@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0716: (2016-03-18 )
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
Atome Classification :
(17 SA)
----------------------.........10.......---------.20-........30.....-...40-------........-----------.50----.....---------...60..---......-------70........-.80.......-------.90..------------------......--------------100..-.....110....--..----..120.......130---------.......140--------........150.......160.......170.....--..180--------....---.....190--....---.....---------200.......-210----.......220.......230......---.240....-----------...250......--.260..---.....270.....-..-------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------M
G
I
V
F
NYID
P
V
AFNLG
P
L
---------
S
V
R
-
W
Y
G
I
I
I
A
V
G
I
L
L
G
Y
F
-
V
A
Q
R
--------
A
L
V
K
AGLH-----------
K
D
T
----
L
V
D
I
I
---------
F
Y
S
A
L
F
G
---
F
I
A
A
R
I
-------
Y
-
F
V
I
F
QWPY-YAE
N
P
S
E
I
I
K
-------IWHG
G
------------------
I
A
I
HG
G
--------------
L
I
G
G
F
-
I
A
G
V
I
V
-
C
K
VKN--LN----PFQIG
D
I
V
A
P
S
I
I
L
A
---------
Q
G
I
G
R
W
GNF---------MNHEAHGG
P
V
S
R
A
F
L
E
Q
LHL
P
N
F
I
I
E
N
M
Y
IN
G
Q
YY
H
--
P
T
F
----------
L
Y
E
S
---
I
W
D
V
A
G
----
F
I
I
L
---
V
N
I
R
K
---------
H
LKLG
E
T
F
F
L
-
Y
L
T
----
W
Y
S
I
G
R
F
F
I
E
GLRTD
S
L
M
L
TSN
I
R
V
A
---
Q
L
V
S
I
L
L
I
-----------
L
I
S
I
S
L
I
V
Y
R
RI--KYNP
P
L
---
Y
SKVGALPWPTKK-VK-------------------------------
13
Fugue
84.52
25%
-166
- C6 -
3P06
7
?
A:
[1-194]
----------------------
N
G
V
E
L
S
-------------------------------
A
V
G
V
L
L
P
V
L
M
D
S
G
R
--------
R
--------------------------------------------------
I
S
G
G
A
-------
F
M
A
V
K
G
D
L
S
E
-
H
I
K
N
P
K
N
T
---------------------------------
R
I
A
Q
T
--------------
V
A
G
G
T
-
I
Y
G
L
S
E
M
V
N
I
D
E
--
A
E
----
K
L
P
I
K
G
A
I
T
---
V
L
------------------------------------
P
V
V
Q
A
T
A
T
S
I
L
V
P
D
------------
N
Q
--
P
Q
L
----------
A
F
N
S
----
W
E
A
A
A
----
C
A
A
D
-----------------
T
L
E
S
Q
Q
T
P
F
L
M
V
---------
T
G
A
V
E
S
G
N
L
S
P
N
L
L
A
V
Q
K
Q
L
L
V
A
---
K
P
A
G
I
G
L
A
-----------
A
N
S
D
R
---
A
L
K
V
--
V
T
L
E
Q
L
---
R
Q
V
V
G
D
K
P
W
R
-
K
P
M
V
T
F
S
S
G
KNVAQA---------------------
14
Fugue
79.76
17%
-119
- C9 -
4YLR
1
TTLL7_HUMAN
A:
[9-453]
----------------T
I
T
A
N
V
A
G
T
K
F
E
I
V
R
L
V
I
D
E
M
G
F
M
K
T
PDEDETS
N
L
I
-
W
C
D
S
A
V
Q
Q
E
K
I
S
E
L
Q
-
N
Y
Q
R
I
NHFPGMG
E
I
C
R
K
D
F
L
-----------
A
R
N
----
M
T
K
M
I
---------
K
S
R
P
L
D
Y
---
T
F
V
P
R
T
-------
W
-
I
F
P
A
E
Y
T
Q
-
F
Q
N
Y
V
K
E
L
K
K
K
R
K
Q
K
T
F
I
V
K
P
I
------------------
S
L
I
R
N
