@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu40380: (2016-08-07 )
MEWNKTKSIFIVAFLILDIFLGYQFFQKWQATGKEYEVIKNDVEHDMKADHITYEGLNKEATEGYRITANQKSFSKEEIEALKDQKPLMDMPSDDHKVTSLKMKFANPIALSKKDIEDDAQALVSSKIQDGEKYKLWKVDKSKKEIIFFQTYEGHYIYQKTDNPSNMIGQVVLHLNGKNEVVSYDQTTLETFKQIQKESLITEMDAVELLYYQNQLKEYSTVKSCKFGYVAQYPLTSTQVLAPVWRITVEYEKKVNGEKKTVQEYFTVNALESTILDTDQ
Atome Classification :
(19 SA)
--------------------------------------------------------------------.........10..--------..------....20......-..30.---------....--...--40........50........60.....-------...70........80........90.....---------------------....100..-.....110..-.....120.......130------.....----.-.----------.------------140--...-......150.-....-----...160-----.......170.-...--.-.-----.180.......190..-------.-.----....----------------------200.......210..---.----.---------------------..----.220.-..-..-..230.......240..-----.....250.......260-.........270.......280
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------MEWNK
T
K
S
I
F
I
V
A
--------
F
L
------
I
L
D
I
F
L
G
Y
Q
F
F
Q
-
K
W
Q
AT---------GK
E
Y
--
E
V
I
--
K
N
D
V
E
H
D
MKAD
H
I
T
YEGLNKEATE
G
Y
R
-------
I
TANQKSF
S
K
E
E
I
E
A
L
KDQKPLMD-MPSDD---------------------H
K
V
T
S
L
K
M
K-FANPIALSKK-D
I
E
D
D
A
Q
A
L
V
S
S
KIQDG-------E
K
Y
K
L
----
W
-
K
----------V------------D----KSK-
K
E
I
I
F
F
Q
T-Y-E
G
H
Y
-----
I
Y
QKTD-----
N
P
S
N
M
I
G
Q
V
V
L
-
H
LN--G-K-----N
E
V
VS
Y
D
Q
T
T
L
E
T
-
F
K
-------
Q
-
I
----
Q
K
E
S
----------------------
L
I
T
E
M
D
A
V
E
L
L
Y
Y
Q
N
---
Q
----
L
---------------------
K
E
----
Y
S
T
V
K-SC-KF-
G
Y
V
A
QYPLTS
T
Q
V
L
A
P
V
-----
W
R
I
T
V
E
Y
EKKVNG
E
K
K
---
T
V
Q
E
Y
F
T
V
N
A
L
E
S
T
ILDTDQ
8
HHSearch
93.55
100%
-73
- C4 -
2O3O
1
YYCI_BACSU
A:
[14-252]
---------------------------------------------------------------------------------------------------------------------------------------
K
N
D
V
E
H
D
M
K
A
D
H
I
T
Y
E
G
L
N
K
E
A
T
E
G
Y
R
-------
I
T
A
N
Q
K
S
F
S
K
E
E
I
E
A
L
K
D
Q
K
P
L
M
D
-
M
P
S
D
D
---------------------
H
K
V
T
S
L
K
M
K
-
F
A
N
P
I
A
L
S
K
K
-
D
I
E
D
D
A
Q
A
L
V
S
S
K
I
Q
D
G
-------
E
K
Y
K
L
----
W
-
K
----------
V
------------
D
----
K
S
K
-
K
E
I
I
F
F
Q
T
-
Y
-
E
G
H
Y
-----
I
Y
Q
K
T
D
-----
N
P
S
N
M
I
G
Q
V
V
L
-
H
L
N
--
G
-
K
-----
N
E
V
V
S
Y
D
Q
T
T
L
E
T
-
F
K
-------
Q
-
I
----
Q
K
E
S
----------------------
L
I
T
E
M
D
A
V
E
L
L
Y
Y
Q
N
---
Q
----
L
---------------------
K
E
----
Y
S
T
V
K
-
S
C
-
K
F
-
G
Y
V
A
Q
Y
P
L
T
S
T
Q
V
L
A
P
V
-----
W
R
I
T
V
E
