@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu14650: (2016-06-23 )
MTQMRFTEEDFNTFTIEGLDARMEVLKETVRPKLTALGEHFAPTLSALTGDEMFPHVAKHARRSVNPPADSWVAFANSKRGYKKLPHFQIGLWESHVFVWFAIIYESPIKEEYGKLLEVNQETITKNIPDSFVWSADHTKPGVHKQSEMDKEQLKTLFERLQTVKKAELLCGIQLQKEEVLNMNNQEFLQRIDDAFKQLAFLYRLTQKVTQA
Atome Classification :
(20 SA)
----------------------------------------------......------.-..10------........20--...-.....30--------.---------..-----....----..--40..-......50..-..-.....60...---....-.70.-.......80-----------.....---------...90------.....-...---.100..------...-...110--...------------.--...120-------.---.------.......130.......140--..-.....-150.......---160..-..--...170.......180.......190--.--------------.----.......200-.-----.......210-----------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------MTQ
M
R
F
------T-EEDF------
N
T
F
T
IE
G
L
D
A
--
R
M
E
-
V
L
K
E
T
V---------
R
---------
P
K
-----
L
T
A
L
----
G
E
--
H
F
A
P
-
T
L
S
ALTG-
D
E
-
M
F
-
P
H
V
A
K
H
A
R
RS---VNPP-A
D
S
W
-
V
A
F
ANSKRG-----------YKKLP---------
H
F
Q
I
-------
G
LWES-
H
V
F
---
V
W
-
F
A
I
------
I
YE-S
P
I
K
E
E
--
Y
G
K
------------
L
--
L
EV
N
---------
Q
---
E
------
T
ITKNIPDS
F
V
WSADHTKPG--VH-
K
Q
S
EM-
D
K
E
Q
L
K
T
L
F
E
---
R
L
Q
T
V
-
K
K
--
A
E
L
LCG
I
Q
L
Q
K
E
E
V
LNMN
N
Q
E
F
L
Q
----
R
--------------
I
----
D
D
A
F
K
Q
L
A
-
F
-
L
-----
Y
R
L
T
Q
K
V
TQA-----------------------------------
12
HHSearch
89.84
100%
-119
- C6 -
2A8E
3
YKTB_BACSU
A:
[2-211]
-----------------------------------------------
T
Q
M
R
F
------
T
-
E
E
D
F
------
N
T
F
T
I
E
G
L
D
A
--
R
M
E
-
V
L
K
E
T
V
---------
R
---------
P
K
-----
L
T
A
L
----
G
E
--
H
F
A
P
-
T
L
S
A
L
T
G
-
D
E
-
M
F
-
P
H
V
A
K
H
A
R
R
S
---
V
N
P
P
-
A
D
S
W
-
V
A
F
A
N
S
K
R
G
-----------
Y
K
K
L
P
---------
H
F
Q
I
-------
G
L
W
E
S
-
H
V
F
---
V
W
-
F
A
I
------
I
Y
E
-
S
P
I
K
E
E
--
Y
G
K
------------
L
--
L
E
V
N
---------
Q
---
E
------
T
I
T
K
N
I
P
D
S
F
V
W
S
A
D
H
T
K
P
G
--
V
H
-
K
Q
S
E
M
-
D
K
E
Q
L
K
T
L
F
E
---
R
L
Q
T
V
-
K
K
--
A
E
L
L
C
G
I
Q
L
Q
K
E
E
V
L
N
M
N
N
Q
E
F
L
Q
----
R
--------------
I
----
D
D
A
F
K
Q
L
A
-
F
-
L
-----
Y
R
L
T
Q
K
V
T
Q
------------------------------------
1
PsiBlast_PDB
89.23
97%
-119
- C6 -
2A8E
3
YKTB_BACSU
A:
[2-211]
-----------------------------------------------
T
Q
M
R
F
------
T
-
E
E
D
F
------
N
T
F
T
I
E
G
L
D
A
--
R
M
E
-
V
L
K
E
T
V
---------
R
---------
P
K
-----
L
T
A
L
----
G
E
--
H
F
A
P
-
T
L
S
A
L
T
G
-
D
E
-
M
F
-
P
H
V
A
K
H
A
R
R
S
---
V
N
P
P
-
A
D
S
W
-
V
A
F
A
N
S
K
R
G
-----------
Y
K
K
L
P
---------
H
F
Q
I
-------
G
L
W
E
S
-
H
V
F
---
V
W
-
F
A
I
------
I
Y
E
-
S
P
I
K
E
E
--
Y
G
K
------------
L
--
L
E
V
N
---------
Q
---
E
------
T
I
T
K
N
I
P
D
S
F
V
W
S
A
D
H
T
K
P
G
--
V
H
-
K
Q
S
E
M
-
D
K
E
Q
L
K
T
L
F
E
---
R
L
Q
T
V
-
K
K
--
A
E
L
L
C
G
I
Q
L
Q
K
E
E
V
L
N
M
N
N
Q
E
F
L
Q
----
R
--------------
I
----
D
D
A
F
K
Q
L
A
-
F
-
L
-----
Y
R
L
T
Q
K
V
T
Q
------------------------------------
13
HHSearch
58.34
26%
-96
- C6 -
3MQZ
3
?
