@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu17270: (2016-06-27 )
MRRFLLNVILVLAIVLFLRYVHYSLEPEPSNQPDTYSNFSSLAENESPADYDISYNEKKGSKVLIMSPHGGRIEGGVSELVRYFNNEYSTYLFEGLKSHDNQTLHITSTNFDEPLAKKKIKEHQYVVAFHGYKGENKNTLVGGTDRKRAKMIVRALERRGFSAELASSKSGLAGLNAENINNQGETGLSIQLEISREQREAFFDDFYYKNRKYTKNSEFYAYVSAIKGVLEKEYS
Atome Classification :
(20 SA)
------------------------------------------------.-...-.....10........------20.......----------.30.....--...40...--..-...50.....---...60......------------------...70........80.....--.--.---.90..------......100.......110--...-....------120-.......130....-----.------------.-----------.------.-140------...-----....150.......-160...----------....170......-..-180........190.......200.--...-..-.210....-...-..220......---------.230...------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------M-
R
R
F
-
L
L
N
V
I
L
V
L
A
I
V
L
F
L
R
------
Y
V
H
YSLEPE----------PSNQPDTY--
S
N
F
S
S
L
AE--NE-SPADYDISYN---EKKG-
S
K
V
L
I
M------------------SPHGGRIEG
G
V
S
E
L
V
R
Y
FNN--
E
--
Y
---
S
T
Y
L
F
------
E
G
L
K
SHDN
Q
T
L
H
I
TSTNFD--E
P
L
-
A
K
K
K
------IKE-H
Q
Y
V
V
A
F
HG-YKGE-----N------------K-----------
N
------
T
-LVG------GT
D
-----
R
K
R
A
K
M
I
V
R
A
L
E
RR-GFS
A
E
L----------ASSKSG-LAGLNA-EN-I-NNQGET
G
L
S
I
Q
L
E
I
S
R
E
Q
R
E
A
F
F
--
D
D
F
-
Y
Y-KN--RKYT-KN
S
-
E
F
Y
A
Y
V
S
A
I
K
G
---------
V
L
E
KEYS------
1
HHSearch
85.54
39%
-47
- C9 -
3A9L
2
?
A:
[4-208]
--------------------------------------------------------------------------------------------------
T
D
T
Y
--
P
N
I
E
A
L
E
N
--
A
E
T
V
G
V
A
Y
N
I
E
V
K
----
R
Q
N
-
P
S
M
I
Y
F
------------------
S
P
H
A
G
G
I
E
V
G
T
T
E
L
I
Y
R
V
V
E
L
T
G
--
G
---
S
L
Y
L
F
------
Q
G
L
L
P
S
G
N
S
R
L
H
V
T
S
T
H
F
D
--
E
P
M
-
A
V
C
M
------
L
S
K
-
H
T
D
A
V
S
F
H
G
-
Y
K
D
D
Y----
N
------------
K
-----------
N
------
T
-
L
V
G
------
G
L
N
-----
T
E
L
R
N
L
I
V
S
K
L
N
S
K
-
G
I
A
A
E
V
----------
A
T
--
D
R
-
F
T
A
T
D
P
-
D
N
-
I
-
V
N
R
C
A
S
G
K
G
V
Q
L
E
I
S
S
A
Q
R
R
A
F
F
--
Q
N
N
-
D
--
W
S
KA
N
R
G
N
-
V
T
Q
-
E
F
L
D
Y
A
E
A
I
K
E
---------
A
E
A
E
Y
Y
G
------
27
Fugue
81.93
37%
-46
- C9 -
3A9L
2
?
