@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu08960: (2016-06-14 )
METTKLGNLKLYGAGHAAGGAYHNVSIKGEGIVGEGLSAVGCRIYGTGLFLGKAETERLRVLGESECKGDLTAGKINIYGTMKVSGSLQFDRFNLKGQTEIGGNMTGESCDVKGKLSVIGDCETEMFHVTGCVDVSGLLNSGEIKLGLSHDISHVQEIGGTTITVKRRASFFSRKKGKLIADVIEGDRVYLENTEAAVVRGKEVIIGPGCSIGTIEYEYKCECDPHSQIKEKTKL
Atome Classification :
(19 SA)
------------------------------------.......----..10........--20.......-.30........-40---------.........50.---...-.-...60----....-..-----..-70.-.....--..80......----..90........100.......110...--.....120----.....-..-130-----........140--------------......----------...150--.....-----..-.160--..----.---.....170..--.....180--.----......190-.......-200....-----------.-..210--.......220.......230...-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------METTKLG----
N
L
K
L
Y
GAGHAAG--G
A
Y
H
N
V
S
I
K
-GEGIVGEGLSA-V----------G
C
R
I
Y
G
T
G
L
F
LG---KA
E
-
T
-
E
R
L
R
V----LGES-EC-----KG-DLT-A
G
K
I
N
--
I
Y
G
T
M
K
VS
G
S
----
L
Q
F
D
R
F
NLKGQTEIGGNMTGESC-DVKG--
K
L
S
V
I
GDC----ET
E
M
F
-
H
V
-
T
G------
C
V
D
V
S
G
LLN----------------S
G
E
I
K
L
----------GLSH-
D
--
I
S
H
V
Q
-----
E
I-GG
T
---
T
I
----
T
---
V
K
R
R
A
S
F
F
SR--KKG
K
L
I
A
D
--V----IEG
D
R
V
Y
L
E-NT
E
A
A
V
V-RG
K
E
V
I
I-----------G-PGC
S
I
--
G
T
I
E
Y
E
Y
K
CECD
P
H
S
Q
I
K
E
K
TKL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
60.29
24%
-30
- C6 -
3P4G
16
?
A:
[23-323]
------------------------HSFDHYI
G
S
A
F
D
A
S
N
N
N
V
A
----
V
T
G
N
V
S
A
T
L
N
V
L
--
A
G
D
D
K
V
S
I
D
-
G
N
--
V
E
D
V
L
V
A
-
A
----------
N
V
A
V
L
D
M
G
--------
T
G
-
N
-
D
Q
L
Y
V
----
A
G
D
V
-
L
G
-----
K
I
-
D
A
G
-
T
G
N
D
E
--
I
Y
I
K
G
D
V
S
A
A
----
V
D
A
G
T
G
N
--
D
E
V
Y
I
G
G
N
L
S
G
D
L
D
-
A
G
T
D
N
D
N
I
Q
I
G
G
D
V
----
N
A
A
L
N
-
A
G
-
T
G
N
D
N
L
I
I
G
H
D
V
S
G
I
V
N
MGT
D
N
D
T
V
E
V
GRTINA
S
G
K
V
L
L
----------
D
T
G
D
-
D
--
S
L
L
V
S
G
D
L
F
G
E
V
D
G
G
T
G
N
D
T
I
----
I
---
I
A
G
K
V
S
--
G
N
--
I
Q
G
G
T
G
N
D
--
I
----
V
R
V
Q
S
Q
V
W
A
-
E
A
N
I
S
L
G
-
T
G
D
D
V
L
I
V
EHELH
G
T
V
A
G
N
-
E
G
D
D
S
--
I
Y
L
K
F
Y
T
K
E
Q
Y
N
N
N
S
D
L
R
N
R
V
A
N
FE
H
I
R
V
SDGVVKGSPADFADY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
50.72
21%
-89
* C6 *
3DU1
-
?
