@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
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Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
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Contacts with Ligands
Show alignment :
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All alignments
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Column output:
Score:
Atome Rank Value
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Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
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3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
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Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
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Pfam class
EC Number
Taxonomy
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Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 169_tV_ORYSA: (2014-05-02 )
AEGAGECGRASADRVALRLAPCVSAADDPQSAPSSSCCSAVHTIGQSPSCLCAVMLSNTARVAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP
Atome Classification :
(20 SA)
----------------------------------------------------------------------..----.....-----..10..--------...--...20....-----.-----------------...--30-----.---------------.-----------------..------------.....40....--.--------.--------.--.------50...-------...-----.---.60-----.-------------.-.---------.---.-.-..70..-.-----------......--------80.-----------.-.--.--.-----....90---....------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------AE----GAGEC-----GRASA
D
--------
R
V
A
--
L
R
LAPCVSA-----A-----------------DDP--Q------S---------------A-----------------P
S
------------
S
S
C
C
S
A
V
H
T
IG--Q--------S--------
P
--
S
------
C
L
C
A
V
-------
M
LS-----N---TAR-----V-------------A-G---------I---K-P-
E
V
A
-
I
T-I-----------PKRCNM--------A-D-----------R-P--V--G-----YKCGD----YTLP------------------------------------------------------------------------------------------------------------
17
HHSearch
79.96
27%
-114
- C5 -
1T12
-
NLTP1_TOBAC
A:
[3-89]
-----------------------------------------------------------------------------------------
T
C
G
--------
Q
V
T
--
S
N
L
A
P
C
L
A
Y
-----
L
-----------------
R
N
T
--
G
----------------------------------------
P
L
------------
G
R
C
C
G
G
V
K
A
L
V
--
N
--------
S
A
RT
T
E
D
R
Q
I
--
A
------
C
T
C
---------
L
K
S
-----
A
----
A
G
-----
A
-------------
I
S
G
---------
I
---
N
-
L
-
G
K
A
-
A
G
-
L
-----------
P
S
T
C
G
V
--------
N
-
I
-----------
P
Y
K
IS
P
--
S
-----
T
D
C
S
K
--------------------------------------------------------------------------------------------------------------------
31
SP3
76.41
25%
-114
- C5 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------
A
I
S
C
G
--------
Q
V
A
--
S
A
I
A
P
C
I
S
Y
-----
A
-----------------
R
G
Q
--
G
------
S
---------------
G
-----------------
P
S
------------
A
G
C
C
S
G
V
R
S
L
N
--
N
--------
A
--------
A
--
R
T
T
A
D
R
R
A
A
C
N
C
-------
L
K
N
-----
A
---
A
A
G
-----
V
-------------
S
-
G
---------
L
---
N
-
A
-
G
N
A
-
A
S
-
I
-----------
P
S
K
C
G
V
--------
S
I
P
-----------
Y
-
T
--
I
--
S
TS---
T
D
C
S
R
----
V
N
--------------------------------------------------------------------------------------------------------------
15
HHSearch
72.04
33%
-95
- C5 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
-----------------------------------------------------------------------------------------
S
C
G
--------
Q
V
A
--
S
A
I
A
P
C
I
S
Y
-----
A
-----------------
R
G
Q
--
G
------
S
---------------
G
-----------------
P
S
