@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKL8: (2017-10-27 )
MNFDRNTPIAFLGIGLMGNRMASHLIQAGFQVAVWNRTASACEELIDIGAHALDLSNIGQYPLILTCLADDKAVQAVFDQIQTNLKAGQVIVDFSSLSVAATKALAQAAALQDVIWIDSPVSGGTAGAEQGTLVIFAGGDAQTIEALSPVYNVLSQRVTRMGDTGTGQATKICNQLIVAANSALIAEAVALADRAGVDTTLLAPALAGGFADSKPFQILAPRMATHTFEPVQWKVQTLSKDLNNAVTLANNVNLDIPVAQKALLQLQTHQKNSFAEKDLATMIQVVEQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_I_9(1WP4)
?
[Raw transfer]




NDP_A_6(2CVZ)
?
[Raw transfer]




TLA_A_3(1VPD)
?
[Raw transfer]




7VD_A_6(5U5G)
?
[Raw transfer]




60 HHSearch 73.4231% -54 - C1 -4DLL - ? -
59 HHSearch 72.9831% -46 - C1 -4DLL - ? -
58 HHSearch 71.0524% -62 - C1 -3G0O - ? -
53 HHSearch 71.0426% -21 * C1 *3PEF - ? -
20 PsiBlast_PDB 70.4925% -52 - C1 -3Q3C - SERDH_PSEAE -
64 HHSearch 70.4627% -43 - C1 -3OBB - SERDH_PSEAE -
6 PsiBlast_PDB 70.1129% -12 - C1 -1VPD 3.3 ?
70 HHSearch 70.0027% -14 - C1 -2CVZ - ? -
54 HHSearch 69.9727% -28 - C1 -3PDU - ? -
68 HHSearch 69.6424% -48 - C1 -4GBJ - ? -
62 HHSearch 69.3726% -21 - C1 -2GF2 - 3HIDH_HUMAN -
15 PsiBlast_PDB 69.3227% -0 - C1 -5JE8 - ? -
71 HHSearch 69.0329% -32 - C- -3CKY - HMGD_EUBBA -
55 HHSearch 68.9526% -12 - C1 -3DOJ - GLYR1_ARATH -
10 PsiBlast_PDB 68.8226% -27 - C1 -3PDU - ? -
69 HHSearch 68.6424% -43 - C1 -4GBJ - ? -
57 HHSearch 68.6325% -28 - C1 -2UYY - GLYR1_HUMAN -
7 PsiBlast_PDB 68.6125% -16 - C1 -3PEF - ? -
11 PsiBlast_PDB 68.3727% -24 - C1 -2CVZ 8.4 ?
9 PsiBlast_PDB 68.2728% -21 - C1 -1WP4 11.4 ?