@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA2356: (2016-04-03 )
MKKTIMASSLAVALGVTGYAAGTGHQAHAAEVNVDQAHLVDLAHNHQDQLNAAPIKDGAYDIHFVKDGFQYNFTSNGTTWSWSYEAANGQTAGFSNVAGADYTTSYNQGSDVQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSSAAQIMAQRTGVSASTWAAIIARESNGQVNAYNPSGASGLFQTMPGWGPTNTVDQQINAAVKAYKAQGLGAWGF
Atome Classification :
(20 SA)
---........--------------.10........20...------.....30........40........---50........60........70........80........90........100.......110.......120.--......130.......140.......150.......160.......170.......180...-----.-----...190-.---------------------------------------------.-----.----.-----.--....200...-..-------..-------------------.-------------------210.-----------.......220..-.-....230.-------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---MKK
T
I
M
A
S
--------------
S
L
A
V
A
LGV
T
G
YAAGTG------HQA
H
A
A
EVNV
D
Q
A
H
L
V
D
L
AHNHQDQ---LNAAPIKDG
A
Y
D
I
H
F
VKDG
F
Q
Y
NFTSNG
T
T
W
S
W
S
Y
EAANGQTAGFSNVAGADYTTSYNQGSDV
Q
S
V
S
Y
NAQSSN--SN
V
E
A
V
SAPTYHNYSTSTTS
S
S
V
R
LSNGNTAGAT
G
S
S
A
A
Q
I
M
A
Q
RTGVS
A
S
T
W
A
A
I
I
A
RESN-----G-----Q
V
N
A
---Y---------------------------------------------N-----P----S-----G--AS
G
L
F
Q-TMP-GW-------GP-------------------T-------------------N-
T
V
-----------
D
Q
Q
I
N
A
A
V
K
A
Y
K-A-QGLGAWGF-------------------------------
9
HHSearch
75.03
27%
-54
- C3 -
1YRO
3
LALBA_MOUSE
A:
[17-105]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
Q
G
I
S
L
L
E
W
A
C
V
L
F
H
T
S
G
-----
Y
-----
D
T
Q
A
---
V
---------------------------------------------
V
-----
N
D
NG-
S
-----
T
--
E
Y
G
L
F
Q
-
I
S
D
R
F
W
-------
C
K
-------------------
S
SEFPESENICGIS
C
D
K
L
L
D
D
-
E
L
-----------
D
D
D
I
A
C
A
K
K
I
L
A
-
I
-
K
G
I
D
Y
W
K
--------------------------------
12
HHSearch
74.98
29%
-66
- C3 -
2Z2F
3
LYSC2_BOVIN
A:
[22-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
S
L
A
N
W
L
C
L
T
K
W
E
S
S
-----
Y
-----
N
T
K
A
---
T
---------------------------------------------
N
-----
Y
----
N
PSSE
S
T
--
D
Y
G
I
F
Q
-
I
N
S
K
W
W
-------
C
N
-------------------
D
GKTPNAVDGCHVS
C
S
E
L
M
E
N
-
D
I
-----------
A
K
A
V
A
C
A
K
H
I
V
S
-
E
-
Q
G
I
T
A
W
V
--------------------------------
10
HHSearch
74.57
31%
-59
- C3 -
1QQY
-
LYSC1_CANFA
A:
[21-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
G
Y
S
L
A
N
W
V
C
M
A
E
Y
E
S
N
-----
F
-----
N
T
Q
A
---
F
---------------------------------------------
N
G
R
NSN
G
----
S
-----
S
--
D
Y
G
I
F
Q
-
L
N
S
K
W
W
-------
C
K
SNSHSSANACNIM
C
S
K
F
L
-
D
-------------------
D
-
N
I
-----------
D
D
D
I
A
C
A
K
R
V
V
K
D
P
-
N
G
M
S
A
W
V
--------------------------------
13
HHSearch
73.45
25%
-56
- C3 -
2FBD
1
LYS1_MUSDO
A:
[19-107]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
E
L
P
Q
W
T
C
I
A
E
H
E
S
S
-----
Y
-----
R
T
N
V
---
V
---------------------------------------------
G
-----
P
TNSN
G
-----
S
N
-
D
Y
G
I
F
Q
-
I
N
N
Y
Y
W
-------
C
Q
P------------------
S
NGRFSYNECHLS
C
D
A
L
L
T-
D
-
N
I
-----------
S
N
S
V
T
C
A
R
K
I
K
S
-
Q
-
Q
G
W
T
A
W
S
T
-------------------------------
32
Fugue
73.23
13%
-18
- C4 -
2P4Z
2
?
