@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0126: (2016-03-12 )
MTEIKRMLQTKEDNSKEQFYPETHVAGIVGLTEYVSGQLPTGVVSVNGKAGRVLLDAEDVHAAKKSHTHEVATYTTDGFMSSFDKQKIDQLVSPEAGVTSINGKTGIVDLFASDLDAAEINHTHAEATTTESGFLSIDDKEKLDAIQVIALETIKEVIE
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10----........20........30........--------------40------------------.......-..-50------.....--...60---------.....-....70......-----..80--........90------......--------..-100.--------...----...110.......120.......130..----------......---.140..-.....150.......------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
E
I
K
R
M
L
QTK----EDN
S
K
EQFYPE
T
H
V
A
G
I
V
G
L
T
E
Y
VSGQL--------------P-------------------
T
G
V
V
S
VN-GK-A
G
------
R
V
L
L
D
--
A
E
D
V
----------
H
A
A
KK-SHT
H
E
V
A
T
Y
TT
D
-----
G
F
M
S
--
S
F
D
K
Q
K
I
D
Q
L
------VSPEAG--------
V
T
-SING--------KT
G
----
I
V
D
L
F
ASDLD
A
A
EINHTHAEATTT--ES----------
G
F
L
SID---DKEKL
D
-
A
I
Q
V
I
A
L
E
T
I
K
E
V
IE------------------------------------------
19
Fugue
74.93
20%
13
* C3 *
4NZR
1
Y281_MYCGE
M:
[26-416]
NDGSYQSEIDLSGGANFREKFRNFANELSEAITNSPKGLDRPVPKTEISGLIKTGDNFITPSFKAGYYDHVASDGSLLSYYQSTEYFNNRVLMPILQTTNGTLMANNRGYDDVFRQVPSFSGWSNTKATTVSTSNNLTYDKWTYFAAKGSPLYDSYPNHFFEDVKTLAIDAKDISALKTTIDSEKPTYLIIRGLSGNGSQLNELQLPESVKKVSLYGD
Y
T
G
V
N
V
A
K
Q
I
F
----
A
N
V
V
E
L
E
F
Y
S
T
S
K
-
A
N
S
F
G
F
N
P
L
V
L
G
S
---------------
K
-------------------
T
N
V
I
Y
-----------------------
D
L
----------
F
A
S
K
P
F
T
H
I
D
L
T
Q
V
T
L
Q
N
-----
S
D
N
S
--
A
I
D
A
N
K
L
K
Q
A
------
V
G
D
I
Y
N
--------
Y
R
-
R
F
E
------------------
R
Q
F
Q
G
Y
F
A
G
G
Y
I
D
K
Y
L
V
K
N
V
N
T
-----------------------
N
K
D
S
D
D
-
D
L
V
Y
R
S
L
K
E
L
N
L
H
L
E
EAYREGDNTYYRVNENYYPGASIYENERASRDSEFQNEILKR
3
PsiBlast_PDB
73.28
22%
-10
- C5 -
3WFJ
1
?
A:
[114-243]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
F
V
P
M
E
N
I
--
Y
I
G
N
T
M
W
T
A
G
L
E
--------------
G
-------------------
P
G
Q
V
K
L
F
-
G
--
S
G
------
S
V
E
L
----
Q
N
L
----------
G
D
G
K
E
-
A
A
A
K
K
L
A
D
K
L
S
E
-----
S
G
L
N
--
A
H
F
S
D
N
I
H
Y
S
------
I
Y
R
K
A
C
--------
V
N
G
T
M
N
G
--------
L
C
T
----
I
L
D
V
N
M
A
E
L
G
K
T
S
T
A
H
K
M
V
A
T
I
V
N
--
E
F
----------
A
K
V
A
A
V
---
E
K
I
E
L
D
-
V
P
E
V
I
A
---------------------------------------------------
2
PsiBlast_PDB
73.22
22%
-12
- C5 -
3WFI
-
?
A:
[114-243]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
F
V
P
M
E
N
I
--
Y
I
G
N
T
M
W
T
A
G
L
E
--------------
G
-------------------
P
G
Q
V
K
L
F
-
G
--
S
G
------
S
V
E
L
----
Q
N
L
----------
G
D
G
K
E
-
A
A
A
K
K
L
A
D
K
L
S
E
-----
S
G
L
N
--
A
H
F
S
D
N
I
H
Y
S
------
I
Y
R
K
A
C
--------
V
N
G
T
M
N
G
--------
L
C
T
----
I
L
D
V
N
M
A
E
L
G
K
T
S
T
A
H
K
M
V
A
T
I
V
N
--
E
F
----------
A
K
V
A
A
V
---
E
K
I
E
L
D
-
V
P
E
V
I
A
---------------------------------------------------
21
Fugue
70.67
15%
-8
- C3 -
3BOE
2
?