------------
A
G
C
C
S
G
V
R
S
L
N
--
N
A
-------
A
RT
T
A
D
R
R
-
A
--
A
------
C
N
C
---------
L
K
N
-----
A
----
A
A
-----
G
-------------
V
S
G
---------
L
---
N
-
A
-
G
N
A
-
A
S
-
I
-----------
P
S
K
C
G
V
--------
S
-
I
-----------
P
--------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
66.77
28%
-97
- C5 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-------------------------------------------------------------------------------
M
C
-----
Y
P
G
Q
A
F
QVPAL
P
A
C
R
P
L
--
L
R
L
Q
C
N
G
S
------------------------
Q
V
P
---------
E
---------------
A
-----------------
V
L
------------
R
D
C
C
Q
Q
L
A
H
I
------------
S
--------
E
--
W
------
C
R
C
G
A
-------
L
Y
S
-----
M
---
L
D
S
------
M
Y
K
E
HGAFPRCR
R
E
-
V
---------
V
---
K
-
L
-
T
A
A
S
I
T
-
A
-------------
V
C
R
L
P
I
V
VDASG
D
-
G
-----------
A
-
Y
--
V
--
C
-----
K
D
V
A
A
----
Y
P
D
A
------------------------------------------------------------------------------------------------------------
1
Fugue
66.76
31%
-86
- C5 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------
A
I
D
L
C
-----
G
M
S
-------------
Q
--
D
E
L
N
E
C
K
P
A
-----
V
-----------------
S
K
E
N-
P
------
T
---------------
S
-----------------
P
S
------------
Q
P
C
C
T
A
L
Q
H
A
------------
D
--------
F
--
A
------
C
L
C
G
Y
-------
K
N
S
-----
P
---
W
L
G
-----
S
-------------
F
-
G
---------
V
---
D
-
P
-
E
L
A
-
S
A
-
L
-----------
P
K
Q
C
G
L
--------
A
-
N
-----------
A
-
P
------------
T
C
----------------------------------------------------------------------------------------------------------------------
14
HHSearch
63.97
25%
-123
- C5 -
1SIY
-
NLTP1_VIGRR
A:
[2-88]
-----------------------------------------------------------------------------------------
T
C
G
--------
Q
V
Q
--
G
N
L
A
Q
C
I
G
F
-----
L
-----------------
Q
K
G
---------
G
---------------
V
-----------------
V
P
------------
P
S
C
C
T
G
V
K
N
I
L
--
N
SSRTTADR
R
--------
A
--
V
------
C
S
C
L
---------
K
A
---------
A
A
G
-----
A
-------------
V
R
G
---------
I
---
N
-
P
-
N
N
A
-
E
A
-
L
-----------
P
G
K
C
G
V
--------
N
-
I
-----------
P
Y
K
--
I
ST
S
-----
T
N
C
N
---------------------------------------------------------------------------------------------------------------------
16
HHSearch
63.70
22%
-108
- C5 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
-----------------------------------------------------------------------------------------
T
C
G
--------
Q
V
S
--
S
S
L
A
P
C
I
P
Y
-----
V
-----------------
R
G
G
---------
G
---------------
A
-----------------
V
P
------------
P
A
C
C
N
G
I
R
N
V
N
--
N
L
A
RT
T
P
D
R
Q
--------
A
--
A
------
C
N
C
---------
L
K
Q
---------
L
S
A
-----
S
-------------
V
P
G
---------
V
---
N
-
P
-
N
N
A
-
A
A
-
L
-----------
P
G
K
C
G
V
--------
S
-
I
-----------
P
--------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
63.39
14%
-98
- C5 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
----------------------------------------------------------------GPMRRE
R
G
----
R
Q
G
D
S
-----
S
S
C
E
R
Q
--------
V
D
R
--
V
N
L
K
P
C
E
Q
H
-----
I
M
Q
R
I
MGEQEQYDSYDIR
S
T
R
--
S
------
S
---------------
D
-----------------
Q
Q
------------
Q
R
C
C
D
E
L
N
E
M
E
--
N
--------
T
--------
Q
--
G
------
C
M
C
E
A
-------
L
Q
Q
-----
I
---
M
E
N
-----
Q
CDRLQDRQM----
V
-
Q
---------
Q
---
F
-
K
-
R
E
L
-
M
S
-
L
-----------
P
Q
Q
C
N
F
--------
R
-
A
-----------
P
-
Q
------------
R
C
D
L
----
D
V
S
G
GRCS--------------------------------------------------------------------------------------------------------
36
SP3
60.81
17%
-111
* C5 *
1HYP
-
?