Y
E
K
----
E
K
K
---
T
V
Q
E
Y
F
T
V
N
A
L
E
S
T
I
L
D
T
--
1
PsiBlast_PDB
92.61
97%
-73
- C4 -
2O3O
1
YYCI_BACSU
A:
[8-252]
-----------------------------------------------------------------------------------------------------------------------------
K
E
Y
--
E
V
I
--
K
N
D
V
E
H
D
M
K
A
D
H
I
T
Y
E
G
L
N
K
E
A
T
E
G
Y
R
-------
I
T
A
N
Q
K
S
F
S
K
E
E
I
E
A
L
K
D
Q
K
P
L
M
D
-
M
P
S
D
D
---------------------
H
K
V
T
S
L
K
M
K
-
F
A
N
P
I
A
L
S
K
K
-
D
I
E
D
D
A
Q
A
L
V
S
S
K
I
Q
D
G
-------
E
K
Y
K
L
----
W
-
K
----------
V
------------
D
----
K
S
K
-
K
E
I
I
F
F
Q
T
-
Y
-
E
G
H
Y
-----
I
Y
Q
K
T
D
-----
N
P
S
N
M
I
G
Q
V
V
L
-
H
L
N
--
G
-
K
-----
N
E
V
V
S
Y
D
Q
T
T
L
E
T
-
F
K
-------
Q
-
I
----
Q
K
E
S
----------------------
L
I
T
E
M
D
A
V
E
L
L
Y
Y
Q
N
---
Q
----
L
---------------------
K
E
----
Y
S
T
V
K
-
S
C
-
K
F
-
G
Y
V
A
Q
Y
P
L
T
S
T
Q
V
L
A
P
V
-----
W
R
I
T
V
E
Y
E
K
----
E
K
K
---
T
V
Q
E
Y
F
T
V
N
A
L
E
S
T
I
L
D
T
--
15
HHSearch
49.13
17%
-112
- C4 -
2GU3
-
YPMB_BACSU
A:
[71-133]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
E
----------------------
G
I
S
E
D
K
A
A
K
I
I
K
D
E
G
-------------------------------
L
----
V
S
K
Q
K
-
E
V
-
H
L
-
A
R
E
G
-----
N
V
----
L
L
-----
W
E
V
T
Y
L
D
K
E
---
G
-
Q
Y
------
S
L
S
Y
V
D
F
T
T
G
K
I
L
K
N
--
12
HHSearch
37.79
15%
30
- C4 -
4K90
3
?
B:
[35-207]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
S
Y
V
E
V
A
T
Q
H
V
K
M
I
A
P
-
D
-------
A
T
F
R
V
----
V
-
D
----------
D
------------
H
Y
V
G
D
N
G
V
-
A
H
V
H
F
R
Q
T
-
A
-
N
G
L
D
-----
I
D
N
--------------
A
D
F
N
V
-
N
V
G
--
K
-
D
-----
G
K
V
F
S
Y
G
N
S
F
Y
T
G
-
Q
I
-------
P
-
S
S
A
A
L
T
K
R
D
----------------------
F
S
D
P
V
T
A
L
K
G
T
T
N
T
L
---
Q
----
L
PITVD
S
A
S
S
E
S
TKE
S
Y
V
F
K
GV
S
G
----
T
V
S
D
P
-
K
A
-
K
L
-
V
Y
F
V
K
D
----
D
G
T
L
A
L
A
-----
W
R
V
E
T
D
I
D
S
---
N
--
W
------
L
L
T
Y
I
D
A
K
S
G
E
E
I
H
---
3
PsiBlast_PDB
33.54
36%
-58
- C5 -
1YQ4
2
SDHA_CHICK
A:
[350-389]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
------------
D
----
V
T
K
-
E
P
I
P
V
L
P
T
-
V
-
H
---------
Y
N
M
G
G
-----
I
P
T
N
Y
K
G
Q
V
I
T
-
H
V
N
--
G
-
E
-----
D
K
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
33.19
36%
-57
* C5 *
2WQY
4
SDHA_CHICK
A:
[350-389]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
------------
D
----
V
T
K
-
E
P
I
P
V
L
P
T
-
V
-
H
---------
Y
N
M
G
G
-----
I
P
T
N
Y
K
G
Q
V
I
T
-
H
V
N
--
G
-
E
-----
D
K
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
32.81
12%
33
- C4 -
3NQZ
-
?
