@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-04 )
ALSCGQVDSKLAPCVAYVTGRASAISKECCSGVQGLNGLARSSPDRQTACRCLKSLATSIKAINMGKVSGVPGKCGVSVPFPISMSTDCNKVH
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--..--10--.....--------....----20----.---.---------------------.-----.-----.------------...---30........40-----------.-.......50..--.--..-...60----.-------.---------.---------.----------.....70--........80........90..--------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALSCGQV--DS--K---LAPCV--------AYVT----GR----A---S---------------------A-----I-----S------------KEC---CSGVQGLNGLAR-----------S-SPDRQTACRCL--K--SL-ATSI-----K-------A---------I---------N----------MGKVSGV--PGKCGVSVPFPISMSTDCNKVH--------
22
HHSearch
93.58
53%
-117
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
--
T
S
--
N
---
L
A
P
C
L
--------
A
Y
L
R
----
N
T
----
G
-------------------------------
P
-----
L
------------
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
-
T
E
D
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A
C
T
C
L
--
K
--
S
A
-
A
G
A
I
-----
S
-------
G
---------
I
---------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
--------
23
HHSearch
88.62
50%
-124
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
--
S
S
--
S
---
L
A
P
C
I
--------
P
Y
V
R
----
G
G
--------
G
---------------------
A
-----
V
-----
P
------------
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
-
T
P
D
R
Q
A
A
C
N
C
L
--
K
--
Q
L
-
S
A
S
V
-----
P
-------
G
---------
V
---------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
--------
11
SP3
88.50
50%
-122
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
--
A
---
I
A
P
C
I
--------
S
Y
A
R
----
G
Q
----
G
---
S
---------------------
G
-----
P
-----
S
------------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
-
T
A
D
R
R
A
A
C
N
C
L
--
K
--
N
A
-
A
A
G
V
-----
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
--------
21
HHSearch
85.34
51%
-116
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
--
A
---
I
A
P
C
I
--------
S
Y
A
R
----
G
Q
----
G
---
S
---------------------
G
-----
P
-----
S
------------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
-
T
A
D
R
R
A
A
C
N
C
L
--
K
--
N
A
-
A
A
G
V
-----
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
--------
26
HHSearch
84.89
46%
-121
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
--
L
---
V
R
P
C
L
--------
S
Y
V
Q
----
G
G
--------
P
---------------------
G
-----
P
-----
S
------------
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
-
Q
S
D
R
Q
S
A
C
N
C
L
--
K
--
G
I
-
A
R
G
I
-----
H
-------
N
---------
L
---------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
---------
25
HHSearch
79.60
37%
-119
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
--
N
---
L
A
Q
C
I
--------
G
F
L
Q
----
K
G
--------
G
---------------------
V
-----
V
-----
P
------------
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
-
T
A
D
R
R
A
V
C
S
C
L
--
K
--
A
A
-
A
G
A
V
-----
R
-------
G
---------
I
---------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
--------
35
HHSearch
61.20
19%
-131
- C2 -
1SM7
-
?
