@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 163_tV_WHEAT: (2014-05-02 )
AGECGRASADRVALRLAPCVSAADDPQSTPTSSCCSAVHAIGQSPSCLCAVMLSGTARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP
Atome Classification :
(20 SA)
-----------------------------....-----.....10-------...--..----..--------..20-------------.-----.-----------------...------------.------.---------------.-----------------30........40..--------.--------..------...50.-------------..-----..---.---------.---------.------------60.---------.---.-....---..70-......--------.-.-----------.80--.-----.....----..90.----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------AGEC-----GRASA
D
--------
R
V
A
--
L
R
----LA--------PCVS-------------A-----A-----------------DDP------------Q------S---------------T-----------------
P
T
S
S
C
C
S
A
V
H
A
IGQ--------S--------
P
S
------
C
L
C
A
V
M
-------------LS-----GT---A---------R---------A------------A-G---------I---K-P
E
V
A
---
I
TI--PKRCNM--------A-D-----------RPV--G-----YKCGD----YTL-P----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
84.53
31%
-122
- C4 -
1T12
-
NLTP1_TOBAC
A:
[3-78]
-----------------------------------------
T
C
G
--------
Q
V
T
--
S
N
----
L
A
--------
P
C
L
A
-------------
Y
-----
L
-----------------
R
N
T
------------
G
----------------------------------------
P
L
G
R
C
C
G
G
V
K
A
L
V
N
--------
S
A
RT
T
E
D
R
Q
I
A
------
C
T
C
--
L
-------------
K
S
------
A
---
A
---------
G
---------
A
------------
I
S
G
---------
I
---
N
-
L
G
K
A
---
A
G
L
--
P
S
T
C
G
V
--------
N
-
I
-----------
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
83.50
24%
-116
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------
A
I
S
C
G
--------
Q
V
A
--
S
A
----
I
A
--------
P
C
I
S
-------------
Y
-----
A
-----------------
R
G
Q
------------
G
------
S
---------------
G
-----------------
P
S
A
G
C
C
S
G
V
R
S
L
N
N
--------
A
--------
A
R
T
T
A
D
R
R
A
A
C
N
C
L
-------------
K
N
-----
A
A
---
A
---------
G
---------
V
------------
S
-
G
---------
L
---
N
-
A
G
N
A
---
A
S
I
--
P
S
K
C
G
V
--------
S
I
P
-----------
Y
T
I
--
S
TS---
T
D
C
S
R
----
V
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
74.68
32%
-105
- C4 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
-----------------------------------------
S
C
G
--------
Q
V
A
--
S
A
----
I
A
--------
P
C
I
S
-------------
Y
-----
A
-----------------
R
G
Q
------------
G
------
S
---------------
G
-----------------
P
S
A
G
C
C
S
G
V
R
S
L
N
N
A
-------
A
RT
T
A
D
R
R
-
A
A
------
C
N
C
--
L
-------------
K
N
------
A
---
A
---------
A
---------
G
------------
V
S
G
---------
L
---
N
-
A
G
N
A
---
A
S
I
--
P
S
K
C
G
V
--------
S
-
I
-----------
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
66.92
21%
-114
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
-----------------------------------------
T
C
G
--------
Q
V
S
--
S
S
----
L
A
--------
P
C
I
P
-------------
Y
-----
V
-----------------
R
G
G
-------------------
G
---------------
A
-----------------
V
P
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
--------
A
A
------
C
N
C
--
L
-------------
K
------
Q
L
---
S
---------
A
---------
S
------------
V
P
G
---------
V
---
N
-
P
N
N
A
---
A
A
L
--
P
G
K
C
G
V
--------
S
-
I
-----------
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
63.88
24%
-95
- C4 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-------------------------------
M
C
-----
Y
P
G
Q
A
F
QVPAL
P
A
C
R
P
L
--
L
R
----
L
Q
--------
C
N
G
S
-------------------------------------
Q
V
P
-------------------
E
---------------
A
-----------------
V
L
R
D
C
C
Q
Q
L
A
H
I
----------
S
--------
E
W
------
C
R
C
G
A
L
Y
S
M
L
D
S
M
Y
K
E
HGA
F
P
-----
R
C
---
R
---------
R
---------
E
------------
V
-
V
---------
K
---
L
-
T
A
A
S
---
I
T
A
----
V
C
R
L
P
I
V
VDASG
D
-
G
-----------
A
Y
V
--
C
-----
K
D
V
A
A
----
Y
P
D
-
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
63.73
19%
-135
* C4 *
1SM7
-
?
