@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu18669: (2016-06-30 )
MKALIFLSSLTAIGSSILGRWLGMLDDSYAVGDAWFIGVLAGLISLLILIDSQTMTKNYIVSLSTILGILGVGFIYFPAAFINILLSITLDKQKKEDLHVR
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30....----...--.40........50.-------------.......60........70.....--------.------------..80----....---...------------.-----90........100-------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
A
L
I
F
L
S
S
L
T
A
I
G
S
S
I
L
G
R
W
L
G
MLDDSYAV
G
D
A
W
----
F
I
G
--
V
L
A
G
L
I
S
L
L
I
L
IDS-------------QTM
T
K
N
Y
I
V
S
L
S
T
I
L
G
I
L
G
V
G
F
I
Y
--------
F
------------
P
A
A
F
----
I
N
I
L
---
L
S
I
------------
T
-----LDKQKKEDLHVR--------------------------------------------------------------
1
PsiBlast_PDB
84.23
25%
-209
- C9 -
5EWJ
1
?
B:
[174-254]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
D
M
S
L
D
D
G
D
S
K
----
I
Q
N
--
Q
L
K
K
L
Q
S
P
I
I
L
L
Y
C
-------------
T
K
E
E
A
T
Y
I
F
E
V
A
N
S
V
G
L
T
G
Y
G
Y
T
W
--------
I
V
P
SLVAGDTDTV
P
A
E
F
----
P
T
G
L
---
I
S
V
------------
S
-----
Y
D
E
-----------------------------------------------------------------------
3
PsiBlast_PDB
82.80
25%
-205
- C9 -
5EWM
-
?
B:
[174-254]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
D
M
S
L
D
D
G
D
S
K
----
I
Q
N
--
Q
L
K
K
L
Q
S
P
I
I
L
L
Y
C
-------------
T
K
E
E
A
T
Y
I
F
E
V
A
N
S
V
G
L
T
G
Y
G
Y
T
W
--------
I
V
P
SLVAGDTDTV
P
A
E
F
----
P
T
G
L
---
I
S
V
------------
S
-----
Y
D
E
-----------------------------------------------------------------------
2
PsiBlast_PDB
82.29
25%
-211
- C9 -
5EWL
1
?
B:
[174-254]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
D
M
S
L
D
D
G
D
S
K
----
I
Q
N
--
Q
L
K
K
L
Q
S
P
I
I
L
L
Y
C
-------------
T
K
E
E
A
T
Y
I
F
E
V
A
N
S
V
G
L
T
G
Y
G
Y
T
W
--------
I
V
P
SLVAGDTDTV
P
A
E
F
----
P
T
G
L
---
I
S
V
------------
S
-----
Y
D
E
-----------------------------------------------------------------------
6
PsiBlast_PDB
72.38
28%
-164
- C9 -
4LDO
1
A:
[173-246]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
Y
A
A
D
E
V
W
----
V
V
G
M
G
I
V
M
S
L
I
V
L
A
I
V
F
G
N
V
L
V
I
T
A
I
A
K
FERL
Q
T
V
T
N
Y
F
I
T
S
L
A
C
A
D
L
V
M
G
L
A
V
V
P
--------
F
------------
G
A
A
H
----
I
-----------------------------------------------------------------------------------------------------
23
Fugue
72.33
20%
-209
- C8 -
5DOI
-
?
