@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 686_tII_BRADI: (2014-05-13 )
AAATTCNAGQLAACAAAVMTGAKPSAACCSNLRAQQRCFCNYAKNPVYGRYIKSPYVRQTVATCGIVLPRC
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......---..--10---.......--.20------------.--.--.--------.-----.....30------------..-.-----------.-----.-...40.....-.------------..-----50--------...------...-.----.---60........-------70-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTCN---A
G
--
Q
L
---
A
A
C
A
A
A
V
--MT-------------G--A--K--------
P
-----
S
A
A
C
C
S
N
------------
L
R
-
A
-----------
Q
-----
Q
-
R
C
F
C
NYAKNP-V------------Y
G
-----
R
Y--------IKS------
P
Y
V
-
R
----
Q
---
T
V
A
TCGIVLP-------RC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
95.73
60%
-140
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
---
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
G
-------------
G
--
A
--
R
--------
P
-----
T
A
A
C
C
S
S
------------
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
------
P
N
A
-
R
----
K
---
A
V
S
S
C
G
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
95.44
60%
-140
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
---
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
G
-------------
G
--
A
--
R
--------
P
-----
T
A
A
C
C
S
S
------------
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
------
P
N
A
-
R
----
K
---
A
V
S
S
C
G
I
A
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
94.66
57%
-140
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
---
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
G
-------------
G
--
A
--
R
--------
P
-----
T
A
A
C
C
S
S
------------
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
------
P
N
A
-
R
----
K
---
A
V
S
S
C
G
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
92.76
60%
-134
- C2 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
Q
---
A
S
--
Q
L
---
A
V
C
A
S
A
I
--
L
S
-------------
G
--
A
--
K
--------
P
-----
S
G
E
C
C
G
N
------------
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
A
K
D
P
-
T
------------
Y
G
-----
Q
Y
--------
I
R
S
------
P
H
A
-
R
----
D
---
T
L
T
S
C
G
L
A
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
73.82
28%
-123
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
D
L
C
G
MS-
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
K
-------------
E
NP
T
--
S
--------
P
-----
S
Q
P
C
C
T
A
------------
L
Q
H
A
-----------
D
-----
F
-
A
C
L
C
G
Y
K
N
S
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
------
E
L
A
-
S
----
A
---
L
P
K
Q
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
71.28
32%
-117
- C2 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
---
Q
V
T
S
N
L
---
A
P
C
L
A
Y
L
--
R
N
-------------
T
--
G
-----------
P
-----
L
G
R
C
C
G
G
------------
V
K
-
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--
L
K
S
A
-
A
-------------
G
-----
A
I
SG------
I
N
L
------
G
K
A
-
A
----
G
---
L
P
S
T
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
69.52
26%
-118
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
MS-
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
K
-------------
E
--
N
PT
S
--------
P
-----
S
Q
P
C
C
T
A
------------
L
Q
-
H
-----------
A
-----
D
F
A
C
L
C
G
Y
K
N
S
