@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 588_tV_POPTR: (2014-05-11 )
AGECGKNTTPDMEAFKMAPCASAAQDENSSVSSQCCARVKKIGQNPACLCAVMLSNTAKSSGIKPEIAMTIPKRCNIADRPVGYKCGAYTLP
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...---.....--.10-------...--.---.----...20..---------------....------------.-----------------.---------------30----------------.........40..---.--------.---------.---...50....------------.---.---.---------.------60-----------.--------.---------.---.-.....70--...-...--------.-.80..--......90.-------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGE---CGKNT--TP
D
-------
M
E
A
--F---K----MAPCASA---------------AQDE------------N-----------------S---------------
S
-----------------
V
S
S
Q
C
C
A
R
V
K
K
IG---Q--------
N
---------
P
---
A
C
L
C
A
V
M
L
S------------N---T---A---------K------S------------S--------G---------I---K-P
E
I
A
M
TI--PKR-CNI--------A-DRPVG--YKCGAYTLP-------------
32
SP3
75.60
21%
-94
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
--
S
C
G
-------
Q
V
A
--
S
---
A
----
I
A
P
C
I
S
Y
---------------
A
R
G
Q
------------
G
-----------------
S
---------------
G
-----------------
P
S
A
G
C
C
S
G
V
R
S
L
N
N
A
A
R
--------
T
---------
T
A
D
R
R
A
A
C
N
C
L
K
N
------------
A
---
A
---
A
---------
G
------
V
------------
S
--------
G
---------
L
---
N
-
A
G
N
A
A
S
I
--
P
S
K
-
C
G
V
--------
S
I
P
Y
T
I
S
TS
T
D
C
S
R
V
N
---------------
11
HHSearch
72.22
33%
-86
- C3 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
--
L
C
G
-------
M
S
Q
--
D
---
E
----
L
N
E
C
K
P
A
---------------
V
S
K
E
------------
N
P----------------
T
---------------
S
-----------------
P
S
Q
P
C
C
T
A
L
Q
H
A
-------------
D
---------
F
---
A
C
L
C
G
Y
K
N
S
------------
P
---
W
---
L
---------
G
------
S
------------
F
--------
G
---------
V
---
D
-
P
E
L
A
S
A
L
--
P
K
Q
-
C
G
L
--------
A
-
N
A
P
--------------------------
1
Fugue
72.20
36%
-90
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
---
C
G
---------------
M
S
Q
--
D
---
E
----
L
N
E
C
K
P
A
---------------
V
S
K
E
------------
N
P----------------
T
---------------
S
-----------------
P
S
Q
P
C
C
T
A
L
Q
H
A
-------------
D
---------
F
---
A
C
L
C
G
Y
K
N
S
------------
P
---
W
---
L
---------
G
------
S
------------
F
--------
G
---------
V
---
D
-
P
E
L
A
S
A
L
--
P
K
Q
-
C
G
L
--------
A
-
N
A
P
-----
T
C
-------------------
5
Fugue
68.25
19%
-102
- C3 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
---
C
Y
P
G
Q
--
A
F
Q
VPAL
P
A
C
R
P
L
--
L
---
R
----
L
Q
C
N
G
S
-----------------
Q
V
P
------------------------------
E
---------------
A
-----------------
V
L
R
D
C
C
Q
Q
L
A
H
I
-------------
S
---------
E
---
W
C
R
C
G
A
L
Y
S
------------
M
---
L
---
D
---------
S
-------
M
Y
K
E
HGAFPRCR
R
--------
E
---------
V
---
V
-
K
L
T
A
A
S
I
--
T
A
-V
C
R
L
P
I
V
VDASG
D
-
G
A
Y
V
C
--
K
D
V
A
A
Y
P
D
A
-------------
13
HHSearch
63.39
29%
-75
- C3 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
G
-------
Q
V
A
--
S
---
A
----
I
A
P
C
I
S
Y
---------------