A:
[12-213]
------------------------------------------------
L
Q
D
Y
------
L
L
P
E
W
V
------
S
I
F
D
I
A
D
F
S
G
--
R
M
L
-
R
I
R
G
D
I
---------
R
---------
P
A
-----
L
L
R
L
----
A
S
--
R
L
A
E
-
L
L
N
E
S
P
G
P
R
P
-
W
Y
-
P
H
V
A
S
H
M
R
R
R
---
V
N
P
P
-
P
E
T
W
-
L
A
L
G
P
E
K
R
G
-----------
Y
K
S
Y
A
---------
H
S
G
V
-------
F
I
G
G
R
-
G
L
S
---
V
R
-
F
I
L
------
K
D
E
-
A
I
E
E
R
K
--
N
L
G
------------
R
--
W
M
S
R
S
--------
G
---
P
A
F
E
---
Q
W
K
K
K
V
G
D
L
R
D
F
G
P
V
H
D
D
P
M
--
A
D
-
P
---
P
K
V
E
W
D
P
R
V
F
G
E
---
R
L
G
S
L
-
K
S
--
A
S
L
D
I
G
F
R
V
T
F
D
T
S
L
A
------------
G
--------------
I
----
V
K
T
I
R
T
F
D
-
L
-
L
-----
Y
A
E
A
E
K
---------------------------------------
2
PsiBlast_PDB
53.62
28%
-79
- C6 -
3MQZ
2
?
A:
[22-188]
----------------------------------------------------------------------
S
I
F
D
I
A
D
F
S
G
--
R
M
L
-
R
I
R
G
D
I
---------
R
---------
P
A
-----
L
L
R
L
----
A
S
--
R
L
A
E
-
L
L
N
E
S
P
G
-
P
R
P
W
Y
-
P
H
V
A
S
H
M
R
R
R
---
V
N
P
P
-
P
E
T
W
-
L
A
L
G
P
E
K
R
G
-----------
Y
K
S
Y
A
---------
H
S
G
V
-------
F
I
G
G
R
-
G
L
S
---
V
R
-
F
-
I
------
L
K
D
-
E
A
I
E
E
R
K
N
L
G
R
------------
W
--
M
S
R
S
---------
G
P
A
F
E
------
Q
W
K
K
K
V
G
D
L
R
D
F
G
P
V
H
D
D
P
M
--
A
D
P
P
K
V
E
W
-
D
P
---
R
V
F
G
E
---
R
L
G
S
L
-
K
S
--
A
S
L
D
I
G
F
R
V
-----------------------------------------------------------------------------------------------------
28
Fugue
39.71
16%
-89
* C3 *
2AXP
-
YORR_BACSU
A:
[2-173]
----------------------------------------------------------------------
T
L
I
I
L
E
G
P
D
C
CF
K
S
T
-
V
A
A
K
L
S
---------
K
---------
E
L
-----
K
Y
P
I
----
I
K
--
G
S
S
F
-
E
L
A
K
S
G
N
-
E
K
-
L
F
-
E
H
F
N
K
L
A
D
E
D
N
V
I
I
D
R
F
-
V
Y
S
N
-
L
V
Y
A
K
K
F
K
D
-----------
Y
S
I
L
T
---------
E
R
Q
L
-------
R
F
I
E
D
-
K
I
K
---
A
K
-
A
K
V
------
V
Y
L
-
H
A
D
P
S
V
--
I
K
K
------------
R
--
L
R
V
R
---------
G
---
D
------
E
Y
I
E
G
----------------------------
K
D
I
D
S
I
L
E
---
L
Y
R
E
V
M
S
N
--
A
G
L
---------
H
T
Y
S
W
D
T
G
Q
W
------
S
--------------
S
----
D
E
I
A
K
D
I
I
-
F
-
L
-----
V
E
L
E
H
H
H
H
H
H
-----------------------------------
4
PsiBlast_PDB
35.44
35%
-210
- C7 -
4PZ8
3
MCE1_SCHPO
