@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 529_tII_ORYSI: (2014-05-10 )
GVVGVAGASCNAGQLTVCAGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTCH
Atome Classification :
(20 SA)
---------------------------------------------------------.........10----.--..--..---....20.--.-------------..--.--.-.-----.-----------30......-----.-----------.-----40........----.------50.------------..-----..--------...--.60-........70...-------...-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------GVVGVAGASC-----N--AG--
Q
L
---
T
V
C
A
GAI--A-------------GG--A--R-
P
-----
T
-----------
A
A
C
C
S
S
L
R
-----A-----------Q-----Q-
G
C
F
C
QFAK----D------P-R------------YG-----RY--------VNS--P
N
A
-
R
K
A
V
S
SCGI-ALP-------TCH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
91.12
97%
-138
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
-------------
G
G
--
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
L
R
-----
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
------
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
L
P
-------
T
C
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
91.12
97%
-138
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
-------------
G
G
--
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
L
R
-----
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
------
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
L
P
-------
T
C
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
89.17
88%
-138
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
-------------
G
G
--
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
L
R
-----
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
------
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
L
P
-------
T
C
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
83.74
61%
-122
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------
A
C
-----
Q
--
A
S
--
Q
L
---
A
V
C
A
S
A
I
--
L
-------------
S
G
--
A
--
K
-
P
-----
S
-----------
G
E
C
C
G
N
L
R
-----
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
A
K
----
D
------
P
-
T
------------
Y
G
-----
Q
Y
--------
I
R
S
--
P
H
A
-
R
D
T
L
T
S
C
G
L
-
A
V
P
-------
H
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
67.60
28%
-103
- C3 -
2RKN
2
DIRL1_ARATH
A:
[4-77]
-----------------------------------------------------------------
L
C
-----
G
MS
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
-------------
K
E
--
N
PT
S
-
P
-----
S
-----------
Q
P
C
C
T
A
L
Q
-----
H
-----------
A
-----
D
F
A
C
L
C
G
Y
K
N
----
S
------
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
G
L
-
A
N
A
P------
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
67.55
26%
-103
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------
A
I
D
L
C
G
M
-----
S
--
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
-------------
K
E
NP
T
--
S
-
P
-----
S
-----------
Q
P
C
C
T
A
L
Q
H
----
A
-----------
D
-----
F
-
A
C
L
C
G
Y
K
N
----
S
------
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
G
L
-
A
N
A
P------
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
62.39
32%
-85
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
----------------------------------------------------------------
I
T
C
-----
G
--
Q
V
S
S
S
L
---
A
P
C
I
P
Y
V
--
R
-------------
G
G
--
G
--
A
-
V
-----
P
-----------
P
A
C
C
N
G
I
R
-----
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--
L
K
----
Q
------
L
-
S
-------------
A
-----
S
V
PG------
V
N
P
--
N
N
A
-
A
A
L
P
G
K
C
G
V
-
S
I
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
60.61
22%
-136
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
---
N
H
C
G
M
Y
L
--
M
KN-----------
L
G
--
E
--
R
-
S
-----
Q
VSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
-----
N
L----------
D
-----
E
-
K
C
M
C
P
A
I
M
M
M
L
N
E
------
P
-
M
------------
W
I
-----
R
M
--------
R
D
Q
V
M
S
M
A
-
H
N
L
P
I
E
C
N
L
-
M
S
Q
-------
P
C
Q
M------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
60.10
26%
-85
* C3 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------
A
I
S
C
-----
G
Q
V
A
S
--
A
I
---
A
P
C
I
S
Y
A
--
R
-------------
G
Q
--
G
--
S
G
P
-----
S
-----------
A
G
C
C
S
G
V
R
-----
S
-----------
L
-----
N
-
N
A
----
A
R
----
T
------
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG------
L
N
A
--
G
N
A
-
A
S
I
P
S
K
C
G
V
-
S
I
P
YTISTST
D
C
S
RVN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
59.80
29%
-97
- C3 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
----------------------------------------------------------------
I
T
C
-----
G
--
Q
V
T
S
N
L
---
A
P
C
L
A
Y
L
--
R
-------------
N
T
--
G
----
P
-----
L
-----------
G
R
C
C
G
G
V
K
-----
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--
L
K
----
S
------
A
-
A
-------------
G
-----
A
I
SG------
I
N
L
--
G
K
A
-
A
G
L
P
S
T
C
G
V
-
N
I
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
59.79
32%
-71
- C3 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
----------------------------------------------------------------