A:
[10-284]
HG
S
V
E
V
Q
V
L
I
E
NVVFARN
F
V
A
E
H
G
L
S
L
L
L
K
K
G
N
K
E
I
V
V
D
T
G
QSE
N
F
I
K
N
C
G
L
M
G
I
D
V
G
R
I
K
K
V
V
L
T
H
G
H
Y
D
H
IGG
L
K
G
L
L
E
R
N
P
E
V
K
I
Y
T
H
K
E
I
L
N
K
K
Y
A
M
R
K
G
G
--------
Q
F
E
E
I
G
F
D
L
S
F
Y
E
K
Y
K
N
N
F
V
L
I
D
K
D
A
E
I
E
E
G
F
Y
V
I
T
--
N
------
T
D
I
T
Y
D
N
E
F
T
T
K
N
F
F
V
E
K
E
G
K
R
I
P
D
K
F
L
D
E
V
F
V
V
V
K
E
E
D
G
I
N
V
V
T
G
C
S
H
-
A
G
I
L
N
-----
I
-----
L
E
T
A
---
R
---------------------------------------------
N
-----
R
----
F
-----
G
--
V
S
Y
I
K
S
-
L
I
G
-
G
F
-------
H
L
-------------------
R
-------------------
G
-
M
E
-----------
E
E
K
V
K
D
I
A
R
K
I
E
-
E
-
Y
G
V
K
K
V
L
T
G
HCTG
I
D
E
Y
G
F
L
K
S
V
L
KDKISYLTTS
S
S
I
V
V
8
HHSearch
68.74
24%
-59
- C3 -
2NWD
-
LYSC_HUMAN
X:
[18-111]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
Y
R
G
I
S
L
A
N
W
M
C
L
A
K
W
E
S
G
-----
Y
-----
N
T
R
A
---
T
---------------------------------------------
N
-----
Y
----
N
AGDRS
T
--
D
Y
G
I
F
Q
-
I
N
S
R
Y
W
-------
C
N
D------------------
G
KTPGAVNACHLSCSALLQ-
D
-
N
I
-----------
A
D
A
V
A
C
A
K
R
V
V
R
D
P
-
Q
G
I
R
A
W
V
A
-------------------------------
26
HHSearch
68.52
25%
-49
- C3 -
1QUS
3
MLTB_ECOLI
A:
[100-226]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
L
N
R
A
W
Q
V
Y
G
V
P
P
E
I
I
V
G
I
I
G
V
E
T
R
-----
W
-----
G
R
V
M
---
G
KTR
I
L
D
A
L
A
T
L
S
F
NYPRR
A
E
Y
F
S
G
E
L
E
T
F
L
L
M
A
R
D
E
QDDPLN
L
K
G
S
-----
F
----
A
-----
G
--
A
M
G
Y
G
Q
-
F
M
P
S
S
Y
K
Q
Y----
A
V
-------------------
D
FSGDGHINL----------
W
-
D
P
-----------
V
D
A
I
G
S
V
A
N
Y
F
K
-
A
-
H
G
W
------------------------------------
19
HHSearch
68.02
29%
-58
- C3 -
1LMQ
1
LYSC2_ONCMY
A:
[22-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
S
L
P
N
W
V
C
L
S
K
W
E
S
S
-----
Y
-----
N
T
Q
A
---
T
---------------------------------------------
N
-----
R
N
T--
D
-----
G
S
T
D
Y
G
I
F
Q
-
I
N
S
R
Y
W
-------
C
D
-------------------
D
GRTPGAKNVCGIR
C
S
Q
L
L
-
T
D
D
L
-----------
T
V
A
I
R
C
A
K
R
V
V
L
D
P
-
N
G
I
G
A
W
V
--------------------------------
11
HHSearch
68.02
23%
-68
- C3 -
1IIZ
-
LYS_ANTMY
A:
[19-105]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
N
L
M
R
D
W
V
C
L
V
E
N
E
S
A
-----
R
-----
Y
T
D
K
---
I
---------------------------------------------
A
N
V
N--
K
----
N
-----
G
S
R
D
Y
G
L
F
Q
-
I
N
D
K
Y
W
-------
C
S
-------------------
K
GSTPGKDCNVT
C
S
Q
L
L
T--
D
-
D
I
-----------
T
V
A
S
T
C
A
K
K
I
Y
K
-
R
-
T
K
F
D
A
W
S
G
-------------------------------
17
HHSearch
66.92
26%
-60
- C3 -
2GV0
-
LYSC_PELSI
A:
[22-112]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
G
Y
S
L
G
D
W
V
C
T
A
K
H
E
S
N
-----
F
-----
N
T
A
A
---
T
---------------------------------------------
N
-----
Y
----
N
RGDQ-
S
T
-
D
Y
G
I
L
Q
-
I
N
S
R
W
W
-------
C
N
-------------------
D
GKTPKAKNACGIE
C
S
E
L
L
K
A
-
D
I
-----------
T
A
A
V
N
C
A
K
R
I
V
R
D
P
-
N
G
M
G
A
W
V
A
-------------------------------
15
HHSearch
65.89
21%
-63
- C3 -
1HML
3
LALBA_HUMAN
A:
[39-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
A
L
P
E
L
I
C
T
M
F
H
T
S
G
-----
Y
-----
D
T
Q
A
---
I
---------------------------------------------