A:
[14-100]
----------------------------------------------------------
H
----
L
R
--------
A
C
Q
Q
-------------
W
-----
I
-----------------
R
Q
Q
------------
L
------
A
G
S
P
F
S
E
NQWGPQQGP
S
-----------------
L
R
E
Q
C
C
N
E
L
Y
Q
E
----------
D
--------
Q
V
------
C
V
C
P
T
L
-------------
K
Q
-----
A
A
---
K
---------
S
---------
V
RVQGQ-------
H
-
G
PFQST----
R
---
I
-
Y
Q
I
A
---
K
N
L
--
P
N
V
C
N
M
--------
K
-
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
62.90
27%
-85
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------
A
I
D
L
C
G
--------
M
S
Q
--
D
E
----
L
N
--------
E
C
K
P
-------------
A
-----
V
-----------------
S
K
E
N-----------
P
------
T
---------------
S
-----------------
P
S
Q
P
C
C
T
A
L
Q
H
A
----------
D
--------
F
A
------
C
L
C
G
Y
K
-------------
N
S
-----
P
W
---
L
---------
G
---------
S
------------
F
-
G
---------
V
---
D
-
P
E
L
A
---
S
A
L
--
P
K
Q
C
G
L
--------
A
-
N
-----------
A
P
----------
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
61.95
14%
-103
- C4 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
--------------------GPMRRERGR
Q
G
D
S
-----
S
S
C
E
R
Q
--------
V
D
R
--
V
N
----
L
K
--------
P
C
E
Q
-------------
H
-----
I
M
Q
R
I
MGEQEQYDSYDIR
S
T
R
------------
S
------
S
---------------
D
-----------------
Q
Q
Q
R
C
C
D
E
L
N
E
M
E
N
--------
T
--------
Q
G
------
C
M
C
E
A
L
-------------
Q
Q
-----
I
M
---
E
N
Q
CDRLQDR
Q
---------
M
------------
V
-
Q
---------
Q
---
F
-
K
R
E
L
---
M
S
L
--
P
Q
Q
C
N
F
--------
R
-
A
-----------
P
Q
----------
R
C
D
L
----
D
V
S
-
G
GRCS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
61.41
27%
-89
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-75]
--------------------------------------
A
I
D
L
C
G
--------
M
S
Q
--
D
E
----
L
N
--------
E
C
K
P
-------------
A
-----
V
-----------------
S
K
E
------------
N
P-----
T
---------------
S
-----------------
P
S
Q
P
C
C
T
A
L
Q
H
A
----------
D
--------
F
A
------
C
L
C
G
Y
K
-------------
N
S
-----
P
W
---
L
---------
G
---------
S
------------
F
-
G
---------
V
---
D
-
P
E
L
A
---
S
A
L
--
P
K
Q
C
G
L
--------
A
-
N
-----------
A
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
59.85
22%
-109
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[2-78]
-----------------------------------------
D
C
G
--------
H
V
D
--
S
L
----
V
R
--------
P
C
L
S
-------------
Y
-----
V
-----------------
Q
G
G
-------------------
P
---------------
G
-----------------
P
S
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
--------
S
A
------
C
N
C
L
K
G
-------------
I
A
--------------------
R
---------
G
------------
I
H
N
---------
L
---
N
-
E
D
N
A
---
R
S
I
--
P
P
K
C
G
V
--------
N
-
L
-----------
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
58.56
16%
-115
- C4 -
1W2Q
-
CONG_ARAHY
A:
[16-112]
------------------------------------------
C
E
--------
R
Q
V
D
R
V
N
----
L
K
--------
P
C
E
Q
-------------
H
-----
I
-----------------
M
Q
R
------------
I
------
M
---------------
G
EQEQYDSYDIRSTR
S
S
D
Q
Q
Q
R
C
C
D
E
L
N
E
M
E
N
--------
T
--------
Q
G
------
C
M
C
E
A
L
-------------
Q
Q
-----
I
M
---
E
---------