A:
[38-175]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
L
V
V
----
L
-
K
----------
E
------------
F
TS--
N
N
G
E
V
T
R
R
Y
Q
Q
T
-
Y
-
Q
G
I
P
-----
V
I
G
--------------
D
T
V
S
L
-
T
F
N
----
N
-----
G
M
L
K
K
A
H
G
A
A
V
Y
N
-
I
D
-------
E
-
D
L
S--
D
V
S
A
----------------------
K
L
T
K
K
D
A
I
L
K
G
S
K
T
G
---
I
A
A
K
S
V
---------------------
G
L
----
K
K
H
N
E
-
Q
S
-
R
L
-
A
I
W
V
D
D
----
Q
N
K
A
H
L
V
-----
Y
E
V
S
Y
V
T
Y
G
K
S
P
S
--
R
------
P
Y
L
I
I
D
A
N
T
G
E
V
L
L
S
Y
-
13
HHSearch
31.56
12%
57
- C4 -
5BOI
2
?
A:
[83-227]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
L
N
-
D
A
M
N
K
A
T
K
F
L
K
D
H
R
F
---------
E
S
L
V
M
----
A
-
E
----------
S
------------
A
Q
Y
--
D
N
M
-
G
V
F
T
F
V
E
Q
T
E
-
S
G
V
R
-----
I
Y
P
--------------
D
S
V
K
M
-
K
M
S
--
L
E
D
-----
G
S
V
I
G
F
S
A
K
D
F
L
L
K
H
R
-------
T
-
R
D---
I
P
K
P
----------------------
K
I
S
K
E
Q
A
K
T
K
L
N
S
N
V
--------------------------------------
K
V
M
-
E
E
-
R
L
-
A
I
I
T
N
D
L
----
N
E
E
V
L
C
-----
Y
E
F
L
G
T
I
K
N
---
D
--
T
------
Y
R
I
F
I
N
A
D
T
G
F
E
E
K
V
--
6
PsiBlast_PDB
30.99
36%
-57
- C5 -
2H89
3
SDHA_CHICK
A:
[350-389]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
------------
D
----
V
T
K
-
E
P
I
P
V
L
P
T
-
V
-
H
---------
Y
N
M
G
G
-----
I
P
T
N
Y
K
G
Q
V
I
T
-
H
V
N
--
G
-
E
-----
D
K
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
30.37
14%
47
- C4 -
5COZ
1
?
A:
[163-357]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
A
E
-
E
A
E
E
L
A
V
K
T
A
K
E
L
E
I
N
V
C
E
K
N
---
E
L
Y
V
L
----
D
-
D
----------
K
NTLIFPEDDTD
K
Q
----
N
D
T
-
Y
V
F
F
M
F
P
D
-
V
-
Y
G
I
P
-----
Y
S
R
C
P
E
NEALT
G
Y
A
N
Q
E
N
H
L
V
I
-
A
M
D
--
E
-
K
------
G
I
S
F
L
D
I
P
P
L
Y
D
-
W
V
-------
E
-
T
T---
E
T
G
E
----------------------
I
L
H
P
S
S
I
L
S
K
E
V
D
K
L
K
K
Y
V
----
T
---------------------
S
G
----
D
I
E
V
S
-
E
I
-
S
L
-
E
Y
M
L
F
A
D
K
N
E
T
Y
D
I
K
P
V
-----
W
V
V
Y
Y
Y
Q
N
Q
L
V
T
G
E
N
S
Y
T
Q
K
M
A
L
Y
D
V
Y
D
A
Y
T
G
E
E
Y
R
I
--
2
PsiBlast_PDB
27.76
36%
-19
- C5 -
1YQ3
2
SDHA_CHICK
A:
[350-389]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
------------
D
----
V
T
K
-
E
P
I
P
V
L
P
T
-
V
-
H
---------
Y
N
M
G
G
-----
I
P
T
N
Y
K
G
Q
V
I
T
-
H
V
N
--
G
-
E
-----
D
K
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
27.13
14%
66
* C4 *
4EXR
2
?
