@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0462: (2016-03-15 )
MNKLVLSTLSVAAMGMVIFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELERVGATSDVITSSFKSNNSTVTMANPVIGSFSGYAIEETEVSKIQIGSPQGDKKAGAYQTTLTFTAAFK
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------.....--.-----...--10--....-------------..---------------..-20........30.---......-.-----40......-----------.---.----50.....-----...60.----..--.-...-.70----------------------..---..-.....80...---.....-90...---....---.100.--------------..----....110------.....-..120.---....-.-.-..130.--.......--140-.-----------------....--...150.......160------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------MN
K
L
V
--
L
-----
S
T
L
--
S
V
--
A
A
M
G
-------------
M
V
---------------
I
F-SGGT
A
Y
AADKEG
N
---
T
V
V
E
Y
S-V-----EG
D
Y
T
L
V
V
-----------
P
---
E
----
K
V
NLSND-----NAT
E
M
S
----
V
K
--
T
-
I
NR-NL-----------------------EP---G
K
-
E
V
E
V
T
LSSGL---SAD
G
E
-
I
E
L
E
R---VGA
T
---
S
D
V
I
T
--------------
S
S----FKSNN
S
T
------
V
T
MAN-PVI--G---SFSG-
Y
-
A
-
I
EET-
E
--
V
S
K
I
Q
IG--SP--Q-----------------GDKK--AG
A
Y
Q
T
T
L
T
F
T
AAFK-------------------------------------------------------------------------------------------
36
Fugue
82.39
19%
-32
- C9 -
4Q3K
3
?
A:
[20-260]
---------------------------------------------------------------------------------------------------------Q
G
M
N
I
S
K
I
T
I
N
Q
H
V
--
G
-----
V
T
L
--
T
C
--
Y
V
Q
D
VSQEMSNMS
K
R
P
A
M
L
---------------
I
F
P
G
G
G
Y
Q
F
C
S
D
R
E
A
E
---
P
I
A
L
S
Y
-
L
-----
A
K
G
Y
N
A
F
V
L
RYSVKEHAVF
P
---
R
----
P
L
I
D
A
E
D
-----
A
L
S
Y
L
K
----
D
N
--
A
-
H
A
L
-
H
I
-----------------------
N
P
---
D
K
-
I
A
V
I
G
F
S
A
G
G
---
H
L
A
T
T
-
L
A
T
E
G
---
K
V
R
P
---
N
A
V
V
L
G
YPALIRHEKYWN
F
P
T
----
P
K
V
D
Q
Q
T
P
E
M
F
V
F
H
T
F
E
D
-
D
L
V
--
P
L--
S
H
P
L
-
Y
-
I
-
V
E
E
L
-
S
--
K
A
N
I
P
V
E
--
F
H
--
L
F
KSGVHGLSLGNKIVSN
G
L
D
K
--
M
I
E
D
D
V
Q
V
W
F
D
L
S
C
R
W
L
D
K
V
L
DL-----------------------------------------------------------------------------------
40
Fugue
74.93
14%
-55
- C11 -
4U0Q
-
BASI_HUMAN
B:
[23-203]
-----------------------------------------------------------------------------------------------------A
G
T
V
F
T
T
V
E
D
LGS
K
I
L
L
T
C
S
L
-----
N
D
S
--
A
T
--
E
V
T
G
-------------
H
R
---------------
W
L
-
K
G
G
V
V
L
K
E
D
A
L
P
G
---
Q
K
T
E
F
K
-
V
D
SDDQ
W
G
E
Y
S
C
V
F
-----------
L
---
P
EPM
G
T
A
N
I
Q
L
H
-----
G
P
P
R
V
K
----
A
V
--
K
-
S
S
E
-
H
I
-----------------------
N
E
---
G
E
-
T
A
M
L
V
C
K
S
E
S
---
V
P
P
------------------
V
T
D
W
A
--------------
W
Y
----
K
I
T
D
S
E
D
------
K
A
L
M
N
-
G
S
E
--
S
---
R
F
---
F
-
V
-
S
S
S
Q
-
G
--
R
S
E
L
H
I
E
--
N
L
--
N
-----------------
M
E