A
R
G
Q
------------
G
-----------------
S
---------------
G
-----------------
P
S
A
G
C
C
S
G
V
R
S
L
N
---
N
A
-------
A
RT
T
A
D
R
R
--
A
---
A
C
N
C
--
L
K
N
----------------
A
---
A
---------
A
------
G
------------
V
S-------
G
---------
L
---
N
-
A
G
N
A
A
S
I
--
P
S
K
-
C
G
V
--------
S
-
I
P
---------------------------
41
SP3
62.99
18%
-63
- C3 -
1E19
1
CPKA_PYRFU
A:
[2-314]
G
K
R
V
V
I
A
L
G
GNALQQRGQKGS
Y
E
E
M
M
D
N
V
R
K
T
A
R
Q
I
A
E
I
I
A
R
GYE
V
V
I
T
H
G
N
G
P
Q
V
G
S
L
L
L
H
M
D
A
G
Q
A
T
YG
I
P
A
Q
P
M
D
V
A
G
A
M
S
Q
G
W
I
G
Y
M
I
Q
Q
A
L
K
N
E
L
R
K
R
G
M
E
K
K
V
V
T
I
I
T
Q
T
I
V
D
KNDPAFQNPT
K
P
V
G
P
FYD
E
E
T
A
K
R
L
A
R
E
KG
W
I
V
K
EDSGR
G
W
R
R
V
V
P
SPDPKGHVE
A
E
T
I
K
K
L
V
E
R
GVIVIASGGGGV
P
V
I
L
E
D
G
E
I
K
G
V
E
A
V
I
--
D
K
D
-------
L
A
G
--
E
---
K
----
L
A
E
E
V
N
A
D
I
F
M
I
L
T
DVN
G
A
A
L
Y
Y
G
T
E
------------
K
-----------------
E
Q
--------------
W
-----------------
L
R
E
V
K
V
E
E
L
R
K
Y
Y
---
E
--------
E
GHFKAGSM
G
P
---
K
V
L
A
A
I
---------------
R
---
F
---
I
---------
E
-------------------
W
--------
G
---------
G
---
E
-
R
-
A
I
I
A
H
--
L
E
---
K
A
--------
V
-
E
A
L
E
G
---
K
T
G
T
Q
V
L
P
-------------
17
HHSearch
62.72
27%
-67
- C3 -
1T12
-
NLTP1_TOBAC
A:
[3-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
-------
Q
V
T
--
S
---
N
----
L
A
P
C
L
A
Y
---------------
L
R
N
T
------------
G
---------------------------------------------------
P
L
G
R
C
C
G
G
V
K
A
L
V
---
N
--------
S
A
RT
T
E
D
R
Q
-
I
---
A
C
T
C
--
L
K
S
------------
A
-------
A
---------
G
------
A
------------
I
S-------
G
---------
I
---
N
-
L
G
K
A
A
G
L
--
P
S
T
-
C
G
V
--------
N
-
I
P
---------------------------
28
HHSearch
61.44
21%
-112
* C3 *
1SM7
-
?
A:
[5-100]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
Q
-------
R
E
F
--
Q
QE
Q
H
----
L
R
A
C
Q
Q
W
---------------
I
R
Q
Q
------------
L
-----------------
A
G
S
P
F
S
E
NQWGPQQGP
S
-----------------
L
R
E
Q
C
C
N
E
L
Y
Q
E
-------------
D
---------
Q
---
V
C
V
C
P
T
L
K
Q
------------
A
---
A
---
K
---------
S
V
RVQ--
G
Q-----------
H
--------
G
PFQST----
R
---
I
-
Y
Q
I
A
K
N
L
--
P
N
V
-
C
N
M
--------
K
-
Q
----------------------------
23
HHSearch
61.21
20%
-107
- C3 -
1HSS
-
IAA1_WHEAT
A:
[16-106]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
L
P
A
C
R
P
L
---------------
L
R
L
Q
C
N
GS--------
Q
VP---------------
E
---------------
A
-----------------
V
L
R
D
C
C
Q
Q
L
A
H
I
-------------
S
---------
E
---
W
C
R
C
G
A
L
Y
S
------------
M
---
L
D
S
M
Y
---------
K
------
E
------------
H
---------GAFPRCR
R
E
V
---
V
-
K
L
T
A
A
S
I
--
T
A
V
-
C
R
L
--------
P
-
I
V
V
D
-------------------------
16
HHSearch
59.41
24%
-87
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
-------
Q
V
S
--
S
---
S
----
L
A
P
C
I
P
Y
---------------
V
R
G
G
------------------------------
G
---------------
A
-----------------
V
P
P
A
C
C
N
G
I
R
N
V
N
---
N
L
A
RT
T
P
D
R
Q
---------
A
---
A
C
N
C
--
L
K
Q
----------------
L
---
S
---------
A
------
S
------------
V
P-------
G
