@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VP08: (2017-11-19 )
MRLNFRMIPKDQYPSDVKILRVVSINVNGLRSSVTKGLLEWLEQSDADVVCMQESRITHEQWTEKFRPEGWHTHLFPAERAGYAGTAIYSRLPFVSIKDGLGFELADSQGRFISAEFDLGLSHPVHIASLYLPSGSSGEEAQARKDLFLGEYAKILKQWRDENKSIIICGDYNIVHKRIDIKNWSGNQKSSGCLPHERAWLDHIYDELGYVDTFRVVRTEAELYSWWSNRGQARAKNVGWRIDYHACSPDWKARTVNAWVYKDQWFSDHAPVIIDYKIQE

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BCN_A_3(2JC5)
?
[Raw transfer]



BCN_A_3(2JC5)
?
[Raw transfer]



PEG_A_10(3W2Y)
?
[Raw transfer]



NACID_M_5(4B5M)
?
[Raw transfer]
-
NACID_U_4(4B5G)
?
[Raw transfer]
-
FMT_A_13(3W2Y)
?
[Raw transfer]



NACID_U_2(4B5J)
?
[Raw transfer]
-
NACID_U_2(4B5H)
?
[Raw transfer]
-
NACID_N_6(4B5M)
?
[Raw transfer]
-
NACID_N_6(4B5M)
?
[Raw transfer]
-
NACID_L_4(4B5M)
?
[Raw transfer]
-
GOL_A_10(3G0R)
?
[Raw transfer]



PEG_A_5(5CFE)
EXOA_BACSU
[Raw transfer]



PEG_A_5(5CFE)
EXOA_BACSU
[Raw transfer]



GOL_A_5(3G38)
?
[Raw transfer]



PG4_A_3(5J8N)
?
[Raw transfer]



FMT_A_5(3W2Y)
?
[Raw transfer]



PG4_A_3(5J8N)
?
[Raw transfer]



NACID_Z_9(4B5G)
?
[Raw transfer]
-
NACID_X_7(4B5G)
?
[Raw transfer]
-
NACID_I_4(3G3C)
?
[Raw transfer]
-
NACID_I_4(3G4T)
?
[Raw transfer]
-
NACID_V_3(4B5I)
?
[Raw transfer]
-
NACID_V_3(4B5F)
?
[Raw transfer]
-
4 PsiBlast_PDB 88.0844% -46 - C1 -4B5I 6.9 ?
2 PsiBlast_PDB 86.5344% -43 - C1 -4B5F 6.8 ?
9 PsiBlast_PDB 86.0938% -42 - C1 -4JG3 - ? -
23 PsiBlast_CBE 86.0844% -46 - C1 -4B5G 6.8 ?
24 PsiBlast_CBE 85.9244% -46 - C1 -4B5G 8.4 ?
44 HHSearch 85.7338% -40 - C1 -4JG3 - ? -
22 PsiBlast_CBE 85.5644% -43 - C1 -4B5M 6.0 ?
3 PsiBlast_PDB 85.3344% -42 - C1 -4B5G 7.7 ?
21 PsiBlast_CBE 85.1944% -43 - C1 -4B5M 6.0 ?
6 PsiBlast_PDB 85.1644% -44 - C1 -4B5M 7.4 ?
1 PsiBlast_PDB 84.7344% -40 - C1 -2JC5 3.1 ?
7 PsiBlast_PDB 84.5443% -44 - C1 -4B5H 7.4 ?
5 PsiBlast_PDB 84.1444% -38 - C1 -4B5J 8.2 ?
11 PsiBlast_PDB 83.6738% -36 - C1 -3W2X - ? -
40 PsiBlast_CBE 82.5737% -30 - C1 -3W2Y 3.4 ?
39 PsiBlast_CBE 82.1737% -28 - C1 -3W2Y 2.8 ?
55 HHSearch 81.8632%-110 - C1 -5EWT - ? -
47 HHSearch 79.1844% -2 - C1 -4B5M 6.0 ?
12 PsiBlast_PDB 79.0838% -35 - C1 -3G91 - ? -
20 PsiBlast_PDB 79.0238% -35 - C1 -3G00 - ? -
17 PsiBlast_PDB 78.7038% -33 - C1 -3G3C 3.7 ?
46 HHSearch 78.2944% -2 - C1 -2JC5 3.1 ?
25 PsiBlast_CBE 78.2038% -38 - C1 -3G4T 3.4 ?
33 PsiBlast_CBE 78.1838% -44 - C1 -3G38 2.6 ?
45 HHSearch 77.4134% -46 - C1 -5J8N 1.7 ?
37 PsiBlast_CBE 76.9938% -37 - C1 -3G0R 2.7 ?
41 PsiBlast_CBE 72.9034% -44 - C1 -5J8N 1.7 ?
42 PsiBlast_CBE 70.1036% -4 - C1 -5CFE 2.1 EXOA_BACSU
56 HHSearch 68.6636% 0 - C1 -5CFE 2.1 EXOA_BACSU