E:
[4-125]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
E
L
V
F
L
K
E
L
P
S
L
P
D
F
---------------
S
K
V
C
----
F
T
G
--
L
I
L
S
F
S
K
I
A
I
I
Q
D
S
--------------
T
G
E
A
E
L
F
L
D
I
S
V
F
K
A
I
T
G
I
G
V
L
K
--------
K
------------
Q
V
C
K
----
I
I
V
E
---
R
F
R
------------
I
-----
I
H
S
A
D
E
E
M
L
Q
Y
L
LIQKYKLS------------------------------------------------------
5
PsiBlast_PDB
71.91
28%
-165
- C9 -
4LDL
1
ADRB2_HUMAN
A:
[173-246]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
Y
A
A
D
E
V
W
----
V
V
G
M
G
I
V
M
S
L
I
V
L
A
I
V
F
G
N
V
L
V
I
T
A
I
A
K
FERL
Q
T
V
T
N
Y
F
I
T
S
L
A
C
A
D
L
V
M
G
L
A
V
V
P
--------
F
------------
G
A
A
H
----
I
-----------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
71.06
28%
-152
- C9 -
4QKX
1
ADRB2_HUMAN
A:
[173-246]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
Y
A
A
D
E
V
W
----
V
V
G
M
G
I
V
M
S
L
I
V
L
A
I
V
F
G
N
V
L
V
I
T
A
I
A
K
FERL
Q
T
V
T
N
Y
F
I
T
S
L
A
C
A
D
L
V
M
G
L
A
V
V
P
--------
F
------------
G
A
A
C
----
I
-----------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
70.76
28%
-165
- C9 -
4LDE
1
A:
[173-246]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
Y
A
A
D
E
V
W
----
V
V
G
M
G
I
V
M
S
L
I
V
L
A
I
V
F
G
N
V
L
V
I
T
A
I
A
K
FERL
Q
T
V
T
N
Y
F
I
T
S
L
A
C
A
D
L
V
M
G
L
A
V
V
P
--------
F
------------
G
A
A
H
----
I
-----------------------------------------------------------------------------------------------------
21
Fugue
68.05
19%
-82
- C9 -
1DVK
-
PRP18_YEAST
A:
[79-247]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR
I
Q
E
A
I
A
Q
DKTISVIIDPSQIGST
E
G
K
P
L
L
S
M
K
C
N
L
Y
I
H
E
I
L
S
R
W
K
A
S
L
E
A
---
Y
H
P
E
L
----
F
L
D
--
T
K
K
A
L
F
P
L
L
L
Q
L
R
R
-------------
N
Q
L
A
P
D
L
L
I
S
L
A
T
V
L
Y
H
L
Q
Q
P
K
E
I
--------
N
------------
L
A
V
Q
----
S
Y
M
K
---
L
S
I
G
N
V
A
W
PIGVA
N
I
M
-----
I
D
E
R
T
R
L
W
I
T
S
I
K
R
L
I
T
F
E
E
W
Y
T
S
N
H------------------------------------------------
24
Fugue
64.17
16%
-172
- C9 -
2JOV
-
?
A:
[1-85]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
H
K
D
I
F
T
S
V
V
R
V
R
G
S
K
K
Y
N
V
V
P
V
K
S
N
K
P
V
E
---------------
I
S
K
W
I
D
F
S
N
V
L
S
R
-------------
L
Y
V
G
V
P
T
K
S
G
N
V
V
C
K
N
I
M
N
T
G
--------------------------------
V
D
I
I
---
C
T
K
------------
N
-----
L
P
K
D
S
L
E
H
H
H
H
H
H-------------------------------------------------------------
20
Fugue
54.87
22%
-147
- C6 -
2HEQ
-
YORP_BACSU
A:
[1-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
G
----
D
P
L
P
K
Y
W
S
Y
P
V
G
L
A
V
E
I
-
N
N
N
A
R
Y
G
C
P
H
----
H
V
G
--
R
K
G
K
I
I
E
H
L
------------------
H
S
A
T
Y
D
Y
A
V
S
D
E
T
G
------
D
I
T
Y
--------
F
------------
K
E
H
E
----
L
T
P
L
K
GG
L
A
Y
------------
V
-----
L
E
H
H
H
H
H
H
------------------------------------------------------------------
27
Fugue
51.05
18%
-92
- C7 -
4WVM
-
STXA_SYNHO
A:
[4-703]
D
L
V
M
P
ALG
R
P
F
T
L
G
M
L
Y
D
ARREKLIS
S
N
A
Q
R
S
S
E
F
K
I
V
ASDS
T
E
S
K
S
S
A
M
DIE
A
S
L
G
V
S
F
L
G