A:
[2-210]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IS
P
A
Q
I
A
E
A
L
Q
G
R
G
W
D
A
E
I
V
T
D
A
S
M
A
G
Q
L
V
D
V
R
P
E
G
I
L
K
C
V
D
G
R
G
SDNTRMG
G
P
K
M
PGG
I
-------------------
Y
A
I
A
H
N
R
-
G
V
-
T
S
------
I
E
G
L
K
--
Q
I
T
K
----------
E
V
A
S
K
-
G
H
L
P
S
V
H
G
D
H
S
S
DMLGC
G
F
F
K
--
L
W
V
T
G
R
F
D
D
M
GYPRPQ
F
D
A
D
Q
G
--------
A
N
-
A
V
K
D
--------
A
G
G
----
I
I
E
M
H
H
G
S
H
T
E
K
V
V
Y
I
N
L
L
A
N
K
T
L
--
E
P
N
END
Q
R
F
I
V
D
G
W
A
A
D
K
F
GL
D
V
P
K
F
L
-
I
A
A
A
A
T
V
E
M
L
G
G
P
K
N
A
K
I
V
V
P------------------------------------
23
Fugue
68.90
17%
-25
- C1 -
1G0S
-
ADPP_ECOLI
A:
[1-209]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
K
P
D
N
L
P
V
T
F
----
G
K
N
D
V
E
I
I
A
R
E
T
L
Y
R
G
F
F
S
L
D
L
Y
R
F
R
H
R
--------------
L
FNG
Q
M
S
H
E
V
R
R
E
I
F
E
R
G
H
A
A
V
L
L
P
F
D
-
P
V
-
R
D
------
E
V
V
L
I
--
E
Q
I
R
----------
I
A
A
Y
D
-
T
S
E
T
P
W
L
L
E
M
V
A
-----
G
M
I
E
EG
E
S
V
E
D
V
A
R
R
E
------
A
I
E
E
A
G
L
I
V
K
R
T
K
P
V
L
-
S
F
L
A
--------
S
P
G
GTS
E
R
S
S
I
M
V
G
E
V
D
A
T
T
A
S
N
E
D
I
R
V
H
V
V
S
R
E
Q
----------
A
Y
Q
W
V
E
---
E
G
K
I
D
N
-
A
A
S
V
I
A
L
Q
W
L
Q
L
H
H
Q
A
L
K
N
E
W
A-----------------------------------
18
Fugue
60.59
10%
15
* C4 *
5A41
4
?
A:
[2-128]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
Y
A
P
L
N
F
I
A
I
----
G
I
G
A
T
L
G
A
W
L
R
W
V
L
G
L
K
L
N
-----
G
A
G
W
--------------
P
-------------------
W
G
T
L
T
A
N
-
L
V
-
G
G
------
Y
L
I
G
V
--
M
V
A
L
----------
I
A
S
H
P
-
E
W
P
A
W
I
R
L
A
A
V
T
-----
G
F
L
G
--
G
L
T
T
F
-------------------------------------------------
S
T
F
S
A
E
T
V
D
M
L
C
R
G
V
Y
A
T
A
A
A
Y
--
A
G
----------
A
S
L
A
G
S
---
L
A
M
T
G
L
-
G
L
A
T
V
R
L
L
L
R
-----------------------------------------------
15
Fugue
56.41
23%
15
- C2 -
2JTD
-
A:
[1-122]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
E
M
K
R
L
L
A
L
--------
S
Q
E
H
K
F
P
T
V
P
T
K
-----
S
E
L
A
V
E
I
L
--------------
E
-------------------
K
G
Q
V
R
F
W
-
M
Q
-
A
E
------
K
L
S
S
N
--
A
K
V
S
----------
Y
I
F
N
E
-
K
E
I
F
E
G
P
K
Y
-----------------
K
M
H
I
D
R
------------------------------------
N
T
G
----
I
I
E
M
F
M
E
K
L
Q
D
E
D
E
G
-----------
T
Y
----------
T
F
Q
I
Q
D
---
G
K
A
T
G
H
-
S
T
L
V
L
I
G
D
V
Y
K
K
L
Q
K
E
A
E
F--------------------------------------
22
Fugue
54.34
11%
0
- C4 -
1PQZ
-
?