A:
[258-292]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
F
A
Q
P
E
E
G
DID--------
Y
S
A
M
P
---------
E
F
Q
L
-------
G
V
W
E
G
R
N
M
Y
---
S
F
-
F
A
F
------
M
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
35.42
12%
-69
- C3 -
4KVS
3
ALDEC_PROMM
A:
[22-242]
----------------------------------------ALPDFT
S
D
R
Y
K
D
------
A
-
Y
S
R
I
------
N
A
I
V
I
E
G
E
Q
E
--
A
H
D
-
N
Y
I
A
I
G
---------
T
L
L
P
DH
V
E
E
L
K
R
-----
L
A
K
M
----
E
M
--
R
H
K
K
-
G
F
T
A
C
G
K
-
N
L
-
G
V
-
E
A
D
M
D
F
A
R
E
F
---
F
A
P
L
-
R
D
N
F
-
Q
T
A
L
G
Q
G
K
------------
T
P
T
C
L
---------
L
I
Q
A
-------
L
L
I
E
A
-
F
A
I
---
S
F
-
Y
H
T
------
Y
I
P
-
V
S
D
P
F
A
--
R
K
I
------------
T
--
E
G
V
V
---------
K
---
D
------
E
-
Y
T
H
L
N
Y
G
E
A
W
L
K
A
N
L
E
S
C
--
R
E
-
E
L
L
E
A
-
N
R
E
N
L
P
L
I
R
R
---
M
L
D
Q
V
-
A
G
--
D
A
A
V
L
Q
M
D
------
K
E
D
L
I
E
D
F
L
I
----
A
--------------
Y
----
Q
E
S
L
T
E
I
G
-
F
-
N
-----
T
R
E
I
T
R
M
A
A
A
AL---------------------------------
5
PsiBlast_PDB
35.41
35%
-194
* C7 *
4PZ6
-
MCE1_SCHPO
A:
[256-292]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
F
A
Q
P
E
E
G
DID--------
Y
S
A
M
P
---------
E
F
Q
L
-------
G
V
W
E
G
R
N
M
Y
---
S
F
-
F
A
F
------
M
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
35.26
11%
-80
- C4 -
2MXZ
1
ENLYS_BPT5
A:
[108-136]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
F
G
A
D
W
N
A
SGDYHDEIKRG
T
Y
D
G
G
---------
H
V
E
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
35.11
16%
-83
- C5 -
3CZ6
3
RAP1_YEAST
A:
[4-154]
-----------------------------------------------
R
S
D
F
S
------
N
-
E
D
I
Y
------
D
N
I
D
P
D
T
I
S
F
-------------------------------
P
P
-----
K
I
A
T
----
T
D
--
L
F
L
P
-
L
F
F
H
F
G
S
-
T
R
-
Q
F
M
D
K
L
H
E
V
I
S
G
D
---
Y
E
P
S
Q
A
E
K
L
-
V
Q
D
L
C
D
E
T
G
-----------
I
R
K
N
F
---------
S
T
S
I
-------
L
T
C
L
S
-
G
D
L
M--
V
F
-
P
R
Y
------
F
L
N
M
F
K
---------------------------
D
---------
N
---
V
------
N
P
P
P
N
V
P
G
--
I
W
T
-------------------------------------------------
H
D
D
D
E
S
L
K
S
N
D
Q
E
Q
I
R
----
K
--------------
L
----
V
K
K
H
G
T
G
R
M
E
M
R
-----
K
R
F
F
E
K
---------------------------------------
26
Fugue
35.01
15%
-87
- C3 -
1QB7
3
?
