@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XXA5: (2018-01-03 )
MFKGKTILVTGGTGSIGSEIVRQLLKYEPKAIRIYSRGEEKQFYMQQELSNHTNLRFLIGDIRDSQRIDYACRDVDIIFHAAAMKHVPASEYNPMEAVKTNVMGTQNVIDAAIKNNVKHFVGISTDKVVSPTNTMGATKLLSEKLIIAANQYKGKTETIFSCVRFGNVMGSSGSVIPLFSKQIKNNKDITLTDVDMTRFMMSIPDAARLVLSAAMNSKFGETYVLKMPAINILTLAQSLIKIYNDTHDEKYRGEIKVVGIRPGEKLYEELMTTDEIERSYENDKMYIIPPHYHATDELYKDYEKIKITAYSSDATELMSGQEFIRIAKENNVVTW

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(2GN4)
PSEB_HELPY
[Raw transfer]



NDP_B_5(2GN4)
PSEB_HELPY
[Raw transfer]



NDP_A_3(2GN4)
PSEB_HELPY
[Raw transfer]



NAP_B_13(2GN8)
PSEB_HELPY
[Raw transfer]



NDP_A_3(2GN4)
PSEB_HELPY
[Raw transfer]



NAP_B_16(2GNA)
PSEB_HELPY
[Raw transfer]



NAP_B_13(2GN6)
PSEB_HELPY
[Raw transfer]



NAP_A_7(2GN8)
PSEB_HELPY
[Raw transfer]



NAP_A_7(2GN6)
PSEB_HELPY
[Raw transfer]



NAP_A_2(4G5H)
?
[Raw transfer]



NAP_A_13(2GNA)
PSEB_HELPY
[Raw transfer]



NAP_A_2(4G5H)
?
[Raw transfer]



NAP_B_13(2GN9)
PSEB_HELPY
[Raw transfer]



NAP_A_7(2GN9)
PSEB_HELPY
[Raw transfer]



GDU_A_7(2GNA)
PSEB_HELPY
[Raw transfer]



UDZ_B_20(3W1V)
?
[Raw transfer]



UDZ_A_11(3W1V)
?
[Raw transfer]



GDU_B_10(2GNA)
PSEB_HELPY
[Raw transfer]
40 HHSearch 96.7039% -69 - C1 -3W1V 7.0 ?
39 HHSearch 96.6039% -73 - C1 -4G5H 9.5 ?
26 PsiBlast_CBE 93.9640% -77 - C1 -3W1V 6.5 ?
7 PsiBlast_PDB 92.0640% -81 - C1 -4G5H 9.5 ?
6 PsiBlast_PDB 91.8440% -79 - C1 -3W1V - ? -
41 HHSearch 87.7642% -13 - C1 -2GN4 12.5 PSEB_HELPY
23 PsiBlast_CBE 86.2144% -30 - C1 -2GN8 11.7 PSEB_HELPY
1 PsiBlast_PDB 84.9844% -28 - C1 -2GN4 12.4 PSEB_HELPY
25 PsiBlast_CBE 84.8144% -29 - C1 -2GN4 11.8 PSEB_HELPY
27 Fugue 84.0242% 13 - C1 -2GN4 12.5 PSEB_HELPY
21 PsiBlast_CBE 83.8144% -32 - C1 -2GNA 11.7 PSEB_HELPY
3 PsiBlast_PDB 83.5744% -29 - C1 -2GN8 11.8 PSEB_HELPY
24 PsiBlast_CBE 82.7744% -33 - C1 -2GN6 11.9 PSEB_HELPY
5 PsiBlast_PDB 81.9044% -32 - C1 -2GNA 11.3 PSEB_HELPY
4 PsiBlast_PDB 81.3844% -32 - C1 -2GN9 11.4 PSEB_HELPY
2 PsiBlast_PDB 81.2844% -30 - C1 -2GN6 11.1 PSEB_HELPY
22 PsiBlast_CBE 80.6044% -29 - C1 -2GN9 11.2 PSEB_HELPY
37 HHSearch 71.5833% -28 - C1 -4TQG - ? -
28 Fugue 69.2433% 2 - C1 -4TQG - ? -
8 PsiBlast_PDB 62.6732% -35 - C1 -4TQG - ? -