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
------
E
L
A
-
S
----
A
---
L
P
K
Q
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
67.32
23%
-89
* C2 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
-
A
S
--
A
I
---
A
P
C
I
S
Y
A
--
R
G
-------------
Q
--
G
--
S
G-------
P
-----
S
A
G
C
C
S
G
------------
V
R
-
S
-----------
L
-----
N
-
N
A
----
A
R
T
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG------
L
N
A
------
G
N
A
-
A
----
S
---
I
P
S
K
C
G
V
S
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
62.83
27%
-99
- C2 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
G
---
Q
V
A
S
A
I
---
A
P
C
I
S
Y
A
--
R
G
-------------
Q
--
G
--
S
G-------
P
-----
S
A
G
C
C
S
G
------------
V
R
-
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--
L
K
N
A
-
A
-------------
A
-----
G
V
SG------
L
N
A
------
G
N
A
-
A
----
S
---
I
P
S
K
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
60.18
28%
-102
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-79]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
---
Q
V
S
S
S
L
---
A
P
C
I
P
Y
V
--
R
G
-------------
G
--
G
--
A
--------
V
-----
P
P
A
C
C
N
G
------------
I
R
-
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--
L
K
Q
L
-
S
-------------
A
-----
S
V
PG------
V
N
P
------
N
N
A
-
A
----
A
---
L
P
G
K
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
58.83
23%
-92
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
--
N
L
---
A
Q
C
I
G
F
L
--
Q
K
-------------
G
--
G
--
V
--------
V
-----
P
P
S
C
C
T
G
------------
V
K
-
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
A
A
A
G
-
A
------------
V
R
------
G
--------
I
N
P
------
N
N
A
-
E
----
A
---
L
P
G
K
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
57.46
15%
-134
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
---
A
E
--
M
L
---
N
H
C
G
M
Y
L
--
M
K
NLGERSQVSPR
M
R
E
--
E
--
D
--------
H
-----
K
Q
L
C
C
M
Q
------------
L
K
-
N
L----------
D
-----
E
-
K
C
M
C
P
A
I
M
M
M
-
L
------------
N
E
-----
P
M
--------
W
I
R
MR
D
Q
V
M
S
M
A
-
H
----
N
---
L
P
I
E
C
N
L
M
S
Q
-------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
57.28
16%
-104
- C2 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
T
---
A
G
--
T
L
T
L
L
P
V
A
L
R
A
P
--
V
T
-------------
A
--
G
--
Q
--------
L
-----
A
V
E
N
G
H
Y
------------
V
V
-
E
-----------
T
-----
L
-
A
R
A
C
D
G
C
L
N
G
-
E
------------
F
A
-----
A
L
--------
I
T
G
------
P
V
H
-
K
----
G
---
V
I
N
D
A
G
I
P
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
10
HHSearch
55.09
20%
-105
- C2 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
C
P
-------
D
L
---
S
I
C
L
N
I
L
GG
S
L
-------------
G
--
T
-----------------
V
D
D
C
C
A
L
------------
I
G
-
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
Q
L
R
A
---------------
L
G
-----
I
---------
L
N
L
------
N
R
N
L
Q
----
L
---
I
L
N
S
C
G
R
S
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
51.93
25%
-56
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
L
V
---
R
P
C
L
S
Y
V
--
Q
G
-------------
G
--
P
--
G
--------
P
-----
S
G
Q
C
C
D
G
------------
V
K
-
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
G
I
A
R
-
G
------------
I
H
------
N
--------
L
N
E
------
D
N
A
-
R
----
S
---
I
P
P