---------
V
---
N
-
P
N
N
A
A
A
L
--
P
G
K
-
C
G
V
--------
S
-
I
P
---------------------------
29
HHSearch
58.65
17%
-104
- C3 -
1B1U
-
IAAT_ELECO
A:
[16-111]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
----
L
D
S
C
R
W
Y
---------------
V
S
T
R
T
CGVGP------
R
-----------------
L
A
T
Q
------------
E
-----------------
M
K
A
R
C
C
R
Q
L
E
A
I
-------------
P
---------
A
---
Y
C
R
C
E
A
V
R
I
L
M
D
---------
G
---
V
---
V
---------
T
PS----
G
Q
H
E
G
RLLQDL--
P
--------
G
CP
R
Q
-----
V
Q
--
R
A
F
A
P
K
L
V
T
--
E
V
E
-
C
N
L
--------
A
-
T
I
H
G
G
------------------------
14
HHSearch
58.39
25%
-78
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[2-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
C
G
-------
H
V
D
--
S
---
L
----
V
R
P
C
L
S
Y
---------------
V
Q
G
G
------------------------------
P
---------------
G
-----------------
P
S
G
Q
C
C
D
G
V
K
N
L
H
---
N
Q
ARS
Q
S
D
R
Q
---------
S
---
A
C
N
C
L
K
G
I
A
------------
R
-----------------
G
------
I
------------
H
--------
N
---------
L
---
N
-
E
D
N
A
R
S
I
--
P
P
K
-
C
G
V
--------
N
-
L
P
---------------------------
30
HHSearch
57.75
17%
-83
- C3 -
1BEA
-
ITRF_MAIZE
A:
[16-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
----
L
P
S
C
R
W
Y
---------------
V
T
S
R
------------
T
CGI--------------
G
PR-------------
L
P
W
P
E
-------------
L
K
R
R
C
C
R
E
L
A
D
I
-------------
P
---------
A
---
Y
C
R
C
T
A
L
S
I
------------
L
M
D
G
A
---
I
---------
P
P
G
PDAQ
L
E
G
R
---------
L
E
D
LPGCP
R
E
---------
V
---
Q
-
R
G
F
A
A
T
L
VT
E
A
E
-
C
N
L
--------
A
-
T
I
---------------------------
22
HHSearch
57.57
26%
-155
- C3 -
2DS2
-
?
B:
[7-63]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
Q
C
C
N
Q
L
R
Q
V
-------------
D
---------
R
---
P
C
V
C
P
V
L
R
Q
------------
A
---
A
Q
--
Q
V
L
Q
------
R
------
Q
II----------
Q
--------
G
P
Q
Q
L
R
----
R
---
L
-
F
D
A
A
R
N
L
--
P
N
I
-
C
N
I
--------
P
-
N
----------------------------
15
HHSearch
57.31
28%
-74
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[2-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
-------
Q
V
Q
--
G
---
N
----
L
A
Q
C
I
G
F
---------------
L
Q
K
G
------------------------------
G
---------------
V
-----------------
V
P
P
S
C
C
T
G
V
K
N
I
L
---
N
SSRTTADR
R
---------
A
---
V
C
S
C
L
--
K
-------------
A
---
A
---
A
---------
G
------
A
------------
V
R-------
G
---------
I
---
N
-
P
N
N
A
E
A
L
--
P
G
K
-
C
G
V
--------
N
-
I
P
---------------------------
7
Fugue
56.69
15%
-80
- C3 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPMRRE
R
G
R
---
Q
G
D
S
S
SC
E
R
Q
-------
V
D
R
--
V
---
N
----
L
K
P
C
E
Q
H
---------------
I
M
Q
R
------------
I
MGEQEQYDSYDIRSTR
S
S
---------------
D
-----------------
Q
Q
Q
R
C
C
D
E
L
N
E
M
E
---
N
--------
T
---------
Q
---
G
C
M
C
E
A
L
Q
Q
------------
I
---
M
---
E
N
Q
CDRLQDR
Q
------
M
------------
V
--------
Q
---------
Q
---
F
-
K
R
E
L
M
S
L
--
P
Q
Q
-
C
N
F
--------
R
-
A
P
Q
-----
R
C
D
L
D
V
S
G
GRCS---------
34
SP3
56.19
20%
-12
- C3 -
1PP7
2
?