I
S
C
-----
G
--
Q
V
A
S
A
I
---
A
P
C
I
S
Y
A
--
R
-------------
G
Q
--
G
--
S
G
P
-----
S
-----------
A
G
C
C
S
G
V
R
-----
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--
L
K
----
N
------
A
-
A
-------------
A
-----
G
V
SG------
L
N
A
--
G
N
A
-
A
S
I
P
S
K
C
G
V
-
S
I
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
56.32
28%
-66
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
---------------------------------------------------------------------------
D
S
--
L
V
---
R
P
C
L
S
Y
V
--
Q
-------------
G
G
--
P
--
G
-
P
-----
S
-----------
G
Q
C
C
D
G
V
K
-----
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
G
I
----
A
------
R
-
G
------------
I
H
------
N
--------
L
N
E
--
D
N
A
-
R
S
I
P
P
K
C
G
V
-
N
L
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
56.04
25%
-117
- C3 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
----------------------------------------------------------------
P
S
C
-----
P
------
D
L
---
S
I
C
L
N
I
L
GG
S
-------------
L
G
--
T
----------
V
-----------
D
D
C
C
A
L
I
G
-----
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
Q
L
R
----
A
---------------------
L
G
-----
I
---------
L
N
L
--
N
R
N
L
Q
L
I
L
N
S
C
G
R
-
S
Y
P
-------
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
53.22
26%
-83
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
---------------------------------------------------------------------------
Q
G
--
N
L
---
A
Q
C
I
G
F
L
--
Q
-------------
K
G
--
G
--
V
-
V
-----
P
-----------
P
S
C
C
T
G
V
K
-----
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
A
A
----
A
------
G
-
A
------------
V
R
------
G
--------
I
N
P
--
N
N
A
-
E
A
L
P
G
K
C
G
V
-
N
I
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
52.65
17%
-92
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
-----
E
--
A
E
--
M
L
---
N
H
C
G
M
Y
L
--
M
KNLGERSQVSPR
M
R
E
--
E
--
D
-
H
-----
K
-----------
Q
L
C
C
M
Q
L
K
-----
N
L----------
D
-----
E
-
K
C
M
C
P
A
I
M
----
M
M
L
N
EPM
W
-
I
------------
R
M
-----
R
D
--------
Q
V
M
--
S
M
A
-
H
N
L
P
I
E
C
N
L
-
M
S
Q
-------
P
C
Q
M------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
51.84
17%
-80
- C3 -
1KNG
-
CYCY_BRADU
A:
[50-193]
------------------------------------------------RPAPQ
T
A
L
P
P
L
E
G
L
Q
A
D
N
V
-----
Q
--
V
P
--
G
L
---
D
---
P
A
A
--
F
-------------
K
G
-----
K
-
V
S
L
V
N
V
W
-----------
A
S
W
C
V
P
C
H
-----
D
-----------
E
-----
A
-
P
L
L
T
E
L
G
K
----
D
------
K
-
R
------------
F
Q
L
V
G
I
N
Y
K
--------
D
A
A
--
D
N
A
-
R
R
F
L
G
R
Y
G
N
-
P
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L--------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
47.81
11%
-93
- C3 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------
P
R
G
S
A
L
-----
S
--
D
T
--
E
R
---
A
Q
-
L
D
V
M
--
K
-------------
L
L
--
N
--
V
-
S
-----
L
-----------
H
E
M
S
R
K
I
S
-----
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
----
D
------
P
V
S
------------
Y
G
-----
T
S
KRAPRRKA
L
S
V
--
R
D
E
-
R
N
V
I
R
A
A
S
N
-
S
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
47.81
21%
-70
- C3 -
1XFL
-
TRXH1_ARATH
A:
[1-114]
-------------------------------------------------------M
A
S
E
E
G
Q
V
I
A
C
H
-----
T
--
V
E
--
T
W
---
N
E
Q
L
Q
K
A
--
N
-------------
E
S
--
K
--
T
-
L
V
V
V
D
F
T
-----------
A
S
W
C
G
P
C
R
-----
F
-----------
I
-----
A
-
P
F
F
A
D
L
A
K
----
K
L
-----
P
-
N
------------
V
L
-----
F
L
K
-------
V
D
T
--
D
E
L
-
K
S
V
A
S
D
W
A
I
Q
A
M
P
-------
T
F
M
F
L
K
EGKIL
D
K
V
V
G
AKK
D
E
L
Q
S
T
I
A
K
H
LA---------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
39.91
15%
-58
- C3 -
1TDP
-
CB2I_CARML
A:
[1-111]
----------------------------MDIKS
Q
T
L
Y
L
N
L
S
E
A
Y
K
D
P
E
V
K
A
N
E
F
L
S
K
L
V
V
Q
C
A
G
K
L
T
-----
A
--
S
N
--
S
E
---
N
S
Y
I
E
V
I
--
S
-------------
L
L
--
S
--
R
-
G
-----
I
-----------
S
S
Y
Y
L
S
H
K
R
I
I
P
S
S
-----------
M
-----
L
-
T
I
Y
T
Q
I
Q
K
----
D
------
I
-
K
------------
N
G
-----
N
I
--------
D
T
E
--
K
L
R
-
K
Y
E
I
A
K
G
L
M
-
S
V
P
-------
Y
I
Y
F------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
39.50
13%
-93
- C3 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
Y
S
P
N
S
P
A
Q
P
Q
-----
T
--
A
G
--
T
L
T
L
L
P
V
A
L
R
A
P
--
V
-------------
T
A
--
G
--
Q
-
L
-----
A
-----------
V
E
N
G
H
Y
V
V
-----
E
-----------
T
-----
L
-
A
R
A
C
D
G
C
L
----
N
------
G
-
E
------------
F
A
-----
A
L
--------
I
T
G
--
P
V
H
-
K
G
V
I
N
D
A
G
I
-
P
F
T
-------
G
-
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
User Run . : Multi Template Modeling Result:
(1 SA)
.........10........20........30........40........50........60........70.....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
GVVGVAGASCNAG
Q
L
T
V
C
A
GAIAGGAR
P
T
A
A
C
C
S
S
L
R
AQQ
G
C
F
C
QFAKDPRYGRYVNSP
N
A
R
K
A
V
S
SCGIALPTCH
39
94.02
100%
-119
- C- -
M039
-
A:
[1-117]
G
V
V
G
V
A
G
A
S
C
N
A
G
Q
L
T
V
C
A
G
A
I
A
G
G
A
R
P
T
A
A
C
C
S
S
L
R
A
Q
Q
G
C
F
C
Q
F
A
K
D
P
R
Y
G
R
Y
V
N
S
P
N
A
R
K
A
V
S
S
C
G
I
A
L
P
T
C
H