K
C
G
V
N
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
SP3
50.28
16%
-85
- C2 -
1EZM
-
?
?:
[1-298]
A
E
A
G
G
P
G
G
N
QKI
G
K
Y
T
Y
GSD
Y
G
P
L
I
V
N
DRCEMDDGN
V
I
T
V
DMNSSTDDSKTTPFRFACPTNTYKQVNGAYS
P
L
N
D
A
H
F
F
G
G
V
V
F
K
L
Y
R
D
WFGTSPLT
H
K
L
Y
M
K
V
HYGRSVE
N
A
Y
W
DGT
A
M
L
F
G
DGATMFYPLVS
L
D
V
A
A
H
E
V
S
H
G
F
T
E
Q
N
SGLIYRG
Q
S
G
G
M
N
E
A
F
S
D
M
A
G
E
A
A
E
F
Y
M
RGKNDFLIGYDIKKGSGALRYMDQPSRDGRSIDNASQYYNGIDVHHSS
G
V
Y
N
R
A
F
Y
L
L
A
N
S
P
G
W
D
T
R
K
A
F
--
E
V
---
F
--
V
D
A
N
--
R
Y
-------------
Y
--
W
--
T
--------
A
-----
T
----
S
N
------------
Y
N
-
S
-----------
G
-----
A
-
C
G
V
I
R
S
A
Q
N
----------------------
R
N
--------
Y
S
A
------
A
D
V
-
T
----
R
---
A
F
S
T
V
G
V
T
C
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
48.70
19%
-83
- C2 -
1GD8
-
RL17_THET8
A:
[14-118]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
S
H
R
L
A
L
Y
R
N
Q
A
K
S
L
L
T
HG
R
I
T
T
T
V
P
K
---
A
K
--
E
L
---
R
G
F
V
D
H
L
--
I
H
-------------
L
--
A
--
K
R
GD
L
H
A
R
R
L
-----
V
L
R
D
L
Q
D
------------
V
K
-
L
-----------
V
-----
R
-
K
L
F
D
E
I
A
P
R
Y
-
R
DRQGG-------
Y
T
-----
R
V
--------
L
K
L
------
A
E
R
-
R
R
GDG
A
---
P
L
A
L
V
E
L
V
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
45.62
11%
-81
- C2 -
1U78
-
TC3A_CAEEL
A:
[2-104]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
R
G
S
A
L
S
---
D
T
--
E
R
---
A
Q
-
L
D
V
M
--
K
L
-------------
L
--
N
--
V
--------
S
-----
L
H
E
M
S
R
K
------------
I
S
-
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
D
P
V
S
------------
Y
G
-----
T
S
KRAPRRKA
L
S
V
------
R
D
E
-
R
----
N
---
V
I
R
A
A
S
N
S
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
43.87
12%
-72
- C2 -
1IGN
-
RAP1_YEAST
A:
[8-93]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
S
F
T
D
E
---
E
D
--
E
F
---
I
L
D
V
V
R
K
--
N
P
-------------
T
--
R
--
R
--------
T
-----
T
H
T
L
Y
D
E
I
S
H
Y
V
PNHT
G
N
S
I
R
-
H
-----------
R
-----
F
-
R
V
Y
L
S
K
R
L
E
Y
-
V
------------
Y
E
-----
V
D
--------
K
F
G
------
K
L
V
-
R
----
D
DDG
N
L
I
K
T
K
V
L
P
P
-------
S
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
43.18
14%
-87
- C2 -
1KNG
-
CYCY_BRADU
A:
[50-193]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPAPQ
T
A
L
P
P
L
E
G
L
Q
A
D
---
N
V
--
Q
V
---
P
G
L
D
P
A
A
--
F
K
-------------
G
-----
K
--------
V
S
L
V
N
V
W
A
S
W
C
V
P
------------
C
H
-
D
-----------
E
-----
A
-
P
L
L
T
E
L
G
K
D
K
-
R
------------
F
Q
L
V
G
I
N
Y
K
--------
D
A
A
------
D
N
A
-
R
----
R
---
F
L
G
R
Y
G
N
P
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AAATTCNA
G
Q
L
A
A
C
A
A
A
V
MTGAK
P
S
A
A
C
C
S
N
L
R
A
Q
Q
R
C
F
C
NYAKNPVY
G
R
YIKS
P
Y
V
R
Q
T
V
A
TCGIVLPRC
39
97.56
100%
-137
- C- -
M039
-
A:
[1-108]
A
A
A
T
T
C
N
A
G
Q
L
A
A
C
A
A
A
V
M
T
G
A
K
P
S
A
A
C
C
S
N
L
R
A
Q
Q
R
C
F
C
N
Y
A
K
N
P
V
Y
G
R
Y
I
K
S
P
Y
V
R
Q
T
V
A
T
C
G
I
V
L
P
R
C
40
94.07
100%
-136
- C- -
M040
-
A:
[1-111]
A
A
A
T
T
C
N
A
G
Q
L
A
A
C
A
A
A
V
M
T
G
A
K
P
S
A
A
C
C
S
N
L
R
A
Q
Q
R
C
F
C
N
Y
A
K
N
P
V
Y
G
R
Y
I
K
S
P
Y
V
R
Q
T
V
A
T
C
G
I
V
L
P
R
C
35
56.67
100%
-49
- C- -
M035
-
A:
[4-71]
A
A
A
T
T
C
N
A
G
Q
L
A
A
C
A
A
A
V
M
T
G
A
K
P
S
A
A
C
C
S
N
L
R
A
Q
Q
R
C
F
C
N
Y
A
K
N
P
V
Y
G
R
Y
I
K
S
P
Y
V
R
Q
T
V
A
T
C
G
I
V
L
P
R
C