A:
[4-210]
--------------------------------------------------------------------------------------------------
T
D
T
Y
--
P
N
I
E
A
L
E
N
--
A
E
-
T
V
G
V
A
Y
N
I
E
V
---
K
R
Q
N
-
P
S
M
I
Y
F
------------------
S
P
H
A
G
G
I
E
V
G
T
T
E
L
I
Y
R
V
V
E
--
L
T
G
G
---
S
L
Y
L
F
------
Q
G
L
L
P
S
G
N
S
R
L
H
V
T
S
T
H
F
D
--
E
P
M
-
A
V
C
M
------
L
S
K
-
H
T
D
A
V
S
F
H
G
-
Y
K
D
D
-----
Y
N
-----------
K
-----------
N
------
T
-
L
V
G
------
G
L
N
-----
T
E
L
R
N
L
I
V
S
K
L
N
S
K
-
G
I
A
A
E
V
----------
A
T
D
R
---
F
T
A
T
D
P
-
D
N
-
I
-
V
N
R
C
A
S
G
K
G
V
Q
L
E
I
S
S
A
Q
R
R
A
F
F
--
Q
N
N
D
W
S
-
K
A
--
N
R
G
N
-
V
T
Q
-
E
F
L
D
Y
A
E
A
I
K
E
---------
A
E
A
E
Y
Y
G
L
E----
26
PsiBlast_CBE
74.34
40%
-41
- C9 -
3A9L
2
?
B:
[4-185]
--------------------------------------------------------------------------------------------------
T
D
T
Y
--
P
N
I
E
A
L
E
N
--
A
E
-
T
V
G
---
V
A
Y
N
IEV
K
R
Q
N
-
P
S
M
I
Y
F
------------------
S
P
H
A
G
G
I
E
V
G
T
T
E
L
I
-
Y
R
V
V
--
E
--
L
TGG
S
L
Y
L
F
------
Q
G
L
L
P
S
G
N
S
R
L
H
V
T
S
T
H
F
D
--
E
P
M
-
A
V
C
M
------
L
S
K
-
H
T
D
A
V
S
F
H
G
-
Y
K
D
D
Y----
N
------------
K
-----------
N
------
T
-
L
V
G
------
G
L
N
-----
T
E
L
R
N
L
I
V
S
K
L
N
S
K
-
G
I
A
A
E
V
----------
A
T
D
R
---
F
T
A
T
D
P
-
D
N
-
I
-
V
N
R
C
A
S
G
K
G
V
Q
L
E
I
S
S
A
Q
R
R
A
F
F
QN
N
D
W
-
S
K
-
A
N
--
R
-----------------------------------------
11
PsiBlast_PDB
72.69
40%
-36
- C9 -
3A9L
2
?
A:
[4-185]
--------------------------------------------------------------------------------------------------
T
D
T
Y
--
P
N
I
E
A
L
E
N
--
A
E
-
T
V
G
---
V
A
Y
N
I
E
V
K
R
Q
N
-
P
S
M
I
Y
F
------------------
S
P
H
A
G
G
I
E
V
G
T
T
E
L
I
-
Y
R
V
V
--
E
--
L
T
G
G
S
L
Y
L
F
------
Q
G
L
L
P
S
G
N
S
R
L
H
V
T
S
T
H
F
D
--
E
P
M
-
A
V
C
M
------
L
S
K
-
H
T
D
A
V
S
F
H
G
-
Y
K
D
D
Y----
N
------------
K
-----------
N
------
T
-
L
V
G
------
G
L
N
-----
T
E
L
R
N
L
I
V
S
K
L
N
S
K
-
G
I
A
A
E
V
----------
A
T
D
R
---
F
T
A
T
D
P
-
D
N
-
I
-
V
N
R
C
A
S
G
K
G
V
Q
L
E
I
S
S
A
Q
R
R
A
F
F
QN
N
D
W
-
S
K
-
A
N
--
R
-----------------------------------------
30
Fugue
49.92
21%
-95
- C3 -
4UN1
1
?
B:
[21-179]
------------------------------------------------
M
S
H
Q
F
-
S
P
E
E
Q
A
V
L
R
I
V
-----------------------------
Q
A
N
L
P
D
S
L
--
T
P
Y
A
D
L
A
E
Q
A
G
M
-
T
E
A
Q
V
L
E
L
L
G
---
R
L
K
A
-
S
G
A
I
--------------------
R
R
F
G
A
S
I
K
H
Q
K
T
G
W
T
H
-------------------------------
N
A
M
V
A
W
K
V
T
P
D
Q
--
V
D
D
-
C
G
R
K
------
A
A
E
-
H
S
H
I
S
H
V
Y
Y
-
R
P
S
S
-----
A
------------
P
-----------
D
WPYEMY
T
-
M
I
H
------
G
R
S
-----
E
A
E
C
L
G
V
V
E
D
V
K
R
T
-----------------------------------------
T
S
L
K
-
E
H
A
I
L
R
S
L
K
E
L
K
K
--
T
S
M
-
T
Y
-
F
T
--------------------------------------------
28
Fugue
48.72
12%
-67
* C9 *
2Q7S
1
?