A:
[13-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
---
L
R
A
C
Q
--------
Q
W
I
R
----
Q
Q
----
L
AG
S
P
F
S
E
NQWGPQQGP---------
S
-----
L
-----
R
------------
E
Q
C
---
C
N
E
L
Y
Q
E
--------------------
D
Q
V
C
V
C
P
T
L
--
K
--
Q
A
-
A
K
S
V
-----
R
VQ-----
G
Q--------
H
GPFQST
R
--
I
----------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
---------------------
34
HHSearch
60.15
20%
-155
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
P
S
C
R
--------
W
Y
V
T
S
R
TC
G
I
----
G
---
P
---------------------
R
-----
L
P
W
P
E
L
K
------------
R
R
C
---
C
R
E
L
A
D
I
--------------------
P
A
Y
C
R
C
T
A
L
--
S
--
I
L
-
M
D
G
A
-----
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
---------------------
10
Fugue
52.97
19%
-91
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
--
M
E
--
E
A
EM
L
N
H
C
G
--------
M
Y
L
M
----
K
N
----
L
---
G
---------------------
E
-----
R
-----
S
QVSPR
M
R
E
E
D
H
K
Q
L
C
---
C
M
Q
L
K
N
L
D
E
K
C
M
--------------------
C
P
A
I
--
M
--
M
M
-
L
N
E
P
MWIRM
R
-------
D
---------
Q
---------
V
----------
M
S
M
A
H
N
L
--
P
I
E
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-------
S
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C
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M
----------
27
HHSearch
50.88
24%
-93
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
--
Q
D
--
E
---
L
N
E
C
K
--------
P
A
V
S
----
K
E
----
N
---
P
T--------------------
S
-----
P
-----
S
------------
Q
P
C
---
C
T
A
L
Q
H
A
--------------------
D
F
A
C
L
C
G
Y
K
--
N
--
S
P
W
L
G
S
F
-------------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
--------------------
2
Fugue
48.10
22%
-61
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
--
Q
D
--
E
---
L
N
E
C
K
--------
P
A
V
S
----
K
E
N---
P
---
T
---------------------
S
-----
P
-----
S
------------
Q
P
C
---
C
T
A
L
Q
--------------------
H
A
D
F
A
C
L
C
G
Y
K
--
N
--
S
P
-
W
L
G
S
-----
F
-------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
------
P
T
C
------------
32
HHSearch
46.53
15%
-116
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
D
S
C
R
--------
W
Y
V
S
----
T
R
T
CGV
G
---
P
---------------------
R
LA
T
Q
E
M
-----
K
------------
A
R
C
---
C
R
Q
L
E
A
I
--------------------
P
A
Y
C
R
C
E
A
V
--
R
--
I
L
-
M
D
G
V
-----
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
--------------------
36
HHSearch
46.33
16%
-90
- C2 -
3OB4
-
?
A:
[428-485]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
------------
E
R
C
---
C
N
E
L
N
E
F
E
------------------
N
N
Q
R
C
M
C
E
A
L
--
Q
--
Q
I
-
M
E
N
Q
S
DRL-
Q
-------
G
---------
R
---------
Q
Q
E
Q
Q
F
-----
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
---------------------
37
HHSearch
46.07
18%
-97
- C2 -
1PSY
-
2SS_RICCO
A:
[25-122]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
---
L
S
S
C
E
--------
R
Y
L
R
----
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S
S
S
--
R
---
R
S
T
GEEVLRMPGDENQQQES--
Q
-----
Q
-----
L
------------
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Q
C
---
C
N
Q
V
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V
--------------------
R
D
E
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--
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Y
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----
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---------
L
HGEE
S
E
R
--
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
R
Q
T
----------------
14
SP3
45.57
16%
-86