?:
[6-80]
------------------------------------------------------------------------------
P
S
C
-----
P
-------------------
D
L
S
I
C
L
N
I
-----
L
-----------------
G
G
S
--
L
------
G
---------------
T
-----------------
V
-------------
D
D
C
C
A
L
I
G
G
L
G
D
I
E
--------
A
--------
I
--
V
------
C
L
C
-----------------
I
---
Q
L
R
-----
A
-------------
L
-
G
---------
I
L--
N
-
L
-
N
R
N
-
L
Q
L
I
-----------
L
N
S
C
G
---------
R
-
S
-----------
Y
-
P
--
S
--
N
-----
A
T
C
P
R
----
T
---------------------------------------------------------------------------------------------------------------
13
HHSearch
57.25
22%
-104
- C5 -
1BWO
2
NLTP1_WHEAT
A:
[2-78]
-----------------------------------------------------------------------------------------
D
C
G
--------
H
V
D
--
S
L
V
R
P
C
L
S
Y
-----
V
-----------------
Q
G
G
---------
P
---------------
G
-----------------
P
S
------------
G
Q
C
C
D
G
V
K
N
L
H
--
N
Q
ARS
Q
S
D
R
Q
--------
S
--
A
------
C
N
C
L
K
-------
G
I
A
-----
R
-----------
G
-------------
I
H
N
---------
L
---
N
-
E
-
D
N
A
-
R
S
-
I
-----------
P
P
K
C
G
V
--------
N
-
L
-----------
P
--------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
56.85
19%
-131
- C5 -
1SM7
-
?
A:
[14-100]
----------------------------------------------------------------------------------------------------------
H
L
R
A
C
Q
Q
W
-----
I
-----------------
R
Q
Q
--
L
------
A
G
S
P
F
S
E
NQWGPQQGP
S
-----------------
L
R
------------
E
Q
C
C
N
E
L
Y
Q
E
------------
D
--------
Q
--
V
------
C
V
C
P
T
-------
L
K
Q
-----
A
---
A
K
S
V
RVQG
Q
-------------
H
-
G
PFQST----
R
---
I
-
Y
-
Q
I
A
-
K
N
-
L
-----------
P
N
V
C
N
M
--------
K
-
Q
--------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
56.76
29%
-85
- C5 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
---------------------------------------------------------------------------------------
I
D
L
C
G
--------
M
S
Q
--
D
E
L
N
E
C
K
P
A
-----
V
-----------------
S
K
E
--
N
P-----
T
---------------
S
-----------------
P
S
------------
Q
P
C
C
T
A
L
Q
H
A
------------
D
--------
F
--
A
------
C
L
C
G
Y
-------
K
N
S
-----
P
---
W
L
G
-----
S
-------------
F
-
G
---------
V
---
D
-
P
-
E
L
A
-
S
A
-
L
-----------
P
K
Q
C
G
L
--------
A
-
N
-----------
A
-
P
------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
56.36
17%
-104
- C5 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------------------P
Y
G
R
G
R
----
T
E
S
G
C
-----
Y
Q
Q
M
E
E
--------
A
E
M
--
L
N
--
H
C
G
M
Y
-----
L
-----------------
M
K
N
--
L
------
G
---------------
E
-----------------
R
S
QVSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
N
L
------------
D
--------
E
--
K
------
C
M
C
P
A
-------
I
M
M
M
L
N
EP
M
---
W
I
R
-----
M
-------------
R
-
D
---------
Q
---
V
-
M
-
S
M
A
-
H
N
-
L
-----------
P
I
E
C
N
L
--------
M
-
S
-----------
Q
--------------
P
C
Q
M