GLVEVGGSAKYLNNTKKYQN
Q
S
R
V
T
L
K
Y
K
A
T
T
V
YKQFTHVVT
S
I
L
Y
G
A
N
A
F
F
V
S
D
S
D
KVD
I
Q
G
K
M
E
A
A
I
K
K
I
PTISILT
D
E
E
K
S
L
A
S
N
L
S
C
K
F
H
GDFLLESLPTT
F
E
D
A
V
K
T
Y
Q
T
LPTNSVPM
K
V
W
L
A
PNVSK
V
R
R
I
H
T
T
L
E
E
L
H
K
L
K
R
R
A
N
E
A
M
D
V
K
L
V
Q
R
I
P
L
I
H
D
K
I
S
N
F
Q
Q
I
F
Q
D
Y
M
L
T
V
Q
K
K
I
A
E
K
L
P
L
V
RE
Q
S
L
Q
K
I
I
D
D
R
A
Q
SPFS
N
E
K
V
S
K
W
L
D
A
V
E
R
E
I
A
V
L
K
S
C
A
G
M
V
EGTQ
A
K
F
V
SN
Q
T
E
L
D
R
E
V
L
VGKVK
H
A
V
C
F
I
F
TSVERND
P
Y
L
K
V
L
S
D
Y
W
E
SSTEDKWCFS
T
E
V
V
L
K
M
Q
Q
R
A
Q
T
F
C
D
H
V
N
D
F
E
KSRN
V
G
F
F
I
T
A
L
E
N
GKFQG
A
S
I
Y
Y
Y
K
EGSLATQDFT
F
P
R
M
P
FVQGYKK
R
S
D
L
L
W
Y
A
C
D
L
T
F
D
R
N
T
I
N
N
W
I
S
L
S
N
D
T
F
A
A
S
E
H
G
K
R
Q
N
Y
P
K
--
H
P
E
R
F
V
S
F
N
Q
V
L
C
N
-------------
E
G
L
M
G
K
H
Y
W
E
V
E
W
N
-
G
Y
I
D
V
G
I
A
Y
ISIPRKID
F
------------
A
S
A
F
GYNT
Y
S
W
V
---
L
S
Y
------------
N
PKI
G
Y
I
E
R
H
K
K
R
E
Y
N
V
R
A
PNPGFK
R
L
G
L
F
L
DWRYG
S
I
S
F
Y
A
V
S
SD
E
V
H
H
L
H
T
F
K
T
K
F
T
E
P
V
Y
P
A
F
S
IGPAG
N
H
G
T
L
R
L
L
15
HHSearch
49.64
33%
-276
- C9 -
2L8S
-
A:
[10-21]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
V
I
L
L
S
A
F
A
G
L
L
-----------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
47.04
11%
35
- C9 -
5HDA
2
ZMY11_HUMAN
A:
[3-123]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R
M
K
S
D
H
K
R
E
T
E
R
V
V
R
E
A
L
E
K
L
R
S
E
M
E
E
E
K
R
Q
A
V
N
K
A
V
A
N
M
Q
G
E
M
D
R
K
C
K
Q
V
K
E
K
C
K
E
E
----
F
V
E
--
E
I
K
K
L
A
T
Q
H
K
Q
L
I
S
-------------
Q
T
K
K
K
Q
W
C
Y
N
C
E
E
--------
E
A
M
--------
Y
------------
H
C
C
W
----
N
T
S
Y
---
C
S
I
------------
K
-----
C
Q
Q
E
H
W
H
A
E
H
K
R
TCRRK---------------------------------------------------------
9
PsiBlast_PDB
44.65
35%
-178
- C9 -
3AYG
-
?
A:
[392-422]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
F
W
A
L
V
V
L
V
G
G
S
M
I
G
Q
W
L
G
V
--
N
G
Y
-
L
G
N
E
W
----
F
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
43.16
35%
-170
- C9 -
3AYF
-
?
A:
[392-422]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
F
W
A
L
V
V
L
V
G
G
S
M
I
G
Q
W
L
G
V
--
N
G
Y
-
L
G
N
E
W
----
F
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
36.17
25%
-158
- C9 -
2MG1
-
?
A:
[1-27]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
K
L
----
F
I
M
--
I
V
G
G
L
V
G
L
R
I
V
F
A
V
-------------
L
S
I
K
K
K
-----------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
35.86
18%
-147
- C9 -
2KNC
-
A:
[962-978]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
I
P
I
W
W
V
L
V
G
V
L
G
G
L
L
-----------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
34.26
20%
-
- C3 -
2ZSK
-
?
A:
[1-10]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
I
G
I
I
G
G
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
32.33
46%
-
- C9 -
2M3E
-
A:
[1065-1077]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
L
Y
V
L
S
G
I
G
G
L
L
-----------------------------------------------------------------------------------------------------------------------------------------