N
---------
Q
CDRL--------
Q
-
D
RQ-------
M
V
Q
Q
F
-
K
R
E
L
---
M
S
L
--
P
Q
Q
C
N
F
--------
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
57.22
19%
-115
- C4 -
1BEA
-
ITRF_MAIZE
A:
[16-109]
----------------------------------------------------------
P
----
L
P
--------
S
C
R
W
-------------
Y
-----
V
-----------------
T
S
R
------------
T
CGIG--
P
---------------
R
LP
W
P
E
------------
L
K
R
R
C
C
R
E
L
A
D
I
----------
P
--------
A
Y
------
C
R
C
T
A
L
-------------
S
I
-----
L
M
---
D
---------
G
A
I
P
P
G
PDAQ
L
E
G
R
---------
L
-
E
D
LPGCP
R
E
-
V
---
Q
-
R
G
F
A
---
A
T
L
VT
E
A
E
C
N
L
--------
A
-
T
-----------
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
SP3
56.35
24%
-50
- C5 -
1EFP
-
ETFA_PARDE
A:
[1-183]
--A
V
L
L
L
G
EVTNGALN
R
D
A
T
A
K
A
V
A
A
V
KA
L
G
D
V
T
V
L
C
A
G
-
A
S
A
K
--------
A
A
A
--
E
E
----
A
A
--------
K
I
A
G
-------------
V
A
K
V
L
V
A
-----------------
E
D
A
LY----------
G
------
H
---------------
R
-----------------
L
A
E
P
T
A
A
L
I
V
G
L
A
G
--------
D
--------
Y
S
---------
H
I
A
-------------
A
P
-----
A
T
---
T
---------
D
---------
A
------------
K
-
N
---------
V
---
M
-
P
R
V
A
---
A
L
L
---
D
V
M
V
L
--------
S
-
D
VSAILDAD
T
F
E
R
P
I
YA
G
N
A
I
Q
V
V
K
S
K
D
A
K
K
V
F
T
I
-
R
TASFDAAGEGGTA
P
V
T
E
T
A
A
A
A
D
PGL
S
S
W
V
A
D
E
V
A
E----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
55.88
28%
-103
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[2-78]
-----------------------------------------
T
C
G
--------
Q
V
Q
--
G
N
----
L
A
--------
Q
C
I
G
-------------
F
-----
L
-----------------
Q
K
G
-------------------
G
---------------
V
-----------------
V
P
P
S
C
C
T
G
V
K
N
I
L
N
SSRTTADR
R
--------
A
V
------
C
S
C
L
----------------
K
-----
A
A
---
A
---------
G
---------
A
------------
V
R
G
---------
I
---
N
-
P
N
N
A
---
E
A
L
--
P
G
K
C
G
V
--------
N
-
I
-----------
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
55.34
18%
-124
- C4 -
1HYP
-
HPSE_SOYBN
A:
[10-79]
----------------------------------------------------------
D
----
L
S
--------
I
C
L
N
-------------
I
-----
L
-----------------
G
G
S
------------
L
------
G
---------------
T
------------------
V
D
D
C
C
A
L
I
G
G
L
G
D
I
E
------
A
--------
I
V
------
C
L
C
I
Q
L
-------------
R
A
--------------------
L
---------
G
------------
I
-----------
L
---
N
-
L
N
R
N
---
L
Q
L
I
-
L
N
S
C
G
R
--------
S
-------------
Y
P
S
--
N
-----
A
T
C
P
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
54.78
24%
-172
- C4 -
2DS2
-
?
B:
[7-63]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
Q
C
C
N
Q
L
R
Q
V
----------
D
--------
R
P
------
C
V
C
P
V
L
-------------
R
Q
-----
A
A
---
Q
Q
V
L
Q
-----
R
Q
I-------
I
------------
Q
-
G
P
Q
Q
L
R
----
R
---
L
-
F
D
A
A
---
R
N
L
--
P
N
I
C
N
I
--------
P
-
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
54.72
17%
-101
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------------------------P
Y
G
R
G
-----
R
T
E
S
G
C
--------
Y
Q
Q
--
M
E
E
A
EM
L
N
--------
H
C
G
M
-------------
Y
-----
L
-----------------
M
K
N
LGERSQVSPR
M
R
E
------
E
---------------
D
-----------------
H
K
Q
L
C
C