A:
[5-242]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSES
G
L
R
Y
A
Y
T
L
V
V
DGTANTA
R
C
F
G
T
G
H
V
DGEAF
V
G
Y
S
NN
K
T
H
G
I
G
R
W
V
N
A
S
----
H
V
E
E
E
N
K
E
F
V
R
Q
C
K
E
L
Q
A
E
L
D
K
M
Q
N
N
S
A
--------------
V
-------------------
I
G
V
K
T
V
Q
-
L
D
-
V
G
CTS
K
I
E
K
H
Y
A
Y
--
D
G
N
E
----------
T
E
D
D
T
-
A
T
S
A
S
E
R
A
R
D
C
Q
-----
K
K
L
T
--
E
Y
R
K
L
V
L
A
S
A
------
V
S
P
Q
L
E
--------
V
E
-
R
R
S
S
G
REG
G
M
R
L
R
C
F
----
A
R
D
Y
Y
P
A
D
L
E
I
R
W
W
K
D
D
G
G
G
G
A
L
P
--
Q
T
----------
S
K
Q
H
H
D
---
P
L
P
S
G
Q
G
L
Y
Q
K
H
I
D
V
Y
V
D
G
G
L
E
HV
Y
S
C
R
V
K
G
IATGL
E
L
Q
I
V
R
WKG-------------------
14
Fugue
51.78
20%
11
* C2 *
3FC7
-
?
A:
[142-241]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
S
P
D
G
I
V
H
L
T
T
--
N
G
T
-------------------------------------
I
L
S
V
N
-
P
S
M
A
G
------
R
L
G
A
D
--
P
D
T
L
VGQQLSAVMD
S
E
A
A
N
-
Q
R
L
E
A
G
K
S
A
V
E
N
-----
G
T
A
T
--
R
S
E
D
A
V
G
G
R
H
------
Y
H
N
Q
Y
I
--------
P
V
-
D
S
H
R
--------
K
S
D
----
T
F
Q
L
V
S
R
D
I
T
-----------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
42.43
35%
24
- C5 -
1Y1X
1
?
A:
[110-146]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
--
S
N
E
V
----------
R
A
A
L
L
-
S
S
G
Y
Q
V
S
E
Q
T
F
Q
-----
A
L
M
R
--
K
F
D
R
Q
R
R
G
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
42.31
25%
14
- C5 -
2EHP
-
Y1627_AQUAE
A:
[68-118]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
V
N
V
G
K
-
G
G
------
D
I
K
L
F
L
Q
K
G
E
I
----------
Y
V
L
E
-------------
F
-----
Q
P
L
S
--
E
T
D
I
K
K
L
E
S
I
------
L
F
G
R
A
P
--------
I
P
-
K
K
T
G
------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
34.38
28%
79
* C5 *
1TH5
-
NIFU1_ORYSJ
A:
[200-224]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
R
T
--
V
R
----------
I
A
V
S
K
K
---
L
R
E
K
I
P
-
S
I
Q
I
V
Q
L
--------------------------------------------------
7
HHSearch
32.05
26%
50
- C5 -
2EFV
-
Y366_METJA
A:
[31-49]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
K
L
E
-
N
V
E
N
V
D
I
D
T
L
R
R
A
I
E
------------------------------------------
4
HHSearch
28.79
40%
174
- C5 -
2A5Z
-
?
A:
[24-40]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
P
-----
G
L
M
S
--
P
S
E
K
L
K
L
S
T
L
---------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
23.94
31%
174
- C5 -
2A5Z
-
?
A:
[24-42]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
--
T
P
----------
G
L
M
S
P
S
---
E
K
L
K
L
S
-
T
L
T
T
-----------------------------------------------------
8
HHSearch
22.83
31%
194
- C5 -
1N6J
-
G:
[5-20]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
----------
G
S
I
S
E
E
---
T
K
Q
K
L
K
-
S
A
-------------------------------------------------------
5
HHSearch
22.80
4%
69
- C5 -
1XRX
-
SEQA_ECOLI
A:
[6-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
D
E
---
L
Y
S
Y
I
A
-
S
H
T
K
H
I
G
E
S
A
S
D
I
L
R
------------------------------------------
12
HHSearch
22.52
17%
84
- C5 -
2QXF
-
EX1_ECOLI
A:
[370-393]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
F
S
D
A
---
D
R
A
A
M
K
-
I
V
L
E
T
E
P
R
N
L
P
A
---------------------------------------------
9
HHSearch
20.91
21%
15
- C5 -
1KDL
-
YOPD_YERPS
A:
[281-299]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
D
V
L
R
L
I
-------------
E
Q
Y
V
S
S
H
T
H
A
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
19.83
19%
149
- C5 -
3A1G
-
PB2_I34A1
B:
[1-27]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
R
I
K
E
L
R
N
L
M
----
S
Q
S
R
T
R
E
I
L
T
K
T
T
V
D
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------