A:
[11-290]
------------------------------------------------
I
-
A
P
F
-
T
L
A
L
P
E
G
E
A
L
P
L
V
C
D
------
S
P
H
S
G
-
T
F
Y
----------
P
A
D
F
G
A
V
V
--
A
P
E
R
L
R
G
G
--
E
D
-
T
H
V
D
A
L
W
E
A
V
---
P
R
V
G
-
G
T
L
L
A
A
TFPRVYIDPNRMLDDIDP
A
Q
L
E
G
P
W
P
T
P
L
A
P
G
T
G
L
I
W
S
--
N
--
V
---
D
A
P
I
Y
D
R
K
L
T
V
A
E
V
Q
R
R
I
N
R
Y
Y
R
P
Y
H
A
A
L
T
--
E
A
V
-
E
G
A
Y
------
Q
R
F
G
A
V
W
H
L
N
L
H
S
M
P
N
N
A
-----
Y
------------
E
R
L
KIQSPRPLA
D
------
F
-
V
L
G
DRDGT-
T
C
E
-----
P
G
L
V
D
L
V
E
R
E
L
R
E
K
-
G
Y
T
V
A
R
----------
N
D
P
----
Y
K
G
Q
L
I
-
A
Q
-
I
-
G
R
P
A
E
R
R
N
S
L
Q
I
E
I
R
R
P
L
------------
Y
M
E
E
--
G
T
R
E
-
R
N
E
-
G
F
A
T
L
Q
R
D
L
T
L
---------
L
T
L
R
I
A
E
Y
V
R
R
G
V
36
Fugue
46.77
10%
-100
* C8 *
1KZF
-
ESAI_PANSE
A:
[1-210]
--------------------------------------------------
M
L
E
-
L
F
D
V
S
Y
E
E
L
Q
T
T
F
S
D
------
R
L
G
W
E
V
I
C
S
----------
Q
G
M
E
S
D
E
F
--
D
G
P
G
T
----------------------------
R
Y
I
L
------------------
G
I
C
E
G
Q
L
V
C
S
V
R
F
T
S
L
D
R
P
N
--
M
--
I
---
T
H
T
F
Q
------
H
C
F
S
D
V
T
L
P
A
Y
G
T
E
S
S
R
F
F
VD
K
A
R
-
A
R
A
L
LGEHYP
I
S
Q
-
V
L
F
L
A
M
V
N
W
-
A
Q
N
N
-----
A
------------
Y
-----------
G
------
N
-
I
Y
T
------
I
V
S
-----
R
A
M
L
K
I
L
T
R
S
-----
G
W
Q
I
K
V
----------
I
K
E
A
F
L
-
T
-------------
E
K
E
R
I
Y
L
L
T
L
P
A
G
Q
D
D
K
Q
Q
L
G
--
G
D
V
-
V
S
-
R
T
--
G
C
P
P
-
V
A
V
-
T
T
W
P
L
T
L
P
V
------------------------
22
PsiBlast_PDB
40.84
19%
-108
- C10 -
1M3I
-
TACY_CLOPE
A:
[128-223]
----------------------------------------------------------------------------------------------------------------------
P
I
N
I
N
I
D
L
P
---
G
L
K
G
E
N
S
I
K
V
D
------------------
D
P
T
Y
G
K
V
S
G
A
I
D
E
L
V
S
K
W
N
E
--
K
--
Y
---
S
S
T
H
T
------
L
P
A
R
T
Q
Y
S
E
S
M
V
Y
S
K
S
Q
I
S
--
S
A
L
N
V
N
A
K
------
V
L
E
-
N
S
L
G
V
D
F
N
A
-
V
A
N
N
-----
E
------------
K
-----------
K
------
V
-
M
I
-----------------------------------------------------------------------------------------------------------------------------------------------
24
PsiBlast_PDB
39.77
19%
-100
- C10 -
1PFO
-
TACY_CLOPE
A:
[128-223]
----------------------------------------------------------------------------------------------------------------------
P
I
N
I
N
I
D
L
P
---
G
L
K
G
E
N
S
I
K
V
D
------------------