A:
[1-236]
--------------------------------------------------
P
F
------
K
-
E
V
S
P
------
N
S
F
L
L
D
D
S
H
A
--
L
S
Q
-
L
L
K
K
S
Y
---------
R
---------
W
Y
-----
S
P
V
F
SPRN
V
P
--
R
F
A
D
-
V
S
S
I
T
E
S
-
P
E
-
T
L
-
K
A
I
R
D
F
L
V
Q
R
---
Y
R
A
M
-
S
P
A
P
T
H
I
L
G
F
D
A
R
G
-----------
F
L
F
G
P
---------
M
I
A
V
-------
E
L
E
I
P
-
F
V
L
---
M
R
-
K
A
D
KNA
G
L
L
I
R
S
-
E
P
Y
E
K
E
--
Y
K
E
AAPE--------
V
--
M
T
I
R
---------
Y
---
G
------
S
I
G
K
G
--
S
R
V
V
L
I
D
D
V
L
A
T
G
G
T
A
L
-
S
G
L
Q
L
-
V
E
A
S
D
A
V
V
V
E
---
M
V
S
I
L
-
S
I
--
P
F
L
K
A
A
E
K
I
H
S
T
A
N
S
R
Y
K
D
I
K
F
I
S
----
L
--------------
L
----
S
D
D
A
L
T
E
E
-
N
-
C
GDSKN
Y
T
G
P
R
V
L
S
C
G
D
V
L
A
E
H
PH---------------------------
22
Fugue
34.94
10%
-79
- C- -
1NOG
-
?
A:
[23-171]
-----------------------------------------------
S
P
V
V
E
------
V
-
Q
G
T
I
------
D
E
L
N
S
F
I
G
Y
A
--
L
V
L
-
S
R
W
D
D
I
---------
R
---------
N
D
-----
L
F
R
I
----
Q
N
--
D
L
F
V
-
L
G
E
D
V
S
T
-
G
G
-------------------------------------------------------------------------------------------------
K
G
-
R
T
V
T
R
E
--
M
I
D
------------
Y
--
L
E
A
R
---------
V
---
K
------
E
M
K
A
E
I
G
K
I
----
E
L
F
V
V
P
G
-----------
G
S
V
E
S
A
S
L
H
M
---
A
R
A
V
S
-
R
R
--
L
E
R
R
I
-
V
A
A
S
K
L
T
E
I
N
K
N
V
L
I
Y
A
N
----
R
--------------
L
----
S
S
I
L
F
M
H
A
-
L
-
I
-----
S
N
K
R
L
N
I
P
E
K
I
W---------------------------------
29
Fugue
33.03
22%
-15
- C2 -
4BE3
2
?
A:
[1-312]
------------------------------------TKY
P
S
E
L
I
P
Q
M
D
E
W
K
I
L
L
GDGT
H
-
K
E
D
L
VN
Y
A
K
D
D
F
F
Y
V
E
H
E
N
E
--
T
D
W
-
V
V
F
K
T
P
NSGITSRTS
S
---------
N
T
-----
R
T
E
L
----
G
Q
K
K
H
W
I
P
E
T
G
G
K
L
N
A
-
T
L
-
K
V
-
Q
H
V
S
T
S
G
D
A
R
---
V
A
A
S
-
Y
S
V
V
-
V
G
Q
I
H
S
D
E
G
HENEP
I
K
I
F
--
Y
K
K
F
P
GHT
K
G
S
V
F
W
N
Y
E
I
NTKGDNS
K
R
W
D
Y
-
S
T
A
---
V
W
G
Y
D
M
------
S
V
V
-
G
P
T
A
T
S
--
Y
P
E
EPED
G
I
A
LG
E
E
F
S
--
Y
E
I
N
---------
V
---
Y
EG
I
M
Y
L
T
F
S
S
E
G
H
K
T
I
K
F
T
K
N
L
L
K
S
N
--
F
T
-
K
K
S
D
I
--
P
Q
Q
I
K
T
L
Y
A
SIG
R
D
G
I
E
-
R
E
--
N
A
Y
A
G
E
I
Q
Y
F
K
L
G
A
Y
N
Q
T
N
G
K
S
P
E
----
D
NLVWSTGADVYDGD
I
----
A
K
Q
Y
A
N
G
S
-
Y
-
A
-----
E
V
W
F
K
E
A
T
L
G
S
G
SAPE-----------------------------
3
PsiBlast_PDB
31.83
35%
-168
- C7 -
4PZ7
2
MCE1_SCHPO
A:
[258-292]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
F
A
Q
P
E
E
G
DID--------
Y
S
A
M
P
---------
E
F
Q
L
-------
G
V
W
E
G
R
N
M
Y
---
S
F
-
F
A
F
------
M
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
30.25
9%
-96
- C3 -
3M6N
-
?