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
-
A
G
S
V
--
V
D
--
A
---
L
R
A
V
R
--------
N
A
--------------------------------------
A
-----
P
-----
D
------------
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
-
V
W
Q
T
Q
T
A
V
Q
R
R
--
D
--
S
R
-
A
P
T
V
M
L
E
S
S
G
-------
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M
20
SP3
44.66
13%
-90
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
--
A
A
A
G
S
---
V
V
D
A
L
--------
R
A
V
R
----
N
A
----
A
---
P
---------------------
D
-----
L
-----
P
------------
C
E
V
E
--
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
-
V
W
Q
T
Q
T
A
V
Q
R
R
--
D
--
S
R
-
A
P
T
V
M
L
E
S
S
G
-------
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M
3
Fugue
44.04
23%
-76
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
---
L
T
V
C
T
--------
G
A
I
A
----
G
G
----
A
---
R
---------------------
P
-----------
T
------------
A
A
C
---
C
S
S
L
R
-----------------------
A
Q
Q
G
C
F
C
Q
--
F
--
A
K
-
D
P
R
Y
-----
G
-------
R
Y--------
V
---------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
-------
T
C
H
-----------
28
HHSearch
42.99
24%
-78
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[6-66]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
Q
---
L
T
V
C
T
--------
G
A
I
A
----
G
G
--------
A
---------------------
R
-----
P
-----
T
------------
A
A
C
---
C
S
S
L
R
A
-----------------------
Q
Q
G
C
F
C
Q
F
A
K
--
D
P
R
Y
G
R
--------------
Y
---------
V
---------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
---------------------
9
Fugue
42.19
11%
-85
- C2 -
1YOZ
-
Y941_ARCFU
A:
[9-124]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------GH
M
L
Y
I
N
S
F
--
L
D
--
R
---
M
G
E
I
I
R
GEKSVEE
A
D
K
L
----
L
D
----
Q
---
K
---------------------
N
-----
I
-----
F
------------
E
M
F
---
R
S
D
C
E
E
I
L
N
L
Y
K
-----------
S
G
K
A
E
K
E
E
V
Q
R
N
F
--
Y
--
L
L
-
K
T
Y
V
-----
V
-------
S
Q
L
S
I
H
F
---
E
---------
R
----------
L
K
E
F
A
E
S
--
K
G
E
K
K
L
D
P
E
V
I
N
E
I
A
L
Y
I
D
R
V
E
K
EV-----
5
Fugue
41.47
17%
-28
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
VQ
R
K
--
D
---
L
S
S
C
E
--------
R
Y
L
R
----
Q
S
----
S
---
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
-----
Q
-----
L
------------
Q
Q
C
---
C
N
Q
V
K
Q
V
R
D
E
C
Q
-----------
C
-
E
A
I
K
Y
I
A
E
D
Q
I
--
Q
Q
G
Q
L
-
H
G
E
E
-----
S
-------
E
---------
R
---------
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
-----
C
M
R
Q
T
R
T
N
----------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ALSCGQVDSKLAPCVAYVTGRASAISKECCSGVQGLNGLARSSPDRQTACRCLKSLATSIKAINMGKVSGVPGKCGVSVPFPISMSTDCNKVH
42
90.79
100%
-130
- C- -
M042
-
A:
[1-146]
A
L
S
C
G
Q
V
D
S
K
L
A
P
C
V
A
Y
V
T
G
R
A
S
A
I
S
K
E
C
C
S
G
V
Q
G
L
N
G
L
A
R
S
S
P
D
R
Q
T
A
C
R
C
L
K
S
L
A
T
S
I
K
A
I
N
M
G
K
V
S
G
V
P
G
K
C
G
V
S
V
P
F
P
I
S
M
S
T
D
C
N
K
V
H
44
90.60
100%
-133
- C- -
M044
-
A:
[1-93]
A
L
S
C
G
Q
V
D
S
K
L
A
P
C
V
A
Y
V
T
G
R
A
S
A
I
S
K
E
C
C
S
G
V
Q
G
L
N
G
L
A
R
S
S
P
D
R
Q
T
A
C
R
C
L
K
S
L
A
T
S
I
K
A
I
N
M
G
K
V
S
G
V
P
G
K
C
G
V
S
V
P
F
P
I
S
M
S
T
D
C
N
K
V
H
40
88.48
100%
-128
- C- -
M040
-
A:
[1-93]
A
L
S
C
G
Q
V
D
S
K
L
A
P
C
V
A
Y
V
T
G
R
A
S
A
I
S
K
E
C
C
S
G
V
Q
G
L
N
G
L
A
R
S
S
P
D
R
Q
T
A
C
R
C
L
K
S
L
A
T
S
I
K
A
I
N
M
G
K
V
S
G
V
P
G
K
C
G
V
S
V
P
F
P
I
S
M
S
T
D
C
N
K
V
H
45
45.37
100%
-
- C- -
M045
-
A:
[1-93]
A
L
S
C
G
Q
V
D
S
K
L
A
P
C
V
A
Y
V
T
G
R
A
S
A
I
S
K
E
C
C
S
G
V
Q
G
L
N
G
L
A
R
S
S
P
D
R
Q
T
A
C
R
C
L
K
S
L
A
T
S
I
K
A
I
N
M
G
K
V
S
G
V
P
G
K
C
G
V
S
V
P
F
P
I
S
M
S
T
D
C
N
K
V
H