U:
[5-118]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DLE
A
S
F
---
T
S
R
L
P
--
P
E
I
-------
V
A
A
--
L
---
K
--------
R
K
S
---------------
S
R
D
P
------------
N
-----------------
S
---------------
R
-----------------
F
P
R
K
L
H
M
L
L
T
Y
L
A
---
S
--------
N
---------
P
---
Q
L
E
E
E
I
G
L
S
WISDTEFKMKKK
N
---
V
---
A
---------
L
------
V
------------
M
--------
G
---------
I
---
K
-
L
N
-
T
L
N
V
--
N
L
R
--
D
L
--------
A
-
F
E
Q
L
Q
--
H
D
K
G
G
W
T
Q
W
KRSGFTRNSVFED
18
HHSearch
56.02
25%
-94
- C3 -
1N89
1
NLT2G_WHEAT
A:
[5-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
---
Q
----
L
A
V
C
A
S
A
---------------
I
L
S
G
------------------------------
A
---------------
K
-----------------
P
S
G
E
C
C
G
N
L
R
A
Q
-------------
Q
-------------
G
C
F
C
Q
Y
A
K
D
------------
P
---
T
---
Y
---------
G
------
Q
---------------------
Y
---------
I
---
R
-
S
P
H
A
R
D
T
--
L
T
S
-
C
G
L
--------
A
-
V
----------------------------
6
Fugue
53.37
14%
-77
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Y
G
---
R
G
R
T
E
--
S
G
C
-------
Y
Q
Q
--
M
---
E
E
A
EM
L
N
H
C
G
M
Y
---------------
L
M
K
N
LGERSQVSPR
M
R
E
-----------------
E
---------------
D
-----------------
H
K
Q
L
C
C
M
Q
L
K
N
L
-------------
D
---------
E
---
K
C
M
C
P
A
I
M
M
M
L
N
EP-------
M
---
W
---
I
---------
R
------
M
------------
R
--------
D
---------
Q
---
V
-
M
S
M
A
H
N
L
--
P
I
E
-
C
N
L
--------
M
-
S
Q
------
P
C
Q
M
-----------------
27
HHSearch
50.63
14%
-85
- C3 -
1W2Q
-
CONG_ARAHY
A:
[15-112]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
E
-------
R
Q
V
D
R
V
---
N
----
L
K
P
C
E
Q
H
---------------
I
M
Q
R
------------
I
-----------------
M
---------------
G
EQEQYDSYDIRSTR
S
S
D
Q
Q
Q
R
C
C
D
E
L
N
E
M
E
---
N
--------
T
---------
Q
---
G
C
M
C
E
A
L
Q
Q
------------
I
---
M
---
E
N
Q
CDRL---
Q
------
D
------------
R
--------
Q
---------
M
V
Q
Q
F
-
K
R
E
L
M
S
L
--
P
Q
Q
-
C
N
F
--------
R
------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AGECGKNTTP
D
M
E
A
FKMAPCASAAQDENS
S
V
S
S
Q
C
C
A
R
V
K
K
IGQ
N
P
A
C
L
C
A
V
M
L
SNTAKSSGIKP
E
I
A
M
TIPKRCNIADRPVGYKCGAYTLP
47
86.86
100%
-110
- C- -
M047
-
A:
[1-151]
A
G
E
C
G
K
N
T
T
P
D
M
E
A
F
K
M
A
P
C
A
S
A
A
Q
D
E
N
S
S
V
S
S
Q
C
C
A
R
V
K
K
I
G
Q
N
P
A
C
L
C
A
V
M
L
S
N
T
A
K
S
S
G
I
K
P
E
I
A
M
T
I
P
K
R
C
N
I
A
D
R
P
V
G
Y
K
C
G
A
Y
T
L
P
46
83.47
100%
-112
- C- -
M046
-
A:
[1-184]
A
G
E
C
G
K
N
T
T
P
D
M
E
A
F
K
M
A
P
C
A
S
A
A
Q
D
E
N
S
S
V
S
S
Q
C
C
A
R
V
K
K
I
G
Q
N
P
A
C
L
C
A
V
M
L
S
N
T
A
K
S
S
G
I
K
P
E
I
A
M
T
I
P
K
R
C
N
I
A
D
R
P
V
G
Y
K
C
G
A
Y
T
L
P
44
48.08
100%
46
- C- -
M044
-
A:
[7-153]
A
G
E
C
G
K
N
T
T
P
D
M
E
A
F
K
M
A
P
C
A
S
A
A
Q
D
E
N
S
S
V
S
S
Q
C
C
A
R
V
K
K
I
G
Q
N
P
A
C
L
C
A
V
M
L
S
N
T
A
K
S
S
G
I
K
P
E
I
A
M
T
I
P
K
R
C
N
I
A
D
R
P
V
G
Y
K
C
G
A
Y
T
L
P