A:
[75-170]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
M
-
K
I
D
--
A
N
T
-----
K
D
V
L
E
D
K
T
E
K
L
D
S
-
E
D
LNGVARK
E
K
L
----
D
L
N
D
----------------------
I
M
T
P
Q
Q
A
M
E
I
A
L
K
E
Q
------------------------------------
N
G
I
V
K
-
E
W
-
S
L
-
D
K
D
---------
L
D
V
T
F
-----
Y
K
I
R
I
D
K
D
K
---
N
--
E
------
Y
D
I
K
V
D
S
K
K
G
T
V
L
K
V
--
27
Fugue
25.66
19%
33
- C3 -
4LK4
-
?
A:
[32-372]
---------------------------------------------------------------RIING
S
N
A
N
S
A
E
W
P
S
I
V
A
--------
L
V
K
R
GADA
Y
Q
G
Q
F
C
G
G
S
F
L
G
G
R
Y
V
L
T
A
AHCFDSRS
A
A
S
V
--
D
V
I
I
G
A
Y
D
L
N
N
S
S
Q
G
E
R
I
A
A
Q
K
I
Y
R
H
L
S
Y
S
P
S
NLLND
I
A
I
V
E
L
A
Q
T
S
S
L
P
A
I
T
L
A
G
P
A
T
R
T
S
L
-
P
A
L
T
P
---------------------
L
T
V
A
G
W
G
I
T
-
F
-
T
P
I
-
L
Q
E
V
-
D
V
D
L
V
S
Q
S
L
C
Q
I
V
M
Q
H
G
ISSDPNS
T
N
F
C
A
----
A
-
R
LTQGDAG
G
P
I
V
------------
V
----
K
T
G
-
R
E
Q
L
G
I
V
S
-
W
G
D
E
Q
G
-----
T
Y
G
V
Y
T
-----
N
V
S
Y
F
R
D
W
I
T
K
-
H
T
N
--
Q
----------
L
S
Y
D
Q
V
A
N
L
G
-
I
R
PL
G
----
K
-
V
----
S
Q
S
F
----------------------
T
Y
T
N
L
D
A
N
A
L
T
Y
T
G
N
---
T
----
F
---------------------
S
S
LPAD
F
S
V
L
S
D
G
C
-
S
T
K
V
T
L
A
T
G
E
S
C
S
V
E
V
A
V
D
A
Q
H
Y
R
Q
Y
Q
Y
D
F
E
L
I
F
S
Y
A
G
G
S
K
---
R
A
T
S
R
I
Q
L
D
T
----------
24
Fugue
18.79
13%
62
* C3 *
1DE6
3
RHAA_ECOLI
A:
[10-425]
T
Q
L
E
Q
A
W
E
L
A
K
Q
R
F
A
A
V
GID
V
E
E
A
L
R
Q
L
D
R
L
P
V
S
M
H
CWQGDDVSGFENPEGSLTGG
I
Q
A
T
G
NYPGKAR
N
A
S
E
L
R
A
D
L
E
Q
A
M
R
L
I
P
G
P
K
R
L
N
------
L
H
A
I
Y
L
E
S
D
T
P
V
-
S
R
D
Q
I
---------
K
P
E
H
F
K
N
W
V
--
E
W
A
K
A
N
Q
L
G
L
D
F
N
P
S
C
F
S
H
P
L
S
A
D
G
F
T
-------
L
S
H
A
D
D
S
I
R
Q
F
W
I
D
H
C
K
A
S
R
R
V
S
A
-
Y
F
G
E
Q
LG
T
P
S
V
M
N
I
W
I
PDGMKDITVD
R
L
A
P
R
Q
R
L
L
-
A
A
L
D
E
V
I
S
E
K
-
L
N
P
A
H
H
I
D
A
V
E
S
K
L
F
G
I
GA-----
E
S
Y
T
V
GS
N
E
F
-
Y
----------
M
------------
G
----
Y
A
T
-
S
R
Q
T
A
L
C
L
-
D
-
A
G
H
F
HPTEV
I
S
D
K
I
S
-----
A
A
M
L
Y
V
P
Q
L
L
L
-
H
V
S
--
R
-
P
V
RWDS
D
H
V
V
L
L
D
D
E
T
Q
A
I
-
A
S
-------
E
-
I
----
V
R
H
D
LFDR
V
H
I
G
L
D
F
F
D
ASIN
R
I
A
A
W
V
I
G
T
R
N
M
K
K
A
L
L
R
A
L
---
L
----
E
---------------------
P
T
----
A
E
L
R
K
-
L
E
-
A
P
-
G
D
Y
T
A
R
L
A
L
L
E
E
Q
K
S
L
P
-----
W
Q
A
V
W
E
M
Y
C
Q
R
H
D
T
P
A
---
G
S
E
W
L
E
S
V
R
A
Y
E
K
E
I
L
S
R
R
-
20
Fugue
17.60
23%
60
- C2 -
4FGI
-
?
