@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : STAT1_HUMAN: (2017-06-04 )
CIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKKELSAVTFPDIIRNYKVMAAEN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_C_3(1YVL)
STAT1_HUMAN
[Raw transfer]

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CHAIN_C_3(1YVL)
STAT1_HUMAN
[Raw transfer]

-

CHAIN_D_4(1YVL)
STAT1_HUMAN
[Raw transfer]

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1 PsiBlast_PDB 86.72100%-136 - C2 -1YVL 6.5 STAT1_HUMAN
2 PsiBlast_PDB 86.49100%-114 - C2 -1BF5 Calc... STAT1_HUMAN
33 HHSearch 86.33100%-136 - C2 -1YVL 6.5 STAT1_HUMAN
32 HHSearch 85.95100%-114 - C2 -1BF5 - STAT1_HUMAN -
21 PsiBlast_CBE 85.47100%-128 - C2 -1YVL 7.0 STAT1_HUMAN
5 PsiBlast_PDB 74.2360%-105 - C2 -4E68 Calc... STAT3_MOUSE
31 HHSearch 72.1860%-104 - C2 -1BG1 Calc... STAT3_MOUSE
6 PsiBlast_PDB 70.8943%-144 - C2 -5D39 - STAT6_HUMAN -
4 PsiBlast_PDB 70.7060% -96 - C2 -1BG1 - STAT3_MOUSE -
35 HHSearch 69.1142%-133 - C2 -4Y5U Calc... STAT6_HUMAN
7 PsiBlast_PDB 68.0543%-120 - C2 -4Y5U - STAT6_HUMAN -
8 PsiBlast_PDB 67.3943%-143 - C2 -4Y5W - STAT6_HUMAN -
3 PsiBlast_PDB 62.2260%-123 - C2 -3CWG Calc... STAT3_MOUSE
34 HHSearch 61.7132%-150 - C2 -1Y1U Calc... STA5A_MOUSE
9 PsiBlast_PDB 53.1332% -98 - C2 -1Y1U - STA5A_MOUSE -
46 HHSearch 51.1522% -64 - C2 -4EIH Calc...
41 HHSearch 49.9724% -51 * C2 *1JU5 Calc... CRK_HUMAN
36 HHSearch 49.7321%-131 - C2 -1UUR Calc... STATA_DICDI
44 HHSearch 49.3716%-100 - C2 -2Y3A Calc...
40 HHSearch 48.1724% -41 - C2 -2EYZ Calc... CRK_HUMAN