S
QDH
L
I
V
Q
E
Y
IEKPF
L
M
E
G
Y
K
F
D
L
R
I
Y
-
I
L
V
T
S
--
C
D
----
P
L
K
I
F
L
Y
H
D
G
L
V
R
M
G
T
E
K
Y
I
PG
S
K
R
S
I
K
W
F
T
E
F
---------
L
Q
A
N
Q
H
D
V
A
K
F
W
S
D
I
S
E
L
V
V
K
T
L
I
V
A
E
P
H
V
L
H
A
Y
R
M
C
R
P
G
Q
----------
P
P
G
S
ESV
C
F
E
V
L
G
----
F
D
I
L
---
L
D
R
K
L
---------
K
-----
P
W
L
L
-
Q
I
N
----
R
A
P
-------
S
F
G
T
D
Q
-
K
I
D
Y
D
V
K
R
G
---
V
L
L
N
A
L
K
L
-----------
L
N
I
R
T
M
G
N
Y
R
R
I
YP
P
E
D
K
A
L
---
L
E
K
Y
E
N
L
L
A
V
A
F
Q
-
T
F
L
S
G
R---------------------------
17
Fugue
76.27
13%
-124
- C9 -
2OCC
-
COX3_BOVIN
C:
[1-261]
MTHQTHAYHMVNPSP
W
P
L
T
G
A
L
S
A
L
L
M
T
S
G
L
T
M
W
F
H
F
N
S
M
---------
T
L
L
-
M
I
G
L
T
T
N
M
L
T
M
Y
Q
W
W
R
D
V
I
R
--------
E
S
T
F
Q
G
H
H
-----------
T
P
A
----
V
Q
K
G
L
---------
R
Y
G
M
I
L
F
---
I
I
S
E
V
L
-------
F
-
F
T
G
F
F
W
A
F
-
Y
H
S
S
L
A
P
T
P
E
-------
L
--
G
G
------------------
C
W
P
P
T
G
-----------------------------
I
H
P
--
L
N
----
P
L
E
V
P
L
L
N
T
S
V
L
L
A
S
---------
G
V
S
I
T
W
A
H
H
---------
S
L
M
E
G
D
R
K
H
M
L
Q
A
L
F
I
T
I
T
L
G
V
Y
F
--
T
L
L
Q
A
S
E
Y
Y
E
--
A
P
F
----------
T
I
S
D
---
G
V
Y
G
S
T
----
F
F
V
A
---
T
G
F
H
G
L
--------
H
V
I
I
G
S
T
F
L
I
-
V
C
F
----
F
R
Q
L
K
F
H
F
----------
T
S
N
H
H
F
G
F
---
E
A
G
A
W
Y
W
H
-----------
F
V
D
V
V
W
L
F
L
Y
V
S
--
I
Y
--------------
W
W
G
S
------------------------------------
18
Fugue
72.55
19%
-125
- C8 -
3ES5
-
?
A:
[42-420]
----------------------
M
R
L
G
W
I
D
P
L
P
Q
V
D
T
I
F
P
L
---------
G
L
E
P
N
V
E
S
I
P
A
G
E
V
E
L
D
F
N
-
L
P
E
T
--------
I
A
K
P
F
A
D
T
-----------
V
T
S
----
V
G
D
R
I
QLV
D
D
D
K
E
N
I
A
T
S
I
Y
G
L
S
F
F
K
A
A
R
Q
-------
L
-
Y
S
T
M
L
D
H
E
-
K
A
V
N
-
Q
P
L
K
A
-------
V
Y
Y
D
E
------------------
T
P
I
P
A
H
--------------
M
S
G
A
L
G
I
I
G
H
M
K
-
T
K
V
G
D
--
V
L
VKD
A
G
V
L
F
K
R
G
T
A
A
G
V
T
K
F
---------
S
E
I
D
N
D
K
T
W
NLDCSKLVW
A
D
H
S
S
L
S
M
I
K
R
L
A
S
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K
I
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Q
L
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K
Q
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Y
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T
D
A
Q
G
H
V
Y
S
--
V
S
M
PQLTDQA
L
P
D
Y
Y
D
S
---
I
P
D
V
A
P
N
S
D
Q
L
R
V
L
---
T
A
A
L
Q
MS
L
A
Q
F
R
N
D
E
L
P
H
D
E
D
R
S
D
-
L
L
T
T
L
DL
L
Y
A
D
G
A
Y
E
I
S
A
L
R
D
Q
F
E
L
L
M
A
R
Y
T
T
D
F
K
W
R
V
E
S
I
F
K
V
G
P
P
PAGTTGYG
A
Q
T
V
S
S
T
-
G
N
T
A
--
R
W
Q
F
P
L
S
D
A
D
I
N
I
G
Y
L
F
S
P
S
K
S
-
F
S
L
F
P
K
M
V
G
Y
S
KRA
R
E
D
A
S
A
S
F
A
N
S
DAKKFYAD
20
Fugue
66.35
11%
-111
- C7 -
3B9W
2
?