B:
[23-169]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
T
Q
L
E
I
V
P
Q
F
G
S
P
---
N
M
F
G
G
E
D
---------------------
E
H
V
R
V
----
M
F
S
N
E
---
D
P
N
-
D
D
N
P
D
A
F
P
E
P
P
V
Y
L
A
D
R
-------
D
S
G
N
D
----
C
-
R
----------
I
------------
E
----
D
G
G
------
I
W
S
-
R
-
G
G
V
F
-----
L
S
Q
D
-------------
G
R
R
V
L
M
H
E
F
S
G
S
-
S
-----
A
E
L
V
S
Y
D
S
A
T
C
K
V
-
V
H
-------
R
-
E
----
D
I
S
G
----------------------
Q
R
W
A
V
D
K
D
G
L
R
L
G
Q
K
---
C
----
S
---------------------
G
E
------
S
V
D
-
S
C
A
K
I
-
V
K
R
S
L
A
P
F
C
Q
T
--------------------------------------------------
23
Fugue
15.80
11%
29
- C1 -
2MCD
-
?
A:
[1-114]
----------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
G
S
H
H
H
H
-------
H
H
G
S
V
S
F
G
A
P
S
P
L
S
S
E
S
E
D
E
I
N
Y
M
-
T
P
P
E
Q
---------------------
E
A
Q
P
G
A
L
A
A
-
L
H
A
E
G
P
L
A
G
L
P
V
T
R
S
D
A
R
V
L
I
F
N
E
W
E
E
R
-------
K
K
S
E
P
----
W
L
R
----------
L
------------
D
----
M
S
D
-
K
A
I
F
R
R
Y
P
-
H
-
L
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
7.65
36%
0
- C- -
2H88
3
SDHA_CHICK
A:
[350-389]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
------------
D
----
V
T
K
-
E
P
I
P
V
L
P
T
-
V
-
H
---------
Y
N
M
G
G
-----
I
P
T
N
Y
K
G
Q
V
I
T
-
H
V
N
--
G
-
E
-----
D
K
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
7.65
36%
0
- C- -
2FBW
3
SDHA_CHICK
A:
[350-389]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
------------
D
----
V
T
K
-
E
P
I
P
V
L
P
T
-
V
-
H
---------
Y
N
M
G
G
-----
I
P
T
N
Y
K
G
Q
V
I
T
-
H
V
N
--
G
-
E
-----
D
K
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
6.14
13%
35
- C4 -
2KGY
-
?
A:
[33-95]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
T
----------------------
G
P
D
A
D
R
A
R
A
A
A
V
Q
A
V
-------------------------------
P
----
G
G
T
A
G
-
E
V
-
E
T
-
E
T
G
E
---------
G
A
A
A
-----
Y
G
V
L
V
T
R
P
D
---
G
T
-
R
------
V
E
V
H
L
D
R
-
D
F
R
V
L
D
T
E
-