@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0218: (2015-11-29 )
MHELSHMVENELNLSLEQEFLYKVYQDIERNLKQANIFVQKIIGQVIFKEIQAYQAAKPRTSELFALF
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........---20........30--.--.--......40...-.-....50..-------......60.......-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
H
E
L
S
H
M
V
E
N
ELN
L
S
L
E
Q
E
---
F
L
Y
K
V
Y
Q
D
I
E
R
N
--
L
--
K
--
Q
A
N
I
F
V
Q
K
I
I
G
-
Q
-
V
I
F
K
E
I
Q
A
-------
Y
QAAKPRT
S
E
LFALF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
89.11
25%
-75
- C16 -
3RFY
-
CYP38_ARATH
A:
[78-433]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
G
I
L
L
V
A
N
P
VIPD
V
S
V
L
I
S
GPPIKD
P
E
A
L
L
R
Y
A
LPIDN
K
A
I
R
E
V
Q
K
P
L
E
D
-
I
T
D
S
L
K
I
A
---
G
V
-
K
A
L
D
S
V
E
R
N
--
V
--
R
--
Q
A
S
R
T
L
Q
Q
--
G
-
K
-
S
I
I
V
A
G
F
A
--------
E
S
K
K
D
H
G
N
E
M
I
E
K
L
E
A
G
M
Q
D
M
L
KIVEDRKRDAVAP
K
Q
K
E
I
L
K
Y
V
G
G
I
E
E
D
M
VDGFPYEVPEEYRNMPLLK
G
R
A
S
V
D
M
K
V
K
I
K
DNPNIE
D
C
V
F
R
I
V
L
D
GYNA
P
V
T
A
G
N
F
V
D
L
V
E
R
HFYDG
M
E
I
Q
R
S
D
G
F
V
VQT
G
D
P
E
G
P
A
E
G
F
I
D
P
S
T
E
K
TRTVPLEIMVTGEKT
P
F
Y
G
S
T
LEELG
L
Y
K
A
Q
V
V
I
P
F
N
A
F
G
T
M
A
M
A
R
EEF
E
N
D
S
GSSQVFW
L
L
K
E
S
E
L
T
PSNSNILDGR
Y
A
V
F
G
YVTDNEDFLADLKVGDVIE
S
I
Q
V
VSGLENLANPSY
27
Fugue
86.68
21%
-60
- C16 -
2VKJ
2
?
A:
[1-106]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSH
M
N
L
A
V
K
L
T
R
M
E
K
T
L
K
A
Y
E
L
---
Y
I
F
S
D
Y
E
N
F
E
N
Y
--
V
--
K
--
K
E
G
L
---
K
I
E
G
-
M
-
E
L
L
K
E
K
K
A
--------
R
S
L
I
A
E
G
K
D
L
F
E
T
A
N
Y
G
E
A
L
V
F
F
E
K
A
L
N
L
SDN
E
E
I
K
K
I
A
S
F
Y
L
E
E
C
R
K
K
L
A
GD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
81.44
13%
-74
- C16 -
2X0O
5
?
