@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 102_tII_WHEAT: (2014-05-01 )
ATACDATQLTPCAGAIIGSSPPTAACCSRLKEQQPCLCTYARDPNLQRYVNSPNGKKAMAACKVPVPSC
Atome Classification :
(20 SA)
---------------------------------------------------------------....--.--..--..---10...-----..--.-------------..20-.--.-----.......30.-----------.------.-.....40..------..------------..-----..---50-------....-....60..--------....-------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------ATAC--D--AT--QL---TPCA
G
-----
A
I--I-------------GSS--P--P-----
T
A
A
C
C
S
R
L
K
E-----------Q------Q-P
C
L
C
T
YARD------P
N
------------
L
Q
-----
R
Y
---VN-------SPNG-
K
K
A
M
A
A
CK--------VPVP-------SC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
94.65
54%
-114
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
---
T
V
C
T
G
-----
A
I
--
A
-------------
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
------
Q
-
G
C
F
C
Q
F
A
K
D
------
P
R
------------
Y
G
-----
R
Y
---
V
N
-------
S
P
N
A
-
R
K
A
V
S
S
C
G
--------
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
94.35
54%
-114
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
----------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
---
T
V
C
T
G
-----
A
I
--
A
-------------
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
------
Q
-
G
C
F
C
Q
F
A
K
D
------
P
R
------------
Y
G
-----
R
Y
---
V
N
-------
S
P
N
A
-
R
K
A
V
S
S
C
G
--------
I
A
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
94.25
53%
-114
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
L
---
T
V
C
T
G
-----
A
I
--
A
-------------
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
------
Q
-
G
C
F
C
Q
F
A
K
D
------
P
R
------------
Y
G
-----
R
Y
---
V
N
-------
S
P
N
A
-
R
K
A
V
S
S
C
G
--------
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
87.07
42%
-111
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------
A
C
--
Q
--
A
S
--
Q
L
---
A
V
C
A
S
-----
A
I
--
L
-------------
S
G
A
--
K
--
P
-----
S
G
E
C
C
G
N
L
R
A
-----------
Q
------
Q
-
G
C
F
C
Q
Y
A
K
D
------
P
T
------------
Y
G
-----
Q
Y
---
I
R
-------
S
P
H
A
-
R
D
T
L
T
S
C
G
--------
L
A
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
70.00
26%
-82
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------A
I
D
L
C
GM
S
--
Q
D
--
E
L
---
N
E
C
K
P
-----
A
V
--
S
-------------
K
E
N
--
P
TS
P
-----
S
Q
P
C
C
T
A
L
Q
H
A----------
D
------
F
-
A
C
L
C
G
Y
K
N
S
------
P
W
------------
L
G
-----
S
F
G--
V
D
-------
P
E
L
A
-
S
A
L
P
K
Q
C
G
--------
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
68.59
27%
-59
* C3 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------
A
I
S
C
--
G
Q
V
A
S
--
A
I
---
A
P
C
I
S
-----
Y
A
--
R
-------------
G
Q
G
--
S
G-
P
-----
S
A
G
C
C
S
G
V
R
S
-----------
L
------
N
-
N
A
----
A
R
T
------
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG-
L
N
-------
A
G
N
A
-
A
S
I
P
S
K
C
G
--------
V
S
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
65.64
25%
-86
- C3 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
------------------------------------------------------------------------
Q
D
--
E
L
---
N
E
C
K
P
-----
A
V
--
S
-------------
K
E
N
PT
S
--
P
-----
S
Q
P
C
C
T
A
L
Q
H
-----------
A
------
D
F
A
C
L
C
G
Y
K
N
S
------
P
W
------------
L
G
-----
S
F
G--
V
D
-------
P
E
L
A
-
S
A
L
P
K
Q
C
G
--------
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
63.24
27%
-63
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[1-79]
---------------------------------------------------------------
M
I
T
C
--
G
--
Q
V
S
S
S
L
---
A
P
C
I
P
-----
Y
V
--
R
-------------
G
G
G
--
A
--
V
-----
P