X:
[0-236]
-----------------------------------H
M
N
V
G
E
I
L
----
R
H
Y
A
A
G
K
R
N
F
Q
H
--
I
N
L
Q
E
I
E
L
T
-
N
A
S
L
T
G
A
D
L
S
Y
-
A
----------
D
L
R
Q
T
R
----
L
G
---
K
S
N
-
F
-
S
H
T
C
L
READ
L
S
E
A
-
I
L
-----
W
G
I
D
L
S
-
E
A
D
L
Y
RA
I
L
R
E
A
D
L
T
G
A
KLVK
T
R
L
E
E
A
N
L
I
K
A
S
L
C
G
A
N
L
N
--
S
A
-
N
L
S
R
--
C
L
L
F
Q
A
D
L
----
R
P
S
S
N
-
Q
R
-
T
---------
D
L
G
Y
V
L
L
----------------
T
G
---
A
----------
D
L
S
Y
A
D
--
L
R
A
A
S
-----
L
H
-
H
A
N
---
L
D
----
G
---
A
K
L
C
R
A
N
F
G
R
TI
Q
W
G
N
L
A
A
D
--
L
SGAS
L
Q
G
A
D
L
S
Y
A
-
N
L
E
S
A
I
L
-
R
K
A
N
L
Q
G
-----------
A
-
D
L
T
G
A
--
I
L
K
D
A
E
L
K
G
A
I
M
P
D
G
S
I
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
38.31
19%
-19
- C6 -
4QRK
2
?
A:
[9-220]
------------------------------------
K
P
K
E
E
I
K
----
I
V
E
P
N
G
A
E
K
T
K
----
L
N
L
N
F
G
V
G
-
K
L
N
I
S
G
N
E
E
K
L
M
K
----------
G
K
F
I
Y
S
E
N
E
W
K
P
---
E
I
K
-
Y
-
E
V
K
D
K
----
D
G
E
L
-
E
I
-----
S
Q
-
P
G
L
-
K
S
-------
G
N
V
S
L
N
N
K
----
R
N
E
W
N
I
N
L
N
E
K
I
P
T
E
I
K
L
S
L
G
T
G
-
E
F
K
A
--
D
L
S
K
I
N
L
K
----
E
L
N
V
G
M
G
V
G
K
V
------
D
L
D
I
S
G
N
Y
K
----------------
N
-
N
V
K
V
----------
N
I
E
G
-
G
--
V
G
E
A
T
-----
V
Y
-
L
P
K
---
S
I
----
G
---
V
K
I
K
A
E
---
K
--
G
V
G
A
V
N
A
N
G
F
I
----
V
E
G
E
N
I
Y
K
N
-
S
Q
--------------------------
Y
G
K
S
K
--
N
S
I
E
V
N
I
E
A
G
V
G
A
-
I
N
I
K
Q
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
38.01
33%
-925
- C- -
3LYC
-
?
A:
[127-135]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
N
S
P
----
L
Q
A
E
E
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
36.29
13%
-744
- C1 -
3LYC
-
?
A:
[171-178]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Y
----------------
C
E
E
L
N
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
34.96
20%
-90
- C4 -
4P42
2
ESYT2_HUMAN
A:
[3-470]
D
T
E
R
A
E
W
L
N
K
T
V
K
H
M
W
P
F
I
C
Q
F
I
E
K
L
F
R
ET
I
E
P
A
V
R
G
A
N
T
H
L
S
----
T
F
S
F
T
K
V
D
--
V
G
--
Q
--
Q
P
L
R
I
N
-
G
V
K
V
Y
T
E
N
V
D
K
-
R
----------
Q
I
I
L
D
L
Q
I
S
F
V
G
---
N
C
E
-
I
-
D
-
L
E
I
-----
K
R
Y
-
F
C
-----
R
A
-
G
V
K
---
S
I
Q
--
I
H
G
T
M
R
V
I
L
E
----
P
L
I
G
D
M
P
L
V
G
A
L
S
I
F
F
L
R
--------
K
P
--
L
L
E
I
N
W
T
G
----
L
T
N
L
L
-
D
V
-
P
G
------
L
N
G
L
S
D
T
I
I
----------------
L
D
I
I
S
N
----------
Y
L
V
L
-
P
--
N
R
I
T
V
-----
P
L
-
V
S
E
---
V
Q
----
I
---
A
Q
L
R
---
F
P
V
--
P
K
G
V
L
R
I
H
--
F
----
I
E
A
Q
D
L
Q
G
K
-
D
T
------
Y
L
K
G
L
V
K
-----------
G
-
K
S
D
P
Y
--
G
I
I
R
V
G
--------
N
Q
I
F
Q
S
R
V
I
K
ENLSPKWN
E
V
Y
E
A
L
V
Y
EHPG
Q
E
L
E
I
E
L
F
D
EDPDKDDFL
G
S
L
M
I
D
L
I
E
V
E
K
E
R
L
L
D
E
W
F
T
L
D
EVP
K
G
K
L
H
L
R
L
E
W
L
T
L
M
PNASN
L
D
K
V
L
T
D
IGLSS
A
L
L
I
L
Y
L
D
SARNLPSSSNPN
P
V
V
Q
M
S
VGH
K
A
Q
E
S
K
I
R
Y
KTN
E
P
V
W
E
E
N
F
T
F
F
I
HNPKR
Q
D
L
E
V
E
V
R
D
EQHQCSL
G
N
L
K
V
P
L
S
Q
L
L
T
SEDM
T
V
S
Q
R
F
Q
L
S
NSGPN
S
T
I
K
M
K
I
A
L
R
V
L
H
L
E
6
HHSearch
33.50
19%
-101
- C6 -
2N3D
-
?