A:
[8-369]
-----------IN
E
A
R
L
V
A
Q
Y
N
Y
S
I
N
I
L
A
M
L
L
V
G
F
G
F
L
M
V
---------
F
V
R
-
R
Y
G
F
S
A
T
T
G
T
Y
L
V
V
A
-
T
G
L
P
--------
L
Y
I
L
L
R
A
N
GIFGHALTPHS
V
D
A
----
V
I
Y
A
E
---------
F
A
V
A
T
G
L
---
I
A
M
G
A
V
LGRLR
V
F
Q
-
Y
A
L
L
A
L
F
I
-
V
P
V
Y
L
L
N
E
W
L
-------
V
L
D
N
A
SGLTEGFQDSAGSIAI
H
A
F
G
A
Y
F
G
--------------
L
G
V
S
I
-
A
L
T
T
A
A
-
Q
R
A
Q
P
IE
S
D
----
A
T
S
D
R
F
S
M
L
G
S
M
V
L
W
---------
L
F
W
P
S
F
A
T
A
---------
I
V
P
F
E
Q
M
P
Q
T
I
V
N
T
L
L
A
L
C
G
A
T
L
A
T
Y
F
L
S
A
L
F
H
K
G
K
--
A
S
I
----------
V
D
M
A
---
N
A
A
L
A
G
----
G
V
A
I
GSV
C
N
I
V
G
---------
P
V
G
A
F
V
I
G
L
L
-
G
G
A
----
I
S
V
V
G
F
V
F
I
Q
P
M
L
E
S
K
A
K
T
I
D
T
C
G
V
H
---
N
L
H
G
L
P
G
L
-----------
L
G
G
F
S
A
I
L
I
V
P
G
--
I
A
V
A
Q
L
---
T
G
I
G
I
T
L
A
L
A
L
I
G
-
G
V
I
A
G
A
L
I
K
L
T
GTTKQAYEDSHEFIHLAGPEDE
2
PsiBlast_PDB
54.85
36%
-116
- C10 -
3AYG
1
?
A:
[435-488]
---------------------------------------------------
R
-
I
W
Q
I
I
L
V
V
G
M
L
L
W
L
F
-
I
V
F
R
--------
G
-
V
K
R
G
L
K
-----------
R
E
S
DKGG
L
I
H
L
L
---------
F
Y
S
A
I
--------
A
V
P
-------
F
-
F
Y
I
F
A
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
54.78
36%
-114
- C10 -
3AYF
1
?
A:
[435-488]
---------------------------------------------------
R
-
I
W
Q
I
I
L
V
V
G
M
L
L
W
L
F
-
I
V
F
R
--------
G
-
V
K
R
G
L
K
-----------
R
E
S
DKGG
L
I
H
L
L
---------
F
Y
S
A
I
--------
A
V
P
-------
F
-
F
Y
I
F
A
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
52.19
21%
-102
* C9 *
1Z4H
-
TORI_ECOLI
A:
[1-66]
-----------------------------------------------------------------------------------
M
Q
H
E
L
Q
-----------
P
D
S
----
L
V
D
L
K
---------
F
I
M
A
D
T
G
---
F
G
K
T
F
I
-------
Y
-
D
R
I
K
S
G
D
L
P
K
A
K
V
I
H
G
R
A
R
-------
W
L
Y
R
D
------------------
H
C
E
F
K
N
--------------
K
L
L
S
R
-
A
N
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
35.33
36%
72
- C10 -
4ANI
-
DNAK_GEOKA
C:
[330-367]
--------------------------------------------------------------------------------------------------------------------------------------------------------
P
H
-
K
G
V
N
P
D
E
V
V
A
-------
I
---
G
------------------
A
A
I
Q
G
G
--------------
V
I
A
G
E
-
V
K
D
V
V
L
-
L
D
V
T
P
--
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
33.57
36%
76
- C10 -
2V7Y
-
DNAK_GEOKA
A:
[330-367]
--------------------------------------------------------------------------------------------------------------------------------------------------------
P
H
-
K
G
V
N
P
D
E
V
V
A
-------
I
---
G
------------------
A
A
I
Q
G
G
--------------
V
I
A
G
E
-
V
K
D
V
V
L
-
L
D
V
T
P
--
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
30.08
22%
974
- C2 -
2L6W
-
PGFRB_HUMAN
A:
[31-39]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
--
W
Q
K
K
P
R
---
Y
E
---------------------------------------------
15
Fugue
28.37
25%
421
- C1 -
1S5L
-
PSBT_THEEB
T:
[1-11]
------------------------------------------------------------------------------------------------------------
M
E
T
I
---------
T
Y
V
F
I
F
A
---
C
I
I
A
L
F
-------
F
-
F
A
I
F
F
R
E
P
-
P
R
I
T
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
26.57
12%
61
* C10 *
1JB0
-
PSAM_THEEB
M:
[4-29]
----------------------------------------------------------------------------------------
T
-----------
D
T
Q
----
V
Y
V
A
L
---------
V
I
A
L
L
P
A
---
V
L
A
F
R
L
-------
S
-
T
E
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
24.14
18%
177
- C10 -
2LS4
-
A:
[6-22]
----------------------------------------------------------------------------------------------------------------------------
C
I
A
V
---
A
A
G
A
G
T
-------
G
-
Y
F
L
F
S
W
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
14.63
10%
579
- C4 -
1IIJ
-
A:
[9-18]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
I
A
--------------
T
V
V
G
V
-
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
11.23
26%
-
- C5 -
2AXT
-
PSBT_THEEB
T:
[1-1]
------------------------------------------------------------------------------------------------------------
M
E
T
I
---------
T
Y
V
F
I
F
A
---
C
I
I
A
L
F
-------
F
-
F
A
I
F
F
R
E
P
-
P
R
I
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
2.91
43%
1532
- C3 -
1M06
2
VGJ_BPAL3
J:
[13-19]
-------------------------------------------------------------------------------------------------------------------------------------
G
A
R
L
-------
W
-
Y
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------