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
------
A
-
A
C
N
C
--
L
K
Q
------
L
S
-------------
A
-----
S
V
PG-
V
N
-------
P
N
N
A
-
A
A
L
P
G
K
C
G
--------
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
62.53
25%
-65
- C3 -
1T12
-
NLTP1_TOBAC
A:
[1-78]
---------------------------------------------------------------
A
I
T
C
--
G
--
Q
V
T
S
N
L
---
A
P
C
L
A
-----
Y
L
--
R
-------------
N
T
G
-----
P
-----
L
G
R
C
C
G
G
V
K
A
L
V
N
S
A
RT
T
E
D
R
Q
------
I
-
A
C
T
C
--
L
K
S
------
A
A
-------------
G
-----
A
I
SG-
I
N
-------
L
G
K
A
-
A
G
L
P
S
T
C
G
--------
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
62.44
27%
-65
- C3 -
1AFH
-
NLTP_MAIZE
A:
[1-80]
---------------------------------------------------------------
A
I
S
C
--
G
--
Q
V
A
S
A
I
---
A
P
C
I
S
-----
Y
A
--
R
-------------
G
Q
G
--
S
G-
P
-----
S
A
G
C
C
S
G
V
R
S
L
N
N
A
A
RT
T
A
D
R
R
------
A
-
A
C
N
C
--
L
K
N
------
A
A
-------------
A
-----
G
V
SG-
L
N
-------
A
G
N
A
-
A
S
I
P
S
K
C
G
--------
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
61.38
23%
-63
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
------------------------------------------------------------------------
Q
G
--
N
L
---
A
Q
C
I
G
-----
F
L
--
Q
-------------
K
G
G
--
V
--
V
-----
P
P
S
C
C
T
G
V
K
N
I
L
NSSRTTADR
R
------
A
-
V
C
S
C
L
K
A
A
A
------
G
A
------------
V
R
------
G
---
I
N
-------
P
N
N
A
-
E
A
L
P
G
K
C
G
--------
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
61.38
25%
-55
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
------------------------------------------------------------------------
D
S
--
L
V
---
R
P
C
L
S
-----
Y
V
--
Q
-------------
G
G
P
--
G
--
P
-----
S
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
------
S
-
A
C
N
C
L
K
G
I
A
------
R
G
------------
I
H
------
N
---
L
N
-------
E
D
N
A
-
R
S
I
P
P
K
C
G
--------
V
N
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
57.45
23%
-99
- C3 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
----------------------------------------------------------------------------
D
L
---
S
I
C
L
N
-----
I
L
GG
S
-------------
L
G
T
-----------
V
D
D
C
C
A
L
I
G
G
-----------
L
G
D
I
E
A
-
I
-
V
C
L
C
I
Q
L
R
A
--------------------
L
G
-----
I
----
L
N
-------
L
N
R
N
L
Q
L
I
L
N
S
C
G
--------
R
S
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
55.61
17%
-70
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
--
E
--
A
E
--
M
L
---
N
H
C
G
M
-----
Y
L
--
M
KNLGERSQVSPR
M
R
E
E
--
D
--
H
-----
K
Q
L
C
C
M
Q
L
K
N
L----------
D
------
E
-
K
C
M
C
P
A
I
M
M
M
L
N
EPM
W
I
------------
R
M
-----
R
D
---
Q
V
-------
M
S
M
A
-
H
N
L
P
I
E
C
N
--------
L
M
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
53.41
11%
-70
- C3 -
2KBR
1
USH1C_HUMAN
A:
[1-80]
---------------------------------------------------------------
M
D
R
K
--
V
--
A
R
--
E
F
---
R
H
K
V
D
-----
F
L
--
I
-------------
E
N
D
--
A
--
E
-----
K
D
Y
L
Y
D
V
L
R
M
-----------
Y
------
H
-
Q
T
M
D
V
A
V
L
V
------
G
D
------------
L
K
-----
L
V
---
I
N
-------
E
P
S
R
-
L
P
L
F
D
A
I
R
--------
P
L
I
P
-------
L
K
H
Q
V
E
Y
D
Q
L
T
PR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
51.44
11%
-103
- C3 -
1VD2
-
KPCI_HUMAN
A:
[11-99]
---------------------------------------------------------------
G
P
L
G
--
S
--
Q
V
--
R
V
---
K
A
Y
Y
R
G
D
I
M
I
T
H
--
F
-------------
E
P
S
--
I
--
S
-----
F
E
G
L
C
N
E
V
R
D
-----------
M
C
SFDN
E
Q
-
L
F
T
M
K
W
I
D
E
------
E
G
------------
D
P
-----
C
T
---
V
S
-------
S
Q
L
E
L
E
E
A
F
R
L
Y
E
L
N
KDSEL
L
I
H
V
F
-------
P
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
51.14
19%
-57
- C3 -
3OB4
-
?