A:
[40-135]
------------------------------------------------------------------
S
L
L
S
-
A
D
L
T
I
E
G
G
V
T
G
-
E
G
---------
E
L
Q
I
D
G
--
V
V
K
G
---
D
V
R
-
V
-
G
R
L
T
V
----
G
E
T
G
-
H
V
-----
E
G
-
S
V
Y
-
A
E
A
V
E
--
V
R
G
R
--
V
V
G
A
----
I
T
S
K
Q
V
R
L
Y
G
T
S
Y
V
D
G
D
I
T
H
E
Q
L
-
A
M
E
T
--
G
A
F
F
Q
G
R
S
----
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
32.80
21%
-102
- C5 -
2PIG
1
?
A:
[86-198]
------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
N
N
V
R
I
G
D
N
----
V
W
I
D
R
A
D
I
S
D
G
A
R
I
S
D
N
V
T
I
Q
S
S
-
S
V
R
E
--
E
C
A
I
Y
G
D
A
RVLN
Q
S
E
I
L
-
A
---------------
A
Q
I
L
----------------
Q
I
Y
D
R
A
----------
T
V
N
H
-
S
R
I
V
H
Q
V
Q
-----
L
Y
-
G
N
A
---
T
I
----
T
HAF
I
E
H
R
A
E
V
F
D
F
--
A
---------
L
----
I
E
G
D
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
31.79
21%
-88
- C5 -
2F9C
1
?
A:
[86-198]
------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
N
N
V
R
I
G
D
N
----
V
W
I
D
R
A
D
I
S
D
G
A
R
I
S
D
N
V
T
I
Q
S
S
-
S
V
R
E
--
E
C
A
I
Y
G
D
A
R
V
LN
Q
S
E
I
L
-
A
I
-
Q
G
------
L
T
H
E
H
A
Q
I
L
----------------
Q
I
Y
D
R
A
----------
T
V
N
H
-
S
R
I
V
H
Q
V
Q
-----
L
Y
-
G
N
A
---
T
I
----
T
H
A
F
I
E
H
R
A
E
V
F
D
F
--
A
---------
L
----
I
E
G
D
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
30.69
10%
-102
* C5 *
2F9C
3
?
A:
[3-322]
------------------K
Y
R
L
S
E
G
P
R
A
F
T
Y
Q
V
DGE
K
K
S
V
L
L
R
----
Q
V
I
A
V
T
D
F
N
D
V
K
--
A
G
T
S
G
G
W
V
D
-
A
D
N
V
L
S
Q
Q
G
D
C
-
W
I
Y
D
EN
A
M
A
F
A
G
T
E
I
T
G
N
A
R
I
T
Q
---
P
C
T
L
Y
-
N
N
V
R
I
----
G
D
N
V
-
W
I
-----
D
R
-
A
D
I
-
S
D
G
A
R
--
I
S
D
N
V
T
I
Q
S
S
----
S
V
R
E
E
C
A
I
Y
G
D
A
R
V
L
N
Q
S
E
I
L
A
I
-
Q
G
L
T
--
H
E
H
A
Q
I
L
Q
----
I
Y
D
R
A
-
T
V
-
N
H
------
S
R
I
V
H
Q
V
Q
L
----------------
Y
G
N
A
T
I
T
H
A
F
I
E
HR
A
E
V
F
D
F
-
A
--
L
I
E
G
D
-----
K
D
-
N
N
V
---
W
I
C
D
C
A
K
---
V
Y
G
H
A
R
V
I
A
G
--
T
E
E
D
A
I
P
T
--
L
----
R
Y
S
S
Q
V
A
E
H
A
L
I
E
G
N
C
V
-
L
K
H
H
V
L
V
-----------
G
-
G
H
A
E
V
R
G
G
P
I
L
L
D
D
R
V
L
I
E
G
H
A
C
I
Q
G
E
I
L
I
E
R
Q
V
E
I
S
G
R
A
A
V
I
A
FDD
N
T
I
H
L
R
G
P
K
V
I
N
G
EDRITRTPL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
29.49
20%
-92
- C6 -
2N3D
-
?