A
D
--
P
G
Q
Y
R
C
N
G
T
S
S
K
G
S
D
Q
A
I
I
T
L
R
V
R----------------------------------------------------------------------------------
39
Fugue
73.30
18%
-17
* C11 *
1UUN
-
MSPA_MYCS2
A:
[1-184]
----------------------------------------------------------------------------------------------------------------GL
D
N
E
L
S
--
L
VDGQD
R
T
L
--
T
V
--
Q
Q
W
D
-------------
T
F
---------------
L
N
-
G
V
---
F
P
L
D
R
N
R
L
---
T
-
R
E
W
F
-
H
-----
S
G
R
A
K
Y
I
V
-----------
A
---
G
----
P
G
A
D
E
F
E
-----
G
T
L
E
L
G
----
Y
Q
--
I
G
F
P
W
-
S
L
-----------------------
G
V
---
G
I
-
N
F
S
Y
T
T
P
N
I
L
---
I
D
D
G
D
-
I
T
R
P
P
---
F
G
L
N
---
S
V
I
T
P
--------------
N
L
----
F
P
G
V
S
I
S
------
A
D
L
G
N
G
P
G
I
--
Q
---
E
V
A
T
-
F
-
S
-
V
D
V
S
G
A
--
E
G
G
V
A
V
S
--
N
A
--
H
-----------------
G
T
V
T
--
G
A
A
G
G
V
L
L
R
P
F
A
R
L
I
A
STG
D
S
V
T
T
Y
G
EPWNMN--------------------------------------------------------------------------
35
Fugue
66.95
12%
-2
- C5 -
4YZS
-
E2AK3_HUMAN
A:
[6-302]
-------------------------------------------------------------------------------------------------------------------
S
L
V
I
--
I
-----
S
T
L
DG
R
I
--
A
A
L
D
-------------
P
E
NHGKKQ
W
D
L
D
V
GSGS
L
V
-
S
S
S
L
K
M
I
I
P
S
L
D
G
---
A
L
F
Q
W
D
-
R
-----
D
R
E
S
M
E
T
V
-----------
P
---
F
----
T
V
E
S
L
L
E
-----
S
V
V
L
V
G
----
G
K
--
S
-
L
T
T
-
Y
G
L
SAYSGKVR
Y
I
C
S
ALGCRQL
L
L
Q
R
T
---
Q
K
-
T
V
R
A
V
G
P
R
S
G
---
N
E
K
W
N
-
F
S
V
G
H
---
F
E
L
R
---
Y
K
V
S
V
--------------
A
D
----
W
K
V
M
E
W
E
------
Y
Q
F
C
T
-
P
I
A
--
S
---
A
W
L
L
-
K
-
D
-
G
K
V
I
-
P
--
I
S
I
V
E
A
A
--
R
G
--
A
-----------------
T
E
N
S
V
Y
L
G
M
Y
R
G
Q
L
Y
L
Q
S
S
---------------------------------------------------------------------------------------------
37
Fugue
63.65
19%
-3
- C6 -
4IC4
-
A:
[26-397]
K
S
V
T
R
RNDIPEAAASPPS
L
L
S
F
L
R
K
N
VGKDLSSIAMPVTSNEPIS
I
L
Q
L
I
S
E
T
FEYA
P
L
L
T
K
A
T
Q
RPD
P
I
T
F
V
S
A
F
A
I
SFLSIYRDKTRTLRKPFNPLLA
E
T
F
E
L
I
R
EDMG
F
R
L
I
S
E
K
V
--
S
-----
H
R
P
--
P
V
--
F
A
F
F
-------------
A
E
---------------
H
L
-
D
W
E
C
S
Y
T
V
T
P
S
Q
K
F
WG
K
S
I
E
L
N
-
N
-----
E
G
I
L
R
L
K
F
-----------
K
TTG
E
----
L
F
E
W
T
Q
P
-----
T
T
I
L
K
N
----
L
I
--
A
-
G
E
R
-
Y
M
-----------------------
E
P
---
V
N
-
E
F
E
V
H
S
S
K
G
-----
D
K
S
H
-
I
L
F
D
K
---
A
G
M
F
SGR
S
E
G
F
K
--------------
V
S
----
I
I
P
P
P
S
S
------
N
R
K
K
E
-
T
L
A
--
G
---
K
W
T
Q
-
S
-
L
-
A
N
E
T
-
T
--
H
E
T
I
W
E
V
--
G
D
--
L
-----------------
V
S
N
P
--
K
K
K
Y
G
F
T
-
K
F
T
A
N
L
N
EITEIEKGNLPPTDSRLR
P
D
I
R
A
Y
E
E
GN
V
D
K
A
E
E
W
K
L
K
L
E
Q
L
Q
R
E
R
R
N
K
GQDVEPKYFEKVSKN
E
W
K
Y
I
T
G
PKS
Y
W
E
R
R
K
K
HDWSDISQLW
4
PsiBlast_PDB
57.43
29%
9
- C4 -
2NRP
1
MOEA_ECOLI
A:
[309-386]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
Q
L
V
Q
-----------
P
---
L
----
L
A
K
L
S
G
N
-----
T
A
S
G
L
P
A
R
Q
R
V
R
--
T
-
A
S
R
L
K
K
-----------------------
T
P
---
G
R
----
L
D
F
Q
A
G
V
L
Q
R
N
A
D
G
E
-
L
E
V
T
T
---
T
G
H
Q
---
G
S
H
I
F
--------------
S
S
----
F
S
L
G
N
C
F
------
I
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
56.81
13%
-13
- C12 -
3F85
2
FMC1_ECOH1
A:
[141-278]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
---
I
T
V
T
A
S
-
V
-----
D
P
V
I
D
L
L
Q
-----------
A
---
D
----
G
N
A
L
P
S
A
V
K
L
A
Y
S
P
A
S
K
T
----
F
E
S
Y
R
-
V
M
T
-
Q
V
-----------------------
H
T
NDA
T
K
-
K
V
I
V
K
L
A
-------
D
T
P
Q
-
L
T
D
V
L
---
N
S
T
-----
V
Q
M
P
--------------
I
S
----
V
S
W
G
G
Q
V
------
L
S
T
T
A
-
K
E
F
E
A
A
---
A
L
G
Y
S
A
-
S
-
G
V
N
G
-
V
SS
S
Q
E
L
V
I
S
A
A
P
K
TA
G
-----------------
T
A
P
T
--
A
G
N
Y
S
G
V
V
S
-------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
55.00
20%
17
- C2 -
3ZRW
-
?
B:
[286-386]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
S
---
N
T
V
D
K
I
-
A
-----
E
G
N
L
E
A
E
V
-----------
P
---
H
----
Q
N
R
A
D
E
I
-----
G
I
L
A
K
S
----
I
E
--
R
-
L
R
R
-
S
L
-----------------------
K
Q
---
Q
A
-
D
D
R
T
L
L
M
A
G
V
---
S
H
D
L
R
-
T
P
L
T
R
---
I
R
L
A
---
T
E
M
M
S
--------------
E
Q
DGYL
A
E
S
I
N
K
D
------
I
E
E
C
N
-
A
I
I
--
E
---
Q
F
I
D
-
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
52.30
11%
22
* C9 *
3BQX
-
?
A:
[3-141]
------------------------------------------------------------------------------------------------------------------
L
Q
Q
V
A
--
V
-----
I
T
L
--
G
I
GD
L
E
A
S
-------------
A
R
---------------
F
Y
-
G
E
G
F
G
W
A
P
V
F
R
N
P
---
E
I
I
F
Y
Q
M
N
-----
G
F
V
L
A
T
W
L
-----------
V
---
Q
----
N
L
Q
E
D
V
G
-----
V
----------------
A
V
-
T
S
-----------------------
R
P
---
G
S
M
A
L
A
H
N
V
R
A
E
T
---
E
V
A
P
L
M
E
R
L
V
A
---
A
G
G
Q
---
L
L
R
P
A
--------------
D
A
----
P
P
H
G
G
L
R
------
G
Y
V
A
D
-
P
----------
D
G
-
H
-
I
-
W
E
I
A
-
F
--
N
P
V
W
P
I
G
--
A
D
--
G
-----------------
S
V
T
F
--
A
A
--------------------------------------------------------------------------------------------------------
42
Fugue
51.08
13%
-9
* C12 *
1SE9
-
MUB1_ARATH
A:
[1-101]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
-
E
V
-----------------------
H
N
---
Q
L
-
E
I
K
F
R
L
T
D
G
----
S
D
I
G
P
-
K
A
F
P
D
ATT
V
S
A
L
---
K
E
T
V
I
--------------
S
E
----
W
P
R
E
K
E
N
------
G
P
K
T
V
-
K
E
V
--
K
---
L
I
S
A
-
G
-
K
-
V
L
E
N
-
S
--
K
T
V
K
D
Y
R
--
S
P
--
V
-----------------
S
N
L
A
--
G
A
V
T
T
M
H
V
I
I
Q
A
P
V
T
EKEK---------------------------------------------------------------------------------------
3
PsiBlast_PDB
49.46
46%
-10
- C13 -
2OVS
1
?