A:
[427-488]
---------------------------------------------------------------------------------------------------------------------
H
-----
Q
E
R
C
C
N
E
L
N
E
-----------
F
EN----
N
Q
R
C
M
C
E
A
L
Q
Q
------
I
M
------------
E
N
-----
Q
S
DRL
Q
G
RQ
Q
E
Q
Q
F
K
R
E
L
-
R
N
L
P
Q
Q
C
G
--------
L
R
A
P
Q------
R
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
SP3
49.96
13%
-70
- C3 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
--
T
--
A
G
--
T
L
T
L
L
P
V
A
L
R
-----
A
P
--
V
-------------
T
A
G
--
Q
--
L
-----
A
V
E
N
G
H
Y
V
V
E
-----------
T
------
L
-
A
R
A
C
D
G
C
L
N
------
G
E
------------
F
A
-----
A
L
---
I
T
-------
G
P
V
H
-
K
G
V
I
N
D
A
G
--------
I
P
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
32
SP3
46.39
15%
-58
- C3 -
1KNG
-
CYCY_BRADU
A:
[50-193]
---------------------------------------------------RPAPQ
T
A
L
P
P
LE
G
L
Q
A
--
D
--
N
V
--
Q
V
---
P
G
L
D
P
-----
A
A
--
F
-------------
K
G
---
K
--
V
S
L
V
N
V
W
A
S
W
C
V
P
C
H
D
-----------
E
------
A
-
P
L
L
T
E
L
G
K
D
------
K
R
------------
F
Q
L
V
G
I
N
Y
K
---
D
A
-------
A
D
N
A
-
R
R
F
L
G
R
Y
G
--------
N
P
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
44.51
10%
-65
- C3 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------PR
G
S
A
L
--
S
--
D
T
--
E
R
---
A
Q
-
L
D
-----
V
M
--
K
-------------
L
L
N
--
V
--
S
-----
L
H
E
M
S
R
K
I
S
R
-----------
S
------
R
-
H
C
I
R
V
Y
L
K
D
------
P
V
SYGTSKRAP---
R
R
-----
K
A
---
L
S
-------
V
R
D
E
-
R
N
V
I
R
A
A
S
--------
N
S
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ATACDATQLTPCA
G
A
IIGSSPP
T
A
A
C
C
S
R
L
K
EQQP
C
L
C
T
YARDP
N
L
Q
R
Y
VNSPNG
K
K
A
M
A
A
CKVPVPSC
42
97.38
100%
-107
- C- -
M042
-
A:
[1-80]
A
T
A
C
D
A
T
Q
L
T
P
C
A
G
A
I
I
G
S
S
P
P
T
A
A
C
C
S
R
L
K
E
Q
Q
P
C
L
C
T
Y
A
R
D
P
N
L
Q
R
Y
V
N
S
P
N
G
K
K
A
M
A
A
C
K
V
P
V
P
S
C
43
96.28
100%
-108
- C- -
M043
-
A:
[1-80]
A
T
A
C
D
A
T
Q
L
T
P
C
A
G
A
I
I
G
S
S
P
P
T
A
A
C
C
S
R
L
K
E
Q
Q
P
C
L
C
T
Y
A
R
D
P
N
L
Q
R
Y
V
N
S
P
N
G
K
K
A
M
A
A
C
K
V
P
V
P
S
C