A:
[40-138]
-----------------------------------------------------------------------------------------------
S
L
L
S
A
D
L
T
I
E
G
---
G
V
T
-
G
E
G
E
L
Q
I
----
D
G
V
---
V
-----
K
G
-
D
V
R
-
V
G
R
L
T
--
V
G
E
T
G
H
V
E
G
S
----
V
Y
A
E
A
V
E
V
R
G
R
V
--
V
G
A
I
T
S
K
Q
V
-
R
L
Y
G
--
T
S
Y
V
D
G
D
I
----
T
H
E
Q
L
-
A
M
-
E
T
------
G
A
F
F
Q
G
R
S
L
----------------
K
F
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
27.09
21%
-393
- C3 -
4V02
-
MINC_AQUAE
C:
[18-31]
---------------------------------------------------------------------------------------------------------------------
I
E
H
----
R
G
D
I
-
L
I
-----
L
G
-
D
V
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
26.85
7%
-489
* C7 *
4OPW
-
?
A:
[97-111]
-----------------------------------------------------------------------------------------------------------------------------
A
N
F
-
I
A
-----
N
S
-
P
L
K
-
G
D
E
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
25.06
7%
-402
- C7 -
3JX8
2
?
A:
[106-119]
----------------------------------------------------------------------------------------------------------------------------
S
G
S
F
-
I
I
-----
S
K
-
P
T
K
-
V
N
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
25.03
36%
-167
- C5 -
4E75
-
LPXD_ACIBS
A:
[263-330]
--------------------------------------
S
T
K
I
G
K
---
N
C
I
L
A
G
A
C
G
V
A
G
H
L
S
I
A
D
N
V
T
L
T
-
G
M
S
M
V
T
K
N
I
S
E
-
A
----------
G
T
Y
S
S
G
T
G
L
F
E
N
N
H
W
K
K
T
-
I
-
V
R
L
R
Q
----
L
A
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
24.76
36%
-154
- C5 -
4E79
-
LPXD_ACIBS
A:
[263-330]
--------------------------------------
S
T
K
I
G
K
---
N
C
I
L
A
G
A
C
G
V
A
G
H
L
S
I
A
D
N
V
T
L
T
-
G
M
S
M
V
T
K
N
I
S
E
-
A
----------
G
T
Y
S
S
G
T
G
L
F
E
N
N
H
W
K
K
T
-
I
-
V
R
L
R
Q
----
L
A
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
22.68
12%
-37
* C8 *
2R5R
2
GCH4_NITEU
A:
[23-268]
-----------------------------------H
I
A
I
D
R
V
G
I
K
A
I
R
H
P
V
V
V
A
D
K
G
G
G
--
S
Q
H
T
V
A
Q
F
N
M
Y
V
N
L
P
H
N
F
K
G
T
-
H
M---------
S
R
F
V
E
I
L
N
S
H
E
R
---
E
I
S
-
V
-
E
S
F
E
E
----
I
L
R
S
M
V
S
R
L
ESD
S
G
-
H
I
E
M
A
F
P
Y
F
--
I
N
K
S
A
P
V
S
G
V
----
K
S
L
L
D
Y
E
V
T
F
I
G
E
I
K
H
G
N
Q
Y
S
F
T
M
K
V
I
V
--
P
V
T
S
L
C
P
C
----
S
K
K
I
S
-
D
Y
-
G
----------
A
H
N
Q
R
S
----------------
H
V
T
I
S
V
----------
R
T
N
S
-
F
--
I
W
I
E
D
-----
I
I
-
R
I
A
---
E
E
----
Q
---
A
--
S
C
E
L
Y
G
L
--
L
K
R
P
D
E
K
Y
--
V
----
T
E
R
A
Y
N
N
P
K
-
F
V
E
D
I
V
R
-
D
V
A
E
V
L
N
-----------
H
D
D
R
I
D
A
--
Y
I
V
E
S
E
N
F
E
S
I
H
N
H
S
A
Y
A
L
I
E
R
D
K----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
18.55
33%
-
- C2 -
4OPW
-
?
A:
[216-224]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
G
N
I
R
Y
K
G
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
14.88
18%
-64
- C8 -
2I9F
3
NCAP_EAVBU
A:
[6-64]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
H
H
--
E
P
G
D
L
R
H
D
--
L
----
N
Q
Q
E
R
A
T
L
S
-
S
N
V
Q
R
F
F
M
I
G
H
G
S
L
T
-----------
A
-
D
A
G
G
-------
L
T
Y
T
V
S
W
V
P
T
K
Q
I
Q
R
K
V
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------