@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1276: (2018-01-08 )
MSLQETIIQELGVKPVIDAQEEIRRSIDFLKRYLKKHPFLKTFVLGISGGQDSTLAGRLAQLAMEELRAETGDDSYKFIAVRLPYGVQADEADAQKALAFIQPDVSLVVNIKESADAMTAAVEATGSPVSDFNKGNIKARCRMIAQYALAGSHSGAVIGTDHAAENITGFFTKFGDGGADILPLYRLNKRQGKQLLQKLGAEPALYEKIPTADLEEDKPGLADEVALGVTYAEIDDYLEGKTISPEAQATIENWWHKGQHKRHLPITVFDDFWE

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADJ_A_18(1KQP)
NADE_BACSU
[Raw transfer]




ADJ_B_19(1KQP)
NADE_BACSU
[Raw transfer]




ADJ_B_19(1KQP)
NADE_BACSU
[Raw transfer]




APC_A_6(1IH8)
NADE_BACSU
[Raw transfer]




APC_A_5(2PZ8)
NADE_BACAN
[Raw transfer]




APC_B_6(2PZ8)
NADE_BACAN
[Raw transfer]




ATP_A_6(1EE1)
NADE_BACSU
[Raw transfer]




AMP_A_5(1WXI)
NADE_ECOLI
[Raw transfer]




AMP_A_8(2PZA)
NADE_BACAN
[Raw transfer]




AMP_A_4(1FYD)
NADE_BACSU
[Raw transfer]




AMP_A_5(1WXI)
NADE_ECOLI
[Raw transfer]




AMP_B_7(2PZA)
NADE_BACAN
[Raw transfer]




AMP_C_17(3FIU)
?
[Raw transfer]




NAD_A_8(2NSY)
NADE_BACSU
[Raw transfer]




DND_C_3(1IFX)
NADE_BACSU
[Raw transfer]




NAD_A_8(2NSY)
NADE_BACSU
[Raw transfer]




AMP_A_7(3FIU)
?
[Raw transfer]




AMP_B_12(3FIU)
?
[Raw transfer]




NAD_B_10(2NSY)
NADE_BACSU
[Raw transfer]




DND_A_4(1EE1)
NADE_BACSU
[Raw transfer]




DND_B_5(1EE1)
NADE_BACSU
[Raw transfer]




AMP_B_12(3FIU)
?
[Raw transfer]




ATP_A_6(1NSY)
NADE_BACSU
[Raw transfer]




ATP_A_6(1NSY)
NADE_BACSU
[Raw transfer]




ATP_B_5(1NSY)
NADE_BACSU
[Raw transfer]




NAD_A_2(5F23)
NADE_PSEAE
[Raw transfer]




NAD_B_2(1WXH)
NADE_ECOLI
[Raw transfer]




NAD_A_2(5F23)
NADE_PSEAE
[Raw transfer]




DND_D_4(1IFX)
NADE_BACSU
[Raw transfer]




MES_A_3(5F23)
NADE_PSEAE
[Raw transfer]




2 PsiBlast_PDB 92.3476% -79 - C6 -5HUJ - ? -
1 PsiBlast_PDB 92.1976% -75 - C6 -5HUH - ? -
7 PsiBlast_PDB 89.7966% -78 - C6 -1WXI 4.5 NADE_ECOLI
6 PsiBlast_PDB 89.7466% -87 - C6 -1WXH 6.7 NADE_ECOLI
8 PsiBlast_PDB 89.4566% -70 - C6 -3HMQ - NADE_SALTY -
3 PsiBlast_PDB 89.3866% -87 - C6 -1WXE - NADE_ECOLI -
4 PsiBlast_PDB 88.5366% -85 - C6 -1WXF - NADE_ECOLI -
5 PsiBlast_PDB 88.0366% -84 - C6 -1WXG - NADE_ECOLI -
59 HHSearch 85.4376% -23 - C6 -5HUJ - ? -
60 HHSearch 84.6476% -21 - C6 -5HUH - ? -
18 PsiBlast_PDB 81.8560% -25 - C6 -4Q16 - NADE_DEIRA -
17 PsiBlast_PDB 79.9656% -5 - C6 -1KQP 6.6 NADE_BACSU
12 PsiBlast_PDB 79.5256% -5 - C6 -2NSY 7.2 NADE_BACSU
43 Fugue 79.4457% -3 - C6 -2NSY 7.2 NADE_BACSU
25 PsiBlast_CBE 79.4158% -18 - C6 -2PZ8 7.1 NADE_BACAN
28 PsiBlast_CBE 79.2856% -4 - C6 -1KQP 7.2 NADE_BACSU
16 PsiBlast_PDB 79.1656% -7 - C6 -1IH8 6.5 NADE_BACSU
9 PsiBlast_PDB 79.0658% -15 - C6 -2PZ8 7.2 NADE_BACAN
24 PsiBlast_CBE 78.9158% -19 - C6 -2PZA 4.1 NADE_BACAN
62 HHSearch 78.8160% -7 * C6 *4Q16 - NADE_DEIRA -
54 HHSearch 78.7763% -15 - C6 -1WXI 4.5 NADE_ECOLI
26 PsiBlast_CBE 78.4256% -4 - C6 -2NSY 6.2 NADE_BACSU
58 HHSearch 78.4057% -4 - C6 -1KQP 7.2 NADE_BACSU
13 PsiBlast_PDB 78.2656% -8 - C6 -1EE1 7.1 NADE_BACSU
14 PsiBlast_PDB 78.0556% -8 - C6 -1FYD 4.3 NADE_BACSU
10 PsiBlast_PDB 78.0058% -15 - C6 -2PZA 4.4 NADE_BACAN
11 PsiBlast_PDB 77.8256% -8 - C6 -1NSY 3.9 NADE_BACSU
27 PsiBlast_CBE 77.6956% -5 - C6 -1NSY 3.7 NADE_BACSU
57 HHSearch 77.4557% -7 - C6 -1NSY 3.9 NADE_BACSU
31 PsiBlast_CBE 77.2856% -32 - C6 -1EE1 5.8 NADE_BACSU
30 PsiBlast_CBE 77.1756% -35 - C6 -1IFX 6.3 NADE_BACSU
15 PsiBlast_PDB 75.9556% -28 - C6 -1IFX 6.1 NADE_BACSU
20 PsiBlast_PDB 72.9854% -8 - C6 -5F23 6.5 NADE_PSEAE
65 HHSearch 70.4554% -1 - C6 -5F23 6.6 NADE_PSEAE
37 PsiBlast_CBE 68.1336% -31 - C6 -3FIU 4.7 ?
39 PsiBlast_CBE 67.7336% -32 - C6 -3FIU 4.2 ?
38 PsiBlast_CBE 66.9736% -30 - C6 -3FIU 4.4 ?
67 HHSearch 63.5736% -18 - C6 -3FIU 4.5 ?