A:
[7-601]
PH
P
A
E
I
V
A
HLQ
P
E
I
W
N
K
V
N
R
L
L
V
R
K
A
I
S
E
Y
A
H
E
WL
L
E
P
Q
R
LGPGETPG
F
E
R
F
R
L
T
L
A
DG
A
Q
Y
D
F
D
A
Q
V
M
A
MR
H
W
R
I
PPES
I
V
K
T
V
AG
V
P
A
P
LD
A
L
Q
F
V
I
E
I
R
DKLGLPVDR
L
P
I
Y
M
D
E
I
T
S
T
L
H
G
S
A
Y
K
H
G
RTTLG
A
A
A
L
A
R
AD
Y
Q
T
I
E
T
S
MIEGHPSFVANNGRLGFD
A
E
D
Y
H
G
YAPEAAT
P
V
R
L
M
W
L
A
V
H
KDN
A
H
F
S
C
L
SDMD
Y
D
S
L
M
S
E
E
LG
E
S
A
V
T
D
F
A
A
R
L
R
E
Q
GLHPAD
Y
Y
F
M
P
A
H
P
W
Q
W
F
N
KLSLAF
A
P
Y
V
A
Q
RKIVCLGYGE
E
Q
Y
L
A
Q
QSIRTFFNISRPG
K
R
Y
V
K
T
S
L
SILNMGFMRGLS
P
Y
Y
M
A
G
T
P
A
I
N
E
Y
I
H
D
L
I
S
A
D
P
W
L
R
A
N
GFRILREV
A
S
M
G
F
R
N
Y
Y
Y
E
A
A
I
DTDTPYKKM
F
S
A
L
W
R
E
N
P
L
T
L
I
APG
Q
N
L
M
T
MAALLHVDPQGRA
L
L
P
E
L
I
Q
A
S
GLD
A
G
T
W
L
E
R
Y
V
D
A
Y
L
T
P
L
I
H
C
F
Y
A
HDLVFMPHGEN
V
I
L
V
I
Q
DGVPV
R
A
F
M
K
DIAEESSILNPQVRLPQAA
Q
R
L
A
A
D
V
P
E
A
Y
K
L
L
T
I
F
V
D
---
V
F
E
G
Y
F
R
H
L
T
Q
I
--
L
--
V
--
E
T
E
L
M
P
E
H
D
F
W
-
R
-
L
V
A
G
R
I
A
A
-------
Y
Q
Q
A
H
P
Q
R
L
D
K
Y
R
R
Y
DLFAP
D
M
I
H
S
C
L
N
R
L
Q
L
AAPNLPNPIACF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
78.40
19%
-71
- C15 -
2LU7
-
A:
[1-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
R
V
R
S
T
P
G
G
D
L
E
L
V
V
H
L
S
GPG
G
P
V
R
W
Y
K
D
G
E
R
L
--
A
--
S
--
Q
G
R
V
Q
L
E
Q
A
G
A
-
R
-
Q
V
L
R
V
Q
G
A
RSGDA
G
E
Y
L
C
D
A
P
Q
D
S
R
I
F
L
V
S
VEEP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
78.10
26%
-57
- C16 -
1OJH
1
?
A:
[5-56]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
L
S
L
E
Q
Q
---
F
S
I
R
S
F
A
T
Q
V
Q
N
MS
H
--
D
--
Q
A
K
D
F
L
V
K
L
Y
E
-
Q
M
V
V
R
E
A
T
Y
Q
-------
E
L
L
K
H
Q
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
76.05
24%
-66
- C16 -
2Q8V
1
?
A:
[8-50]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
V
D
L
S
F
E
Q
E
---
F
Q
M
R
V
M
E
E
Q
V
S
A
--
M
--
S
L
Q
E
A
R
E
L
L
L
Q
A
S
R
-
L
-
L
M
M
K
D
N
V
I
-------
R
S
L
V
K
R
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
75.27
33%
-88
- C16 -
1OJH
1
?
A:
[5-45]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
L
S
L
E
Q
Q
---
F
S
I
R
S
F
A
T
Q
V
Q
N
--
M
S
H
D
--
Q
A
K
D
F
L
V
K
L
Y
E
-
Q
-
M
V
V
R
E
A
T
Y
-------
Q
E
L
L
K
H
Q
W
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
75.21
16%
-76
* C16 *
2OP5
4
?