A:
[13-281]
------------------------------GST
L
R
I
I
E
E
PQRD
V
Y
W
I
H
M
H
A
D
------
L
-
R
A
C
F
------
S
T
R
L
V
D
D
I
T
G
--
Y
Q
T
-
N
L
G
Q
R
L
---------
N
---------
T
A
GVLA
P
H
V
V
L
----
A
S
--
D
S
D
V
-
F
N
L
G
G
D
L
-
A
L
-
F
C
-
Q
L
I
R
E
G
D
R
A
R
---
L
L
D
Y
-
A
Q
R
C
-
V
R
G
V
H
A
F
H
V
-----------
G
L
G
A
R
---------
A
H
S
I
-------
A
L
V
Q
G
-
N
A
L
G
G
G
F
E
-
A
A
L
------
S
C
H
-
T
I
I
A
E
E
--
G
V
M
------------
M
G
L
P
E
V
L
FDLFPGMG
A
Y
---
S
------
F
M
C
Q
R
I
S
A
H
L
A
Q
K
I
M
L
E
G
N
L
--
Y
S
-
A
E
Q
L
L
-
G
M
G
L
V
D
R
V
V
P
---
R
G
Q
G
V
-
A
A
--
V
E
Q
V
I
R
E
S
K
R
T
P
H
A
W
A
A
M
Q
Q
V
R
E
M
TTAV
P
--------------
L
----
E
E
M
M
R
I
T
E
-
I
-
W
-----
V
D
T
A
M
Q
L
G
E
K
S
L
R
T
M
D
R
L
V
R
A
Q
S----------------------
24
Fugue
29.10
8%
-110
* C5 *
3N7Q
3
MTEF1_HUMAN
A:
[5-302]
MIT
N
E
Q
D
L
K
M
F
L
L
S
K
GAS
K
E
V
I
A
S
I
I
S
R
Y
PRAITRT
P
E
N
L
S
K
R
W
D
L
W
R
K
I
V
T
------
S
-
D
L
E
I
------
V
N
I
L
E
R
S
P
E
S
--
F
F
R
S
N
N
N
L
N
L
---------
E
---------
N
N
-----
I
K
F
L
----
Y
S
--
V
G
L
T
-
R
K
C
L
C
R
L
-
L
T
-
N
A
-
P
R
T
F
S
N
S
L
D
L
---
N
K
Q
M
-
V
E
F
L
-
Q
A
A
G
L
S
L
G
H
-----------
N
D
P
A
D
---------
F
V
R
K
-------
I
I
F
K
N
-
P
F
I
---
L
I
-
Q
S
T
------
K
R
V
-
K
A
N
I
E
F
--
L
R
S
------------
T
--
F
N
L
N
---------
S
---
E
------
E
L
L
V
L
I
C
G
P
G
A
E
I
L
D
L
S
N
D
Y
--
A
R
-
R
S
Y
A
N
-
I
K
E
K
L
F
S
L
G
C
---
T
E
E
E
V
-
Q
K
--
F
V
L
S
Y
P
D
V
I
F
L
A
E
K
K
F
N
D
K
I
D
C
L
M
----
E
--------------
E
NIS
I
S
Q
I
I
E
N
P
R
-
V
-
L
-----
D
S
S
I
S
T
L
K
S
R
I
K
E
L
V
NAGCNLSTLNITLLSWS
K
K
R
Y
E
A
K
L
K
K
L
S
R
11
PsiBlast_PDB
26.56
38%
51
- C6 -
5ABM
1
AL1A1_SHEEP (first)
A:
[337-370]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
G
--
V
S
-
Q
G
P
Q
I
-
D
K
E
Q
Y
E
K
I
L
D
---
L
I
E
S
G
-
K
K
E
G
A
K
L
E
C
G
--------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
26.22
24%
-134
- C6 -
3E56
-
?
A:
[13-55]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
V
-------
G
V
Y
E
C
-
E
I
H
---
L
K
-
F
R
L
------
I
E
E
-
K
S
L
L
S
D
--
R
E
Q
------------
L
--
L
Q
V
L
---------
L
---
D
------
A
L
T
E
G
S
D
D
------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
26.12
29%
-
- C6 -
3TWE
1
?
A:
[9-25]
-------------------------------------------------------------------------
E
L
E
D
L
Q
E
--
R
L
R
-
K
L
R
K
K
L
---------
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
25.94
38%
63
- C6 -
5AC1
1
AL1A1_SHEEP
A:
[338-371]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
G
--
V
S
-
Q
G
P
Q
I
-
D
K
E
Q
Y
E
K
I
L
D
---
L
I
E
S
G
-
K
K
E
G
A
K
L
E
C
G
--------------------------------------------------------------------------------------------------------