M
Q
L
K
N
L
----------
D
--------
E
K
------
C
M
C
P
A
I
-------------
M
M
M
L
N
EP
M
W
---
I
---------
R
---------
M
------------
R
-
D
---------
Q
---
V
-
M
S
M
A
---
H
N
L
--
P
I
E
C
N
L
--------
M
-
S
-----------
Q
-----------
P
C
Q
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
53.97
20%
-115
- C4 -
1HSS
-
IAA1_WHEAT
A:
[16-106]
----------------------------------------------------------
A
----
L
P
--------
A
C
R
P
-------------
L
-----
L
-----------------
R
L
Q
------------
C
N
GSQ--
V
P
E
-------------
A
-----------------
V
L
R
D
C
C
Q
Q
L
A
H
I
----------
S
--------
E
W
------
C
R
C
G
A
L
-------------
Y
S
-----
M
L
D
S
M
Y
---------
K
---------
E
------------
H
--GAFPRCR
R
E
V
---
V
-
K
L
T
A
---
A
S
I
--
T
A
V
C
R
L
--------
P
-
I
-----------
V
V
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
53.91
18%
-110
- C4 -
1B1U
-
IAAT_ELECO
A:
[16-110]
----------------------------------------------------------
P
----
L
D
--------
S
C
R
W
-------------
Y
-----
V
-----------------
S
T
R
------------
T
CGVGPR
L
A
T
Q
------------
E
-----------------
M
K
A
R
C
C
R
Q
L
E
A
I
----------
P
--------
A
Y
------
C
R
C
E
A
V
-------------
R
I
-----
L
M
---
D
G
V
V
------
T
---------
P
SG
Q
H
E
G
RLLQDL
P
-
G
CP
R
Q
-----
V
Q
--
R
A
F
A
P
K
---
L
V
T
--
E
V
E
C
N
L
--------
A
-
T
-----------
I
H
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
SP3
53.74
21%
-93
- C6 -
1D0V
2
COBT_SALTY
A:
[4-349]
L
H
A
L
L
R
D
IPAPD
A
E
A
M
A
R
T
Q
Q
H
I
D
G
LLKP
P
G
S
L
-----
G
R
--
L
E
--------
T
L
A
--
V
Q
----
L
A
G
MPGLNGT
P
Q
V
G
E
K
A
V
L
V
M
C
A
D
H
GV
W
-----
D
-----------------
E
G
V
------------
A
------
V
---------------
S
-----------------
P
K
I
V
T
A
I
Q
A
A
N
M
T
R
--------
G
--------
T
T
------
G
V
C
V
-----------------------
L
---
A
---------
A
---------
Q
------------
A
-
G
---------
A
---
K
-
V
H
V
I
D
VG
I
D
A
--
E
P
I
P
G
V
--------
V
-
N
-----------
M
R
V
--
A
-----
R
G
C
G
N
----
I
A
V
G
P
AMS
R
L
Q
A
E
A
L
L
L
E
V
S
R
Y
A
C
D
L
A
Q
R
GVT
L
F
G
V
G
E
L
G
M
A
N
T
T
P
A
A
A
M
V
S
V
F
T
GSDAKEVVGIGANLPPSR
I
D
N
K
V
D
V
V
R
R
A
I
A
I
N
QPNPRD
G
I
D
V
L
S
K
VGG
F
D
L
V
G
M
T
G
V
M
L
G
A
A
R
C
G
L
P
V
L
L
D
G
F
L
S
Y
S
A
A
L
A
A
C
Q
I
APAVRPY
L
I
P
S
H
FSAEKG
A
R
I
A
L
A
H
L
SMEPYLHMAMRLGEG
S
G
A
A
L
A
M
P
I
V
E
A
A
C
A
M
F
H
NMGELAASNIVLP
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AGECGRASA
D
R
V
A
L
R
LAPCVSAADDPQST
P
T
S
S
C
C
S
A
V
H
A
IGQS
P
S
C
L
C
A
V
M
LSGTARAAGIKP
E
V
A
I
TIPKRCNMADRPVGYKCGDYTLP
46
93.27
100%
-141
- C- -
M046
-
A:
[1-156]
A
G
E
C
G
R
A
S
A
D
R
V
A
L
R
L
A
P
C
V
S
A
A
D
D
P
Q
S
T
P
T
S
S
C
C
S
A
V
H
A
I
G
Q
S
P
S
C
L
C
A
V
M
L
S
G
T
A
R
A
A
G
I
K
P
E
V
A
I
T
I
P
K
R
C
N
M
A
D
R
P
V
G
Y
K
C
G
D
Y
T
L
P
43
60.32
100%
-29
- C- -
M043
-
A:
[3-139]
A
G
E
C
G
R
A
S
A
D
R
V
A
L
R
L
A
P
C
V
S
A
A
D
D
P
Q
S
T
P
T
S
S
C
C
S
A
V
H
A
I
G
Q
S
P
S
C
L
C
A
V
M
L
S
G
T
A
R
A
A
G
I
K
P
E
V
A
I
T
I
P
K
R
C
N
M
A
D
R
P
V
G
Y
K
C
G
D
Y
T
L
P
44
38.07
100%
-0
- C- -
M044
-
A:
[6-134]
A
G
E
C
G
R
A
S
A
D
R
V
A
L
R
L
A
P
C
V
S
A
A
D
D
P
Q
S
T
P
T
S
S
C
C
S
A
V
H
A
I
G
Q
S
P
S
C
L
C
A
V
M
L
S
G
T
A
R
A
A
G
I
K
P
E
V
A
I
T
I
P
K
R
C
N
M
A
D
R
P
V
G
Y
K
C
G
D
Y
T
L
P