@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKN8: (2017-10-27 )
MYFMSFKDELAAQVAQRRTFAIISHPDAGKTTMTEKLLLWGKAIQVAGMVKSRKSDRAATSDWMEMEKERGISITTSVMQFPYKGHTINLLDTPGHEDFSEDTYRTLTAVDSALMVIDGAKGVEERTIKLMEVCRMRDTPIISFVNKMDREIREPLELLDEIENVLNIRCVPITWPLGMGRDFAGVYNILEDKLYVYKAGFGSTITDIEVRDGYDHADIREKVGELAWASFEESLELVQMANEPLDRGLFLQGKQTPVLFGTALGNFGVDHVLDAFMHWAPEPKAHPTQERVVEAKEEGFSGFVFKIQANMDPKHRDRIAFMRICSGKYEKGLKMNHVRISKEVRISDALTFLAGEREHLEEAWPGDIIGLHNHGTIQIGDTFTSGENLHFTGIPHFAPEMFRRVRLKDPLKSKQLQKGLKELSEEGATQVFMPQISNDLIVGAVGVLQFDVVAYRLKEEYKVDCVYEPVSVNTVRWIHCDDEKILNEFKKKAHDQLSIDGGGHLTYLAPSRVNLQIMQERWPDIEFRSTREH

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_C_3(2H5E)
RF3_ECOLI
[Raw transfer]



GDP_D_4(2H5E)
RF3_ECOLI
[Raw transfer]



GDP_C_3(2H5E)
RF3_ECOLI
[Raw transfer]



GDP_A_3(4MYT)
EFG_THETH
[Raw transfer]



GDP_A_2(2BM1)
EFG_THETH
[Raw transfer]



GDP_A_3(4M1K)
?
[Raw transfer]



GCP_A_2(2J7K)
EFG_THETH
[Raw transfer]



GDP_A_3(4MYU)
EFG_THETH
[Raw transfer]



GDP_A_3(1FNM)
EFG_THETH
[Raw transfer]



GDP_A_2(2BM0)
?
[Raw transfer]



GDP_B_2(1DAR)
?
[Raw transfer]
73 HHSearch 94.0164% -89 - C2 -3TR5 - RF3_COXBU -
3 PsiBlast_PDB 91.2363% -85 - C2 -3TR5 - RF3_COXBU -
1 PsiBlast_PDB 91.1065% -92 - C2 -2H5E 7.4 RF3_ECOLI
63 Fugue 91.0264% -91 - C2 -2H5E 7.4 RF3_ECOLI
21 PsiBlast_CBE 88.1865% -92 - C2 -2H5E 7.7 RF3_ECOLI
5 PsiBlast_PDB 87.0958% -73 - C2 -3VR1 - RF3_DESVM -
75 HHSearch 86.9357% -73 - C2 -3VQT - RF3_DESVM -
74 HHSearch 86.6157% -68 - C2 -3VR1 - RF3_DESVM -
23 PsiBlast_CBE 85.9358% -72 - C2 -3VR1 - RF3_DESVM -
22 PsiBlast_CBE 85.8358% -71 - C2 -3VR1 - RF3_DESVM -
4 PsiBlast_PDB 85.6058% -78 - C2 -3VQT - RF3_DESVM -
24 PsiBlast_CBE 85.4858% -73 - C2 -3VR1 - RF3_DESVM -
25 PsiBlast_CBE 84.9758% -76 - C2 -3VQT - RF3_DESVM -
26 PsiBlast_CBE 83.7258% -73 - C2 -3VQT - RF3_DESVM -
2 PsiBlast_PDB 78.5065% - - C3 -2O0F - RF3_ECOLI -
17 PsiBlast_PDB 57.2529% -19 - C2 -2XEX - EFG_STAAU -
7 PsiBlast_PDB 57.1531% -23 - C2 -4M1K 6.0 ?
15 PsiBlast_PDB 56.9831% -22 - C2 -2J7K 7.0 EFG_THETH
12 PsiBlast_PDB 56.8331% -24 - C2 -4MYT 5.3 EFG_THETH
66 Fugue 56.6628% -9 - C2 -4M1K - ? -
13 PsiBlast_PDB 56.5531% -16 - C2 -1FNM 7.0 EFG_THETH
10 PsiBlast_PDB 56.5131% -23 - C2 -2BM1 6.3 EFG_THETH
16 PsiBlast_PDB 56.3131% -18 - C2 -2BM0 6.0 ?
9 PsiBlast_PDB 55.5931% -20 - C2 -4MYU 5.2 EFG_THETH
67 Fugue 46.5731% -70 - C2 -1DAR Error ?