A:
[73-99]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
I
-----
E
Q
D
Y
Q
L
V
I
-----------
P
---
K
----
K
V
-
L
S
N
D
-----
N
N
L
T
L
H
----
C
H
--
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_CBE
48.26
46%
-18
* C13 *
2OVS
1
?
B:
[73-99]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
I
-----
E
Q
D
Y
Q
L
V
I
-----------
P
---
K
----
K
V
-
L
S
N
D
-----
N
N
L
T
L
H
----
C
H
--
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
48.12
46%
-5
- C13 -
3E3C
1
?
A:
[73-99]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
I
-----
E
Q
D
Y
Q
L
V
I
-----------
P
---
K
----
K
V
-
L
S
N
D
-----
N
N
L
T
L
H
----
C
H
--
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_CBE
48.10
46%
-5
- C13 -
3E3C
1
?
B:
[73-99]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
I
-----
E
Q
D
Y
Q
L
V
I
-----------
P
---
K
----
K
V
-
L
S
N
D
-----
N
N
L
T
L
H
----
C
H
--
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
47.59
12%
4
- C12 -
3F83
1
A:
[397-482]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
-
K
V
I
V
K
L
A
-------
D
T
P
Q
-
L
T
D
V
L
---
N
S
T
-----
V
Q
M
P
--------------
I
S
----
V
S
W
G
G
Q
V
------
L
S
T
T
A
-
K
E
F
--
E
AAA
L
G
Y
S
-
A
S
G
V
N
G
V
S
-
S
--
S
Q
E
L
V
I
S
A
A
P
S
--
T
AG---------------
T
A
P
T
--
A
G
N
Y
S
G
V
V
S
-------------------------------------------------------------------------------------------------
7
PsiBlast_CBE
45.41
46%
-29
- C13 -
4KT5
1
?
B:
[70-96]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
I
-----
E
Q
D
Y
Q
L
V
I
-----------
P
---
K
----
K
V
-
L
S
N
D
-----
N
N
L
T
L
H
----
C
H
--
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
45.26
46%
-18
- C13 -
4KT5
1
?
A:
[70-96]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
I
-----
E
Q
D
Y
Q
L
V
I
-----------
P
---
K
----
K
V
-
L
S
N
D
-----
N
N
L
T
L
H
----
C
H
--
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
36.01
37%
-14
- C3 -
4HU8
1
?
A:
[346-377]
--------------------------------------------------------------------------------------------------------------------
K
I
S
--
V
-----
S
E
L
--
D
I
--
L
C
M
G
-------------
W
S
---------------
A
F
-
R
G
S
T
G
Q
G
A
D
K
D
D
M
---
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
31.76
21%
41
- C1 -
2KYW
-
?
A:
[32-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
T
Y
T
V
T
I
-----------
P
---
D
----
G
Y
E
Y
V
G
T
-------------------
D
-
G
G
V
-
V
S
-----------------------
S
D
---
G
K
-
T
V
T
I
T
F
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
29.46
32%
138
- C10 -
3BWU
3
FIMF_ECOLI
F:
[124-142]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
V
T
--
A
G
H
I
N
A
T
A
T
F
T
L
E
Y
Q
-------------------------------------------------------------------------------------------