@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKS8: (2017-10-29 )
MIGALMLDIAGTELTQEDIELLQAPQVGGMILFARNIESPQQVRALTDHMRQVRPDILIAVDQEGGRVQRLKSGFTLLPAMGRFGELYITQPQKALELAEQCGWLMATEVLAVGIDFSFAPVLDLNAISDVIGDRGFSKNIEDIAPLAGAFMRGMKKAGMANTGKHFPGHGSVKADSHVAAAIDSRSYDEIYNHDMQSFIKLMPELDALMPAHVIYDQVDLNPAGFSPFWIQEVLRNRLKFNGVLFSDDLSMQAACVAGGADARIQAALAAGCDMGLVCNDRSAACTALDGITNLELPNQERLERMRGRIPQIQVGETLSLGNDWQAVKTAIEEFKNSF

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDG_B_5(4GVF)
NAGZ_SALTY
[Raw transfer]




NDG_A_3(4GVF)
NAGZ_SALTY
[Raw transfer]




NAG_A_3(4GNV)
?
[Raw transfer]




NAG_B_2(1Y65)
NAGZ_VIBCH
[Raw transfer]




NDG_A_3(4GVF)
NAGZ_SALTY
[Raw transfer]




NAG_B_7(4GNV)
?
[Raw transfer]




NAG_B_7(4GNV)
?
[Raw transfer]




1BW_A_3(4HZM)
NAGZ_SALTY
[Raw transfer]




1BW_B_4(4HZM)
NAGZ_SALTY
[Raw transfer]




NAG_B_7(4GVI)
NAGZ_SALTY
[Raw transfer]




OAN_A_2(2OXN)
NAGZ_VIBCH
[Raw transfer]




NOK_A_4(5LY7)
NAGZ_PSEAE
[Raw transfer]




OAN_A_2(2OXN)
NAGZ_VIBCH
[Raw transfer]




0XY_A_3(4GVH)
NAGZ_SALTY
[Raw transfer]




NOK_A_3(5G5K)
NAGZ_PSEAE
[Raw transfer]




BA4_A_2(3GS6)
NAGZ_VIBCH
[Raw transfer]




0XY_B_5(4GVH)
NAGZ_SALTY
[Raw transfer]




NOK_B_6(5LY7)
NAGZ_PSEAE
[Raw transfer]




NAG_A_3(5G2M)
NAGZ_PSEAE
[Raw transfer]




NOK_B_4(5G5K)
NAGZ_PSEAE
[Raw transfer]




0XY_A_3(4GVH)
NAGZ_SALTY
[Raw transfer]




VPU_A_2(3GSM)
NAGZ_VIBCH
[Raw transfer]




NAG_B_4(5G2M)
NAGZ_PSEAE
[Raw transfer]




FMT_A_7(4YYF)
?
[Raw transfer]




GOL_A_4(3GSM)
NAGZ_VIBCH
[Raw transfer]




89A_B_8(5G3R)
NAGZ_PSEAE
[Raw transfer]




89A_A_4(5G3R)
NAGZ_PSEAE
[Raw transfer]




89A_A_4(5G3R)
NAGZ_PSEAE
[Raw transfer]




ACY_A_3(3SQL)
?
[Raw transfer]




MES_A_3(4GVG)
NAGZ_SALTY
[Raw transfer]




ACY_A_9(3SQL)
?
[Raw transfer]




22 PsiBlast_CBE 88.4161% -51 - C4 -5G3R 2.8 NAGZ_PSEAE
4 PsiBlast_PDB 87.5161% -57 - C4 -5G5K 3.7 NAGZ_PSEAE
3 PsiBlast_PDB 87.3161% -50 - C4 -5G3R 3.2 NAGZ_PSEAE
25 PsiBlast_CBE 87.1860% -50 - C4 -5LY7 3.6 NAGZ_PSEAE
7 PsiBlast_PDB 86.7560% -50 - C4 -5LY7 3.8 NAGZ_PSEAE
24 PsiBlast_CBE 86.6961% -53 - C4 -5G1M - NAGZ_PSEAE -
21 PsiBlast_CBE 86.6961% -53 - C4 -5G5K 3.2 NAGZ_PSEAE
57 HHSearch 86.3360% -54 * C4 *5G3R 3.2 NAGZ_PSEAE
23 PsiBlast_CBE 85.7561% -58 - C4 -5G2M 3.4 NAGZ_PSEAE
1 PsiBlast_PDB 85.4661% -49 - C4 -5G1M - NAGZ_PSEAE -
2 PsiBlast_PDB 84.3861% -52 - C4 -5G2M 2.9 NAGZ_PSEAE
5 PsiBlast_PDB 84.2760% -50 - C4 -5G5U - NAGZ_PSEAE -
58 HHSearch 84.0960% -60 - C4 -5G1M - NAGZ_PSEAE -
6 PsiBlast_PDB 81.5560% -55 - C4 -5G6T - NAGZ_PSEAE -
52 HHSearch 79.1447% -27 - C4 -4GNV 4.1 ?
8 PsiBlast_PDB 78.5949% -31 - C4 -1Y65 3.4 NAGZ_VIBCH
31 PsiBlast_CBE 77.8550% -24 - C4 -5UTR - ? -
34 PsiBlast_CBE 77.6250% -25 - C4 -4MSS - ? -
35 PsiBlast_CBE 77.3450% -26 - C4 -4GNV 4.1 ?
16 PsiBlast_PDB 76.9750% -23 - C4 -4MSS - ? -
15 PsiBlast_PDB 76.6150% -27 - C4 -4GNV 4.1 ?
9 PsiBlast_PDB 76.4049% -31 - C4 -2OXN 3.9 NAGZ_VIBCH
28 PsiBlast_CBE 75.9548% -27 - C4 -4GVH 3.8 NAGZ_SALTY
11 PsiBlast_PDB 75.6148% -25 - C4 -4GVG 1.9 NAGZ_SALTY
27 PsiBlast_CBE 75.4848% -25 - C4 -4HZM 3.8 NAGZ_SALTY
12 PsiBlast_PDB 75.3448% -24 - C4 -4GVH 3.7 NAGZ_SALTY
30 PsiBlast_CBE 75.1148% -27 - C4 -4GVF 3.3 NAGZ_SALTY
37 PsiBlast_CBE 75.0648% -25 - C4 -4GVI 3.3 NAGZ_SALTY
10 PsiBlast_PDB 75.0648% -26 - C4 -4GVF 3.3 NAGZ_SALTY
13 PsiBlast_PDB 75.0448% -26 - C4 -4HZM 3.9 NAGZ_SALTY
50 HHSearch 73.9945% -20 - C4 -4GVF 3.3 NAGZ_SALTY
51 HHSearch 73.8445% -18 - C4 -4GVH 3.7 NAGZ_SALTY
20 PsiBlast_PDB 73.7148% -33 - C4 -3GS6 3.7 NAGZ_VIBCH
36 PsiBlast_CBE 73.5848% -31 - C4 -3GSM 3.3 NAGZ_VIBCH
56 HHSearch 72.8248% -27 - C4 -2OXN 3.9 NAGZ_VIBCH
59 HHSearch 62.0730% -15 - C4 -3SQL 3.5 ?