@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0139: (2017-12-16 )
MNIAVIGLGHVGLAYALLFASKYKVVAYDIDSVKINNLKKGILPSKNEELMKFFCENNLNITFFDTFSEIKNNIDYYIIALPTDYDEKIGSFNTYEIEQTVSKILRVKPNGKIILKSTVPIGFSNKLKRLFDTKNIIFVPEFLREGCSIYDNLYPSRIVVGDETVEGRKIAELFLSISTHSTANIKNVMLVSPTEAEAIKLFSNTFLALRVAFFNELDSFAERRSLNAEVVIKGVCLDPRIGNFYNNPSFGFGGYCLPKDTKQLKKEFIEINAPVIEAIDISNTNRKQFIVKQILERKPKIVGIYKLGMKYNSDNYKESAILSIINELLIVGIKILVYEPNLNVSIDNVIFEKNFELFTKQSDLIVANRWDRGLEAYKDKVYTRGIWIRD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_A_5(1DLJ)
UDG_STRPY
[Raw transfer]




NAD_A_5(1DLI)
UDG_STRPY
[Raw transfer]




GOL_A_9(1DLJ)
UDG_STRPY
[Raw transfer]




UPG_A_2(3VTF)
?
[Raw transfer]




UDX_A_6(1DLI)
UDG_STRPY
[Raw transfer]




UGA_A_6(1DLJ)
UDG_STRPY
[Raw transfer]




UGA_A_6(1DLJ)
UDG_STRPY
[Raw transfer]




UGA_A_6(1DLJ)
UDG_STRPY
[Raw transfer]




GOL_A_8(1DLI)
UDG_STRPY
[Raw transfer]




UGA_A_3(3PJG)
?
[Raw transfer]




46 HHSearch 78.1144% -87 - C2 -3PJG 7.2 ?
1 PsiBlast_PDB 75.7644% -49 - C2 -3PJG - ? -
48 HHSearch 74.3644% -48 - C2 -1DLJ 5.2 UDG_STRPY
37 Fugue 72.5543% -40 * C2 *1DLJ 5.2 UDG_STRPY
2 PsiBlast_PDB 70.2444% -18 - C2 -1DLI 9.2 UDG_STRPY
3 PsiBlast_PDB 70.2244% -13 - C2 -1DLJ 9.4 UDG_STRPY
57 HHSearch 65.4827% 0 - C- -3GG2 - ? -
56 HHSearch 64.7527% 0 - C- -3GG2 - ? -
49 HHSearch 58.3327% 1 - C2 -2Y0C - ? -
59 HHSearch 58.1429% -2 - C2 -4A7P - ? -
7 PsiBlast_PDB 57.7428% -0 - C2 -4A7P - ? -
58 HHSearch 57.4827% -26 - C2 -3VTF - ? -
8 PsiBlast_PDB 56.2228% -4 - C2 -3VTF 6.7 ?
39 Fugue 55.2622% -3 - C2 -2O3J - UGDH_CAEEL -
4 PsiBlast_PDB 54.8929% -3 - C2 -2Y0E - ? -
52 HHSearch 54.2022% -3 - C2 -3KHU - UGDH_HUMAN -
38 Fugue 54.1024% 17 - C2 -2Q3E - UGDH_HUMAN -
9 PsiBlast_PDB 54.0729% -21 - C2 -3GG2 - ? -
54 HHSearch 53.8021% -4 - C2 -2O3J - UGDH_CAEEL -
5 PsiBlast_PDB 53.8029% -2 - C2 -2Y0C - ? -