@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XXU0: (2018-01-06 )
MYDVIVIGAGPSGMTAALYASRSNLSVLMIEQGAPGGQMNNTAEIENYPGFDSIMGPDLAYKMYESVSRFGTENAYGIVQDIKDHGSHKEVICEDKSYEGKTVIIATGCIHRKLGVPGEEEFAGRGVSYCAVCDGAFFRNKRLVVIGGGDSAVEEAIYLTQFASEVVIVHRRDELRAQKIIQDRAFANEKISFMWDTVVDEIVGNEMVVTGVKARNVKTGNEFDLAADGVFIYVGLDPLTAPFREAGLTNEAGWIPTDNEMKTNMPGVFAIGDVREKDLRQITTAVGDGGIAGQQVYKYLESLEETTA

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_C_9(3F8R)
?
[Raw transfer]



NAP_B_7(3F8R)
?
[Raw transfer]



NAP_D_11(3F8R)
?
[Raw transfer]



NAP_A_5(3F8R)
?
[Raw transfer]



CIT_B_8(3ITJ)
TRXB1_YEAST
[Raw transfer]



ACY_B_9(3F8P)
?
[Raw transfer]



ACY_B_8(3F8D)
?
[Raw transfer]



GOL_A_19(4YKG)
AHPF_ECOLI
[Raw transfer]



CIT_D_14(3ITJ)
TRXB1_YEAST
[Raw transfer]



FAD_A_2(5MIT)
?
[Raw transfer]



FAD_A_2(5MIQ)
?
[Raw transfer]



FAD_A_2(5MIS)
?
[Raw transfer]



FAD_A_2(5MH4)
?
[Raw transfer]



FAD_A_2(5MIT)
?
[Raw transfer]



FAD_A_2(5MIR)
?
[Raw transfer]



FAD_A_2(5MIP)
?
[Raw transfer]



FAD_B_8(4GCM)
TRXB_STAAW
[Raw transfer]



FAD_A_2(5UWY)
?
[Raw transfer]



FAD_D_11(5MJK)
?
[Raw transfer]



FAD_B_7(5MJK)
?
[Raw transfer]



FAD_C_9(5MJK)
?
[Raw transfer]



FAD_A_5(5MJK)
?
[Raw transfer]



FAD_A_3(4GCM)
TRXB_STAAW
[Raw transfer]



FAD_A_2(5UWY)
?
[Raw transfer]
1 PsiBlast_PDB 94.5265%-131 - C2 -5UWY 10.2 ?
21 PsiBlast_CBE 92.7460%-116 - C2 -5MJK 12.7 ?
4 PsiBlast_PDB 92.4060%-112 - C2 -5MIQ 12.7 ?
3 PsiBlast_PDB 92.2960%-111 - C2 -5MIP 12.2 ?
8 PsiBlast_PDB 92.0360%-118 - C2 -5MJK 13.2 ?
22 PsiBlast_CBE 91.8760%-119 - C2 -5MJK 12.3 ?
6 PsiBlast_PDB 91.7860%-111 - C2 -5MIS 12.6 ?
5 PsiBlast_PDB 91.6860%-111 - C2 -5MIR 12.5 ?
23 PsiBlast_CBE 91.0360%-117 - C2 -5MJK 12.5 ?
2 PsiBlast_PDB 90.6560%-111 - C2 -5MH4 12.9 ?
7 PsiBlast_PDB 90.4160%-111 - C2 -5MIT 12.4 ?
9 PsiBlast_PDB 88.5155%-114 - C2 -4GCM 13.4 TRXB_STAAW
92 HHSearch 85.9960% -81 - C2 -5MIT 12.4 ?
93 HHSearch 83.5967% -50 - C2 -5UWY 10.2 ?
101 HHSearch 79.4356% -31 - C2 -4GCM 13.4 TRXB_STAAW
44 PsiBlast_CBE 75.5138% -63 - C2 -3F8R 8.2 ?
48 PsiBlast_CBE 75.0538% -63 - C2 -3F8P 3.7 ?
46 PsiBlast_CBE 74.7838% -61 - C2 -3F8P - ? -
58 PsiBlast_CBE 74.1338% -59 - C2 -3F8D - ? -
55 PsiBlast_CBE 74.0538% -61 - C2 -3F8D - ? -
45 PsiBlast_CBE 72.4438% -59 - C2 -3F8R 8.7 ?
43 PsiBlast_CBE 71.6338% -60 - C2 -3F8R 7.0 ?
42 PsiBlast_CBE 70.5838% -61 - C2 -3F8R 8.1 ?
52 PsiBlast_CBE 51.3140% 34 - C2 -3ITJ 2.1 TRXB1_YEAST