--------------------------------------------------------------------------------------------------------------------
25
HHSearch
55.95
21%
-105
- C5 -
1HSS
-
IAA1_WHEAT
A:
[16-107]
----------------------------------------------------------------------------------------------------------
A
L
P
A
C
R
P
L
-----
L
-----------------
R
L
Q
--
C
N
GSQVP
E
---------------
A
-----------------
V
L
------------
R
D
C
C
Q
Q
L
A
H
I
------------
S
--------
E
--
W
------
C
R
C
G
A
-------
L
Y
S
-----
M
---
L
D
S
M
Y
K
--
E
-------------
H
--GAFPRCR
R
E
V
---
V
-
K
-
L
T
A
-
A
S
-
I
-----------
T
A
V
C
R
L
--------
P
-
I
-----------
V
-
V
--
D
--
A
------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
55.90
17%
-110
- C5 -
1W2Q
-
CONG_ARAHY
A:
[15-112]
-----------------------------------------------------------------------------------------
S
C
E
--------
R
Q
V
D
R
V
N
L
K
P
C
E
Q
H
-----
I
-----------------
M
Q
R
--
I
------
M
---------------
G
EQEQYDSYDIRSTR
S
S
D
Q
Q
------------
Q
R
C
C
D
E
L
N
E
M
E
--
N
--------
T
--------
Q
--
G
------
C
M
C
E
A
-------
L
Q
Q
-----
I
---
M
E
N
Q
CD--
R
L------------
Q
-
D
RQ-------
M
V
Q
Q
F
-
K
-
R
E
L
-
M
S
-
L
-----------
P
Q
Q
C
N
F
--------
R
----------------------------------------------------------------------------------------------------------------------------------------------------
37
SP3
55.79
22%
-49
* C6 *
1EFP
-
ETFA_PARDE
A:
[1-183]
----------------------------------------------A
V
L
L
L
G
EVTNGALN
R
D
A
T
A
K
A
V
A
A
V
K
----
A
L
G
D
V
T
V
L
C
A
G
-
A
S
A
K
--------
A
A
A
--
E
E
A
A
K
I
A
G
V
A
K
V
L
V
A
-----------------
E
D
A
LY
G
------
H
---------------
R
-----------------
L
A
------------
E
P
T
A
A
L
I
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L
A
--
G
--------
D
--------
Y
--
S
---------
H
I
-------
A
A
P
-----
A
---
T
T
D
-----
A
-------------
K
-
N
---------
V
---
M
-
P
-
R
V
A
-
A
L
-
L
------------
D
V
M
V
L
--------
S
-
D
VSAILDAD
T
F
E
R
-
P
--
I
YA
G
N
A
I
Q
V
V
K
S
K
D
A
K
K
V
F
T
I
R
TASFDAAGEGGTA
P
V
T
E
T
A
A
A
A
D
PGL
S
S
W
V
A
D
E
V
A
E------------------------------------------------------------------------
40
SP3
53.43
12%
-92
- C3 -
1GUY
1
MDH_CHLAA
A:
[1-306]
M
R
K
K
I
S
I
I
G
AG
F
V
G
S
T
T
A
H
W
L
A
A
K
EL
G
D
I
V
L
L
D
IVEG
V
P
Q
G
K
A
L
D
L
Y
E
A
SPIEG
F
D
V
R
V
T
G
T
NNYADTAN
S
D
V
I
V
V
T
S
G
A
L
-----
I
K
V
N
A
D
--------
I
T
R
--
A
C
I
S
Q
A
A
P
L
-----
S
-----------------
P
N
A
--
V
I
I
M
V--
N
---------------
N
-----------------
P
L
------------
D
A
M
T
Y
L
A
A
E
V
S
--
G
--------
F
--------
P
KE
R
------
V
I
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Q
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G
V
L
D
A
A
R
Y
R
T
-----
F
---
I
A
M
-----
E
-------------
A
-
G
---------
V
---
S
-
V
E
D
V
Q
-
A
M
-
L
M
G
G
H
GDE
M
V
P
L
P
R
F
S
T
I
--------
S
-
G
-----------
I
-
P
--
V
------------
S
----
E
F
I
A
P
D
R
L
A
Q
I
V
E
R
T
R
K
G
G
G
E
I
V
N
L
L
K
TGSAY
Y
A
P
A
A
A
T
A
Q
M
V
E
A
V
L
K
DKK
