@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XYF2: (2018-01-08 )
MNQLDQRPIIALDFSTRQEVEDFLRFFPKEEKLFVKIGMELFYQEGPEIVRYLKEAGHNVFLDLKLHDIPNTVEKAMRGLAKLGVDLTCVHAAGGIRMMEAAMRGLEEGTPEGGKRPLLLAITQLTSTSEEEMHADQLIEVSLEKSVIHYASCAKKAGLDGVVSSAWEVEAIKEMAGDEFVCLTPGIRPEGTVAGDQTRVVTPSQAKKIGSTFIVIGRPITQSTNPYKAYQTIQTEWS

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BMQ_E_5(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_H_8(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_G_7(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_G_7(1EIX)
PYRF_ECOLI
[Raw transfer]




U5P_H_8(1DBT)
PYRF_BACSU
[Raw transfer]




BMQ_F_6(1EIX)
PYRF_ECOLI
[Raw transfer]




U5P_G_7(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_G_7(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




C5P_A_3(2YYU)
PYRF_GEOKA
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




C5P_B_4(2YYU)
PYRF_GEOKA
[Raw transfer]




C5P_B_4(2YYU)
PYRF_GEOKA
[Raw transfer]




U5P_A_3(3UWQ)
PYRF_VIBCH
[Raw transfer]




EDO_A_4(1VQT)
PYRF_THEMA
[Raw transfer]




EDO_A_9(1VQT)
PYRF_THEMA
[Raw transfer]




XPE_A_4(3UWQ)
PYRF_VIBCH
[Raw transfer]




PGE_A_7(3UWQ)
PYRF_VIBCH
[Raw transfer]




35 HHSearch 90.9157%-131 - C3 -2YYU 3.6 PYRF_GEOKA
21 PsiBlast_CBE 89.5157%-132 - C3 -2YYU 3.6 PYRF_GEOKA
51 Fugue 89.1056%-107 - C3 -1DBT 6.9 PYRF_BACSU
2 PsiBlast_PDB 88.7857%-129 - C3 -2YYU 4.2 PYRF_GEOKA
3 PsiBlast_PDB 88.1056%-110 - C3 -1DBT - PYRF_BACSU -
1 PsiBlast_PDB 87.3857%-148 - C3 -2YYT - PYRF_GEOKA -
22 PsiBlast_CBE 87.3256%-115 - C3 -1DBT 7.8 PYRF_BACSU
31 HHSearch 87.2256% -65 - C3 -1DBT 6.9 PYRF_BACSU
23 PsiBlast_CBE 86.4356%-120 - C3 -1DBT 7.4 PYRF_BACSU
32 HHSearch 84.6956% -67 - C3 -1DBT 7.4 PYRF_BACSU
52 Fugue 81.5255% -5 - C3 -1DBT 6.9 PYRF_BACSU
36 HHSearch 80.5442%-134 - C3 -3LDV - PYRF_VIBCH -
24 PsiBlast_CBE 76.8243% -28 - C3 -3UWQ 2.6 PYRF_VIBCH
4 PsiBlast_PDB 76.4743%-125 - C3 -3TFX - PYRF_LACAC -
5 PsiBlast_PDB 76.2843% -23 - C3 -3LDV - PYRF_VIBCH -
6 PsiBlast_PDB 76.0943% -27 - C3 -3UWQ 6.1 PYRF_VIBCH
39 HHSearch 74.8040%-124 * C3 *1EIX 6.5 PYRF_ECOLI
34 HHSearch 70.7243% 9 - C3 -3TFX - PYRF_LACAC -
26 PsiBlast_CBE 70.6343% -9 - C3 -1EIX 6.2 PYRF_ECOLI
10 PsiBlast_PDB 70.4537% -55 - C3 -3RU6 - PYRF_CAMJE -
27 PsiBlast_CBE 69.2443% -11 - C3 -1EIX 6.5 PYRF_ECOLI
28 PsiBlast_CBE 69.0443% -17 - C3 -1EIX 6.4 PYRF_ECOLI
7 PsiBlast_PDB 68.5643% -11 - C3 -1EIX 6.7 PYRF_ECOLI