D
P
T
Y
G
K
V
S
G
A
I
D
E
L
V
S
K
W
N
E
--
K
--
Y
---
S
S
T
H
T
------
L
P
A
R
T
Q
Y
S
E
S
M
V
Y
S
K
S
Q
I
S
--
S
A
L
N
V
N
A
K
------
V
L
E
-
N
S
L
G
V
D
F
N
A
-
V
A
N
N
-----
E
------------
K
-----------
K
------
V
-
M
I
-----------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
39.01
17%
-74
- C2 -
4LDV
13
ARFA_ARATH
A:
[16-356]
S
D
A
L
C
R
E
L
W
H
A
C
A
GPL
V
T
L
P
R
EG
E
R
V
Y
Y
F
P
E
G
H
M
E
Q
L
E
ASMHQGLEQ
Q
M
-
P
S
F
N
L
P
S
K
I
L
C
K
V
I
N
I
Q
R
R
A
ETD
E
V
Y
A
Q
I
T
L
L
P
E
LDQSEPTSPD
A
P
V
Q
E
T
V
H
--
S
F
C
K
T
L
T
A
--
S
D
-
T
S
T
H
G
G
F
S
V
L
---
R
R
H
A
-
D
D
C
L
--------------------
P
P
L
D
M
S
Q
Q
P
P
W
Q
E
L
V
A
T
-
D
L
--
H
--
N
---
S
E
W
H
F
------
R
H
I
F
R
G
Q
P
R
R
H
L
L
T
-
T
G
W
S
--
V
F
V
-
S
S
K
K
------
L
V
A
-
G
D
A
F
I
F
L
R
G
----
E
-----
N
------------
E
-----------
E
------
L
-
R
V
G
V
RRHMP
S
S
V
-----
I
S
S
H
S
M
H
I
G
V
L
A
T
A
-
A
H
A
I
T
T
G
T
I
F
S
V
F
Y
K
P
R
T
S
R
S
E
F
I
V
S
V
N
R
-
Y
L
-
E
-
A
K
T
Q
K
L
S
V
G
M
R
F
K
M
R
F
K
R
F
S
G
T
I
--
V
G
V
-
Q
E
-
N
K
--
S
S
V
W
-
H
D
S
-
E
W
R
S
L
K
V
Q
W
D
E
PSSVFRPER
V
S
P
W
E
L
E
P
L
N---
18
PsiBlast_PDB
38.88
26%
-90
- C7 -
4Q7M
-
Y288_THEMA
B:
[365-420]
---------------------------------------------------------------------------------------------------------------
D
--
K
K
-
K
P
V
L
K
D
I
T
F
H
---
I
K
P
G
-
Q
K
V
A
L
V
------------------
G
P
T
G
S
G
K
T
T
I
V
N
L
L
M
R
F
Y
D
V
--
D
--
R
---
G
Q
I
L
V
------
D
G
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
38.57
13%
-58
- C9 -
1JWQ
1
?
A:
[71-176]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
-
A
N
V
F
V
S
I
H
A
-
N
S
S
G
SSA
S
N
G
------------
T
-----------
E
------
T
Y
Y
Q
R
------
S
A
S
-----
K
A
F
A
N
V
M
H
K
Y
F
A
P
A
T
G
L
T
D
R
--------------------
G
I
R
Y
-
G
N
-
F
H
V
I
R
E
T
T
M
P
A
V
L
L
E
V
G
-------
Y
--
L
S
N
-
A
---
K
--
E
E
A
T
L
F
D
E
D
F
Q
N
R
V
A
Q
G
I
A
D
---------
G
I
T
E
Y
L
-------
17
PsiBlast_PDB
38.21
26%
-92
- C7 -
4Q7L
-
Y288_THEMA
A:
[15-67]
---------------------------------------------------------------------------------------------------------------
D
--
K
K
-
K
P
V
L
K
D
I
T
F
H
---
I
K
P
G
-
Q
K
V
A
L
V
------------------
G
P
T
G
S
G
K
T
T
I
V
N
L
L
M
R
F
Y
D
V
--
D
--
R
---
G
Q
I
L
V
------
D
G
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
37.56
18%
-16
- C9 -
2Q7S
1
?
