@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VP07: (2017-11-19 )
MDTDPLVSCENLTSIVNLEHLMTTPVSFHPQAFIELALSRGVLKFGEFTLKSGRVSPYFFNAGLLNDGEALSLLAQGYADKLTQCENVDVIFGPAYKGIPFVAATAVALSQTHNKSVPWGFNRKEAKDHGEGGVLVGAAVEGKKVWIIDDVITAGTAIREVVTILKNAGATIAGVLVALDRQERGQGELSAIQEVQKELEIPVHALITMKDLMDYLEAKGEKEALANMQAYREKYGI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PRP_B_6(1LH0)
PYRE_SALTY
[Raw transfer]




PRP_A_4(1OPR)
PYRE_SALTY
[Raw transfer]




PRP_A_4(1OPR)
PYRE_SALTY
[Raw transfer]




PRP_B_6(1LH0)
PYRE_SALTY
[Raw transfer]




PPC_A_3(4WML)
PYRE_YEAST
[Raw transfer]




3R3_A_3(4WN3)
PYRE_YEAST
[Raw transfer]




PPC_A_3(4WML)
PYRE_YEAST
[Raw transfer]




PRP_A_7(2PS1)
PYRE_YEAST
[Raw transfer]




PRP_A_7(2PS1)
PYRE_YEAST
[Raw transfer]




PRP_B_8(2PS1)
PYRE_YEAST
[Raw transfer]




OMP_B_10(2PRZ)
PYRE_YEAST
[Raw transfer]




OMP_E_5(1STO)
PYRE_SALTY
[Raw transfer]




ORO_B_5(1LH0)
PYRE_SALTY
[Raw transfer]




ORO_B_6(2PS1)
PYRE_YEAST
[Raw transfer]




3 PsiBlast_PDB 82.1159% -43 - C2 -1ORO - PYRE_ECOLI -
21 PsiBlast_CBE 81.9459% -51 - C2 -1LH0 5.9 PYRE_SALTY
1 PsiBlast_PDB 81.1759% -51 - C2 -1LH0 - PYRE_SALTY -
4 PsiBlast_PDB 80.3458% -54 - C2 -1STO 5.4 PYRE_SALTY
73 Fugue 80.2958% -46 - C2 -1ORO - PYRE_ECOLI -
2 PsiBlast_PDB 79.3159% -47 - C2 -1OPR 4.0 PYRE_SALTY
53 HHSearch 78.9757% -56 - C2 -1LH0 5.9 PYRE_SALTY
5 PsiBlast_PDB 77.4255% -67 - C2 -3N2L - PYRE_VIBCH -
26 PsiBlast_CBE 77.0946% -38 - C2 -2PS1 4.9 PYRE_YEAST
56 HHSearch 77.0649% -32 * C2 *2PS1 5.2 PYRE_YEAST
57 HHSearch 77.0347% -54 - C2 -3MJD - ? -
52 HHSearch 77.0157% -57 - C2 -1OPR 4.0 PYRE_SALTY
54 HHSearch 76.7055% -66 - C2 -3N2L - PYRE_VIBCH -
8 PsiBlast_PDB 76.6646% -52 - C2 -4WML 5.0 PYRE_YEAST
58 HHSearch 76.2749% -49 - C2 -4WML 5.0 PYRE_YEAST
9 PsiBlast_PDB 76.1946% -30 - C2 -2PS1 5.2 PYRE_YEAST
6 PsiBlast_PDB 75.8848% -11 - C2 -3MJD - ? -
7 PsiBlast_PDB 75.2646% -46 - C2 -4WN3 4.3 PYRE_YEAST
27 PsiBlast_CBE 75.1546% -47 - C2 -2PRZ 7.2 PYRE_YEAST
25 PsiBlast_CBE 74.0248% -6 - C2 -3MJD - ? -