@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu28480: (2016-07-15 )
MKKAERGASPKQIKPHRYYLLAVH
Atome Classification :
(16 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..--.......10---........20...------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MK--KAERGASPK---QIKPHRYYLLAVH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
67.96
25%
-124
- C6 -
2E74
9
PETD_MASLA
B:
[1-160]
------------------------------------------------------------------------------------------------------------------------------------------------------------MA
T
L
K
K
PDLSD
P
K
L
R
A
K
L
A
K
GMGHNYYGEPAWPNDLLY
V
F
P
V
V
I
M
G
T
F
A
C
I
V
A
L
S
V
L
D
P
A
M
V
G
E
--
P
A
D
P
F
A
T
P
L
---
E
I
L
P
E
W
Y
L
Y
P
V
F
Q
I
L
R
S
VPN
K
L
L
G
V
L
L
M
A
S
V
P
L
G
L
I
L
V
PFIENVNKFQNPFRR
P
V
A
T
T
I
F
L
F
G
T
L
V
T
I
W
L
G
I
G
A
T
FPLDKTLTLGLF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
64.63
46%
-85
* C9 *
3JAM
-
?
N:
[38-50]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
--
Y
A
R
K
G
L
T
P
S
---
Q
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
59.93
54%
142
- C5 -
2K3Y
-
A:
[118-133]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
S
A
P
A
TGG
V
-
K
P
H
R
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
57.89
50%
-31
- C1 -
1JHJ
-
APC10_HUMAN
A:
[5-16]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
T
P
P
G
A
D
P
K
---
Q
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
56.35
12%
-85
- C9 -
1ZA8
-
VHL1_VIOHE
A:
[1-31]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGESCAM
I
S
--
F
C
F
T
E
V
I
G
C
---
S
C
K
N
K
V
C
Y
L
N
S
I
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
53.32
29%
30
- C8 -
1M06
3
VGJ_BPAL3
J:
[1-24]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
--
K
A
R
R
S
P
S
R
R
---
K
G
A
R
L
W
Y
V
G
G
S
Q
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
50.51
50%
0
- C- -
3J7A
-
?
U:
[39-50]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
L
A
K
K
G
Q
T
P
S
---
Q
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
50.27
35%
178
- C10 -
2LUF
-
?
A:
[1-20]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
P
P
P
R
G
S
S
P
G
---
G
D
K
L
W
Q
I
Y
L
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
48.83
16%
-4
- C10 -
2X0O
5
?
A:
[7-601]
PH
P
A
E
I
V
A
HLQ
P
E
I
W
N
K
V
N
R
L
L
V
R
K
A
I
S
E
Y
A
H
E
WL
L
E
P
Q
R
LGPGETPG
F
E
R
F
R
L
T
L
A
DG
A
Q
Y
D
F
D
A
Q
V
M
A
MR
H
W
R
I
PPES
I
V
K
T
V
AG
V
P
A
P
LD
A
L
Q
F
V
I
E
I
R
DKLGLPVDR
L
P
I
Y
M
D
E
I
T
S
T
L
H
G
S
A
Y
K
H
G
RTTLG
A
A
A
L
A
R
AD
Y
Q
T
I
E
T
S
MIEGHPSFVANNGRLGFD
A
E
D
Y
H
G
YAPEAAT
P
V
R
L
M
W
L
A
V
H
KDN
A
H
F
S
C
L
SDMD
Y
D
S
L
M
S
E
E
LG
E
S
A
V
T
--
D
F
A
A
R
L
R
E
Q
---
G
L
H
P
A
D
Y
Y
F
M
P
A
H
P
W
Q
W
F
N
KLSLAF
A
P
Y
V
A
Q
RKIVCLGYGE
E
Q
Y
L
A
Q
QSIRTFFNISRPG
K
R
Y
V
K
T
S
L
SILNMGFMRGLS
P
Y
Y
M
A
G
T
P
A
I
N
E
Y
I
H
D
L
I
S
A
D
P
W
L
R
A
N
GFRILREV
A
S
M
G
F
R
N
Y
Y
Y
E
A
A
I
DTDTPYKKM
F
S
A
L
W
R
E
N
P
L
T
L
I
APG
Q
N
L
M
T
MAALLHVDPQGRA
L
L
P
E
L
I
Q
A
S
GLD
A
G
T
W
L
E
R
Y
V
D
A
Y
L
T
P
L
I
H
C
F
Y
A
HDLVFMPHGEN
V
I
L
V
I
Q
DGVPV
R
A
F
M
K
DIAEESSILNPQVRLPQAAQRLAADVPEAYKLLTIFVDVFEGY
F
R
H
L
T
Q
I
L
V
E
T
ELMP
E
H
D
F
W
R
L
V
A
G
R
I
A
A
Y
Q
Q
A
H
PQR
L
D
K
Y
R
R
Y
DLFAP
D
M
I
H
S
C
L
N
R
L
Q
L
AAPNLPNPIACF
18
Fugue
48.68
21%
127
- C7 -
1Q2J
-
CM3A_CONSE
A:
[2-22]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
CC
N
G
R
R
G
C
S
S
R
---
W
C
R
D
H
S
R
C
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
47.47
55%
24
- C3 -
2R18
-
A:
[126-136]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
R
G
P
S
P
G
---
Q
L
K
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
41.52
29%
-30
* C10 *
2PYQ
-
?
A:
[93-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
---
K
Y
R
A
V
V
Y
Y
M
L
T
K
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
35.51
12%
122
- C10 -
3PP4
1
P:
[2-25]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Y
--
N
C
E
P
A
N
P
S
E
---
K
N
S
P
S
T
Q
Y
C
Y
S
I
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
23.52
71%
-
- C4 -
4HD4
1
?
A:
[69-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
R
E
Y
L
L
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
21.43
57%
-
- C2 -
1BT3
1
PPO1_IPOBA
A:
[118-129]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
R
W
Y
L
Y
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
16.13
15%
156
- C10 -
2YQK
-
A:
[41-53]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
E
T
G
---
E
L
I
T
F
-
Y
Y
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------