
I
G
R
N
E
C
V
V
V
I
R
V
D
K--------------
E
-
K
G
Y
I
D
L
S
K
R
R
--
V
S
P
E
E
A
----
I
---------
K
C
E
D
K
F
T
K
S
K
T
V
Y
S
I
-----
L
R
H
-
V
A
E
V
L
E
Y
T
K
--------
D
E
Q
L
E
S
L
F
Q
R
T
A
W
V
F
D
D
K
Y
K
RP
G
Y
G
A
Y
D
A
F
K
H
A
V
SD
P
S
I
L
D
S
L
-----------------------------------------------------------