A:
[5-115]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TDETAFLNS
L
F
M
D
F
TS
E
N
E
L
E
L
F
L
K
S
L
D
E
V
W
S
E
D
L
Y
S
R
L
S
A
A
---
G
L
I
R
H
V
I
S
K
V
W
N
--
K
--
E
--
Q
H
R
------
I
S
M
V
-
F
E
Y
D
S
K
E
G
-------
Y
Q
K
C
Q
E
I
I
D
K
E
F
G
I
T
L
K
E
K
L
K
K
F
V
F
K
I
H
N
N
R
G
V
V
V
S
E
F
I
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
73.98
47%
1
- C16 -
1GKU
-
RGYR_ARCFU
B:
[419-441]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
E
-
V
I
F
P
D
L
R
T
-------
Y
I
Q
G
S
G
R
T
S
R
L
F
A
G
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
71.96
31%
73
- C16 -
1J7N
1
LEF_BACAN
A:
[685-697]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
H
E
F
G
H
A
V
D
D
Y
A
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
70.30
59%
-29
- C16 -
2H63
-
BIEA_HUMAN
A:
[248-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
--
K
--
D
Q
N
I
F
V
Q
K
L
L
G
-
Q
-
F
S
E
K
E
L
A
A
-------
E
K
K
R
I
L
H
C
L
G
L
A
E
E
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
69.83
23%
99
- C16 -
3KHI
2
MTFA_KLEP7
A:
[149-161]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
H
E
V
A
H
K
L
D
T
R
N
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
69.78
47%
-10
- C16 -
1GL9
-
RGYR_ARCFU
B:
[419-441]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
E
-
V
I
F
P
D
L
R
T
-------
Y
I
Q
G
S
G
R
T
S
R
L
F
A
G
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
69.73
38%
-56
- C11 -
2RJP
2
ATS4_HUMAN
A:
[148-155]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
H
Q
L
G
H
V
F
N
M
L
H
D
N
S
K
P
C
I
---
S
L
N
G
P
L
S
T
S
R
H
V
--
M
--
A
--
P
V
M
A
H
V
D
P
E
E
P
-
W
-
S
P
C
S
A
R
F
I
-------
T
D
F
L
D
N
G
Y
G
H
C
L
L
D
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
69.45
23%
-75
- C16 -
3CS5
-
NBLA_SYNE7
A:
[12-48]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
Q
Q
---
F
D
L
Q
K
Y
R
Q
Q
V
R
D
--
I
--
S
R
E
D
L
E
D
L
F
I
E
V
V
R
-
Q
-
K
M
A
H
E
N
I
F
-------
K
G
M
I
R
Q
G
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
69.43
13%
-20
- C16 -
2JMS
-
?
A:
[1-63]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
P
E
E
H
F
D
P
N
T
N
---
C
D
Y
T
N
S
Q
D
A
W
D
Y
--
C
--
T
----
N
Y
I
V
N
S
S
C
G
-
E
-
I
C
C
N
D
C
F
D
-------
E
T
G
T
G
A
C
R
A
Q
A
F
G
N
S
CLNW---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
69.39
50%
-59
- C7 -
2V4B
1
ATS1_HUMAN
A:
[148-155]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
H
E
L
G
H
V
F
N
M
P
H
D
D
A
K
Q
C
A
---
S
L
N
S
H
M
M
A
S
M
L
D
--
H
--
S
--
Q
P
W
S
P
C
S
A
Y
M
I
-
T
-
S
F
L
D
N
G
H
G
-------
E
C
L
M
D
K
P
Q
N
P
I
Q
L
P
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
68.14
38%
-36
- C2 -
2RJQ
2
A:
[148-155]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
H
E
I
G
H
L
L
G
L
S
H
D
D
S
K
F
C
E
---
E
T
F
G
S
T
E
D
K
R
L
M
--
S
--
S
--
I
L
T
S
I
D
A
S
K
P
W
-
S
-
K
C
T
S
A
T
I
T
-------
E
F
L
D
D
G
H
G
N
C
L
L
D
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
68.05
38%
-15
- C3 -
1R55
2
A:
[141-148]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
H
E
I
G
H
S
L
G
L
S
H
D
P
D
G
C
C
V
---
E
A
A
A
E
S
G
G
C
V
M
A
--
A
--
A
--
T
G
H
P
F
P
R
V
F
S
A
-
C
-
S
R
R
Q
L
R
A
F
-------
F
R
K
G
G
G
A
C
L
S
N
A
P
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
67.77
44%
-35
- C1 -
1YP1
2
?
A:
[140-148]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
H
E
L
G
H
N
L
G
M
L
H
D
D
G
Y
S
C
D
---
C
D
V
C
I
M
A
P
S
L
S
S
--
D
--
P
--
T
K
V
F
S
N
C
S
L
I
L
-
Y
-
E
D
F
L
S
N
E
E
-------
P
D
C
I
D
N
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------