R
V
M
P
V
AAYLTGQYGLNDIY
F
G
V
P
V
ILGAGGVE
K
I
L
E
L
PLN
E
E
E
M
A
L
L
N
A
S
A
K
A
V
R
A
T
L
D
T
L
29
HHSearch
53.31
17%
-107
- C5 -
1B1U
-
IAAT_ELECO
A:
[16-110]
----------------------------------------------------------------------------------------------------------
P
L
D
S
C
R
W
Y
-----
V
-----------------
S
T
R
--
T
CGVGPR
L
A
T
Q
------------
E
-----------------
M
K
------------
A
R
C
C
R
Q
L
E
A
I
------------
P
--------
A
--
Y
------
C
R
C
E
A
-------
V
R
I
-----
L
M
D
G
V
V
T
-----
P
SG
Q
H
E
G
RLLQDL-
P
-
G
CP
R
Q
-----
V
Q
--
R
A
F
-
A
P
K
-
L
V
-
T
-----------
E
V
E
C
N
L
--------
A
-
T
-----------
I
-
H
--
G
---------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
52.51
19%
-121
- C5 -
1BEA
-
ITRF_MAIZE
A:
[16-109]
----------------------------------------------------------------------------------------------------------
P
L
P
S
C
R
W
Y
-----
V
-----------------
T
S
R
--
T
CGIG--
P
---------------
R
LP
W
P
E
------------
L
K
------------
R
R
C
C
R
E
L
A
D
I
------------
P
--------
A
--
Y
------
C
R
C
T
A
-------
L
S
I
L
M
D
--
G
---
A
I
P
-----
P
G
PDAQL
E
G
R
----
L
-
E
D
LPGCP
R
E
-
V
---
Q
-
R
-
G
F
A
-
A
T
-
L
VT---------
E
A
E
C
N
L
--------
A
-
T
-----------
I
--------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
52.49
16%
-122
- C5 -
1HYP
-
HPSE_SOYBN
A:
[10-79]
----------------------------------------------------------------------------------------------------------
D
L
S
I
C
L
N
I
-----
L
-----------------
G
G
S
--
L
------
G
---------------
T
------------------
V
------------
D
D
C
C
A
L
I
G
G
L
G
--
D
I
E
------
A
--------
I
--
V
------
C
L
C
I
Q
-------
L
R
A
-----------
L
-----
G
-------------
I
-----------
L
---
N
-
L
-
N
R
N
-
L
Q
-
L
I
----------
L
N
S
C
G
R
----------
S
-----------
Y
-
P
--
S
--
N
-----
A
T
C
P
R
--------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AEGAGECGRASA
D
R
V
A
L
R
LAPCVSAADDPQSAP
S
S
S
C
C
S
A
V
H
T
IGQS
P
S
C
L
C
A
V
M
LSNTARVAGIKP
E
V
A
I
TIPKRCNMADRPVGYKCGDYTLP
45
95.33
100%
-132
- C- -
M045
-
A:
[1-168]
A
E
G
A
G
E
C
G
R
A
S
A
D
R
V
A
L
R
L
A
P
C
V
S
A
A
D
D
P
Q
S
A
P
S
S
S
C
C
S
A
V
H
T
I
G
Q
S
P
S
C
L
C
A
V
M
L
S
N
T
A
R
V
A
G
I
K
P
E
V
A
I
T
I
P
K
R
C
N
M
A
D
R
P
V
G
Y
K
C
G
D
Y
T
L
P
47
89.11
100%
-118
- C- -
M047
-
A:
[1-168]
A
E
G
A
G
E
C
G
R
A
S
A
D
R
V
A
L
R
L
A
P
C
V
S
A
A
D
D
P
Q
S
A
P
S
S
S
C
C
S
A
V
H
T
I
G
Q
S
P
S
C
L
C
A
V
M
L
S
N
T
A
R
V
A
G
I
K
P
E
V
A
I
T
I
P
K
R
C
N
M
A
D
R
P
V
G
Y
K
C
G
D
Y
T
L
P
48
87.93
100%
-135
- C- -
M048
-
A:
[1-168]
A
E
G
A
G
E
C
G
R
A
S
A
D
R
V
A
L
R
L
A
P
C
V
S
A
A
D
D
P
Q
S
A
P
S
S
S
C
C
S
A
V
H
T
I
G
Q
S
P
S
C
L
C
A
V
M
L
S
N
T
A
R
V
A
G
I
K
P
E
V
A
I
T
I
P
K
R
C
N
M
A
D
R
P
V
G
Y
K
C
G
D
Y
T
L
P
41
41.69
100%
-31
- C- -
M041
-
A:
[3-117]
A
E
G
A
G
E
C
G
R
A
S
A
D
R
V
A
L
R
L
A
P
C
V
S
A
A
D
D
P
Q
S
A
P
S
S
S
C
C
S
A
V
H
T
I
G
Q
S
P
S
C
L
C
A
V
M
L
S
N
T
A
R
V
A
G
I
K
P
E
V
A
I
T
I
P
K
R
C
N
M
A
D
R
P
V
G
Y
K
C
G
D
Y
T
L
P