A:
[164-259]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
A
V
W
H
L
N
L
H
S
-
M
P
N
N
-----
A
Y
E
R
L
KIQSPRPL
A
-----------
D
------
F
-
V
L
G
------
D
R
D
GTTCE
P
G
L
V
D
L
V
E
R
E
L
R
E
K
-
G
Y
T
V
A
R
----------
N
---
D
P
-
Y
K
G
-
Q
L
I
A
Q
-
I
-
G
R
P
A
E
R
R
N
S
L
Q
I
E
I
R
R
P
L
Y
M
E
E
--------------------------------------------------------
15
PsiBlast_PDB
37.28
26%
-96
- C7 -
4Q4A
-
Y288_THEMA
B:
[365-417]
---------------------------------------------------------------------------------------------------------------
D
--
K
K
-
K
P
V
L
K
D
I
T
F
H
---
I
K
P
G
-
Q
K
V
A
L
V
------------------
G
P
T
G
S
G
K
T
T
I
V
N
L
L
M
R
F
Y
D
V
--
D
--
R
---
G
Q
I
L
V
------
D
G
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
36.83
28%
-94
- C6 -
2AHN
-
TLP_PRUAV
A:
[152-207]
--------------------------------------------------------
S
V
V
A
C
L
S
A
C
V
K
F
G
------
T
P
Q
Y
C
C
T
P
-----------
P
Q
N
T
P
E
T
C
PP
T
N
Y
S
E
I
F
H
--
N
A
-
C
P
D
A
Y
S
Y
A
Y
D
---
D
K
R
G
-
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
36.62
15%
-55
- C9 -
3CZX
1
?
A:
[68-177]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
G
-
S
D
V
A
I
E
F
H
T
-
N
A
A
A
NKT
A
T
G
------------
I
-----------
E
------
A
-
L
S
T
------
P
K
N
-----
K
R
W
C
Q
V
L
G
K
A
V
A
K
K
T
G
W
K
L
R
G
----------
E
D
---
G
-
F
K
P
D
N
A
-
G
Q
H
S
-
R
L
A
Y
A
Q
A
G
G
I
V
F
E
P
F
-------
F
--
I
S
N
-
D
---
T
--
D
L
A
L
-
F
K
T
-
T
K
W
G
I
C
R
A
I
A
D
---------
A
I
A
M
E
L
-------
16
PsiBlast_PDB
36.14
26%
-87
- C7 -
4Q4H
-
Y288_THEMA
B:
[365-417]
---------------------------------------------------------------------------------------------------------------
D
--
K
K
-
K
P
V
L
K
D
I
T
F
H
---
I
K
P
G
-
Q
K
V
A
L
V
------------------
G
P
T
G
S
G
K
T
T
I
V
N
L
L
M
R
F
Y
D
V
--
D
--
R
---
G
Q
I
L
V
------
D
G
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_PDB
35.74
19%
-92
- C10 -
1M3J
-
TACY_CLOPE
A:
[128-223]
----------------------------------------------------------------------------------------------------------------------
P
I
N
I
N
I
D
L
P
---
G
L
K
G
E
N
S
I
K
V
D
------------------
D
P
T
Y
G
K
V
S
G
A
I
D
E
L
V
S
K
W
N
E
--
K
--
Y
---
S
S
T
H
T
------
L
P
A
R
T
Q
Y
S
E
S
M
V
Y
S
K
S
Q
I
S
--
S
A
L
N
V
N
A
K
------
V
L
E
-
N
S
L
G
V
D
F
N
A
-
V
A
N
N
-----
E
------------
K
-----------
K
------
V
-
M
I
-----------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
35.69
26%
-88
- C7 -
3QF4
-
Y288_THEMA
B:
[365-417]
---------------------------------------------------------------------------------------------------------------
D
--
K
K
-
K
P
V
L
K
D
I
T
F
H
---
I
K
P
G
-
Q
K
V
A
L
V
------------------
G
P
T
G
S
G
K
T
T
I
V
N
L
L
M
R
F
Y
D
V
--
D
--
R
---
G
Q
I
L
V
------
D
G
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------