V
-----
E
N
N--
E
-----
S
T
-
E
Y
G
L
F
Q
-
I
S
N
K
L
W
-------
C
K
SSQVPQSRNICDISCDKFL
D
-------------------
D
-
D
I
-----------
T
D
D
I
M
C
A
K
K
I
L
D
-
I
-
K
G
I
D
Y
W
L
--------------------------------
16
HHSearch
64.75
21%
-64
- C3 -
1B9O
1
LALBA_HUMAN
A:
[20-105]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
A
L
P
E
L
I
C
T
M
F
H
T
S
G
-----
Y
-----
D
T
Q
A
---
I
---------------------------------------------
V
-----
E
N
D--
E
-----
S
T
-
E
Y
G
L
F
Q
-
I
S
N
K
L
W
-------
C
K
-------------------
S
SQVPQSRNICDISCDKFLD
D
-
D
I
-----------
T
D
D
I
M
C
A
K
K
I
L
D
-
I
-
K
G
I
D
Y
W
L
--------------------------------
24
HHSearch
63.84
24%
-55
- C3 -
1QSA
5
SLT_ECOLI
A:
[454-536]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
D
L
F
K
R
Y
T
S
G
K
E
I
P
Q
S
Y
A
M
A
I
A
R
Q
E
S
A
-----
W
-----
N
P
K
V
---
K
---------------------------------------------
S
-----
P
----
V
-----
G
--
A
S
G
L
M
Q
-
I
M
P
G
T
A
T
H
T
V
K
M
F
S
I
PGYSSPGQ-----------
L
-------------------
L
-
D
P
-----------
E
T
N
I
N
I
G
T
S
Y
L
Q
-
Y
----------------------------------------
14
HHSearch
63.63
22%
-63
- C3 -
1JUG
1
LYSC1_TACAC
A:
[17-110]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
G
Y
Q
H
I
T
L
P
N
W
V
C
T
A
F
H
E
S
S
-----
Y
-----
N
T
R
A
---
T
---------------------------------------------
N
-----
H
N
TDG
S
-----
T
--
D
Y
G
I
L
Q
-
I
N
S
R
Y
W
-------
C
H
D------------------
G
KTPGSKNACNIS
C
S
K
L
L
D-
D
-
D
I
-----------
T
D
D
L
K
C
A
K
K
I
A
G
-
E
A
K
G
L
T
P
W
V
A
-------------------------------
25
HHSearch
57.11
24%
-47
- C3 -
3GXR
2
?
A:
[45-123]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
K
S
F
I
N
N
V
A
K
K
H
V
V
D
P
A
V
I
A
A
I
I
S
R
E
S
R
AGNVI
F
-----
N
T
T
P
PGW
G
---------------------------------------------
D
-----
N
----
Y
-----
N
--
G
F
G
L
M
Q
-
V
D
K
R
Y
H
-------
E
P
RG-----------------
A
-------------------
W
-
N
S
-----------
E
E
H
I
D
Q
A
T
G
I
L
V
------------------------------------------
20
HHSearch
54.42
20%
-39
* C3 *
1GBS
-
LYG_CYGAT
A:
[47-122]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Y
K
T
I
I
K
K
V
G
E
K
L
C
V
E
P
A
V
I
A
G
I
I
S
R
E
S
H
-----
A
-----
G
K
V
L
---
K
---------------------------------------------
N
GWGD-
R
----
G
-----
N
--
G
F
G
L
M
Q
-
V
D
K
R
S
H
-------
K
P
QG-----------------
T
-------------------
W
-
N
G
-----------
E
V
H
I
T
Q
G
T
T
I
L
T
-
D
----------------------------------------
29
Fugue
52.73
20%
-25
- C3 -
1XSF
-
A:
[1-108]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
V
V
T
P
A
H
E
A
V
V
R
V
G
T
K
P
G
T
E
V
P
P
V
I
D
G
S
I
W
D
A
I
A
G
C
E
A
G
-----
G
-----
N
W
A
I
---
N
---------------------------------------------
T
-----
G
----
N
-----
G
--
Y
Y
G
G
V
Q
F
D
Q
G
-
T
W
-------
E
A
-------------------
N
-------------------
G
-
G
L
RYAPRADLAT
R
E
E
Q
I
A
V
A
E
V
T
R
L
-
R
-
Q
G
W
G
A
W
P
V
C
A
A
R
A
GAR-----------------------
21
HHSearch
52.66
22%
-13
- C3 -
3W6B
1
?
A:
[54-128]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
G
G
D
F
A
L
L
L
S
A
V
I
K
K
E
S
Y
-----
F
-----
G
D
G
L
S--
G
---------------------------------------------
S
-----
P
----
S
-----
A
--
G
D
G
L
M
Q
-
V
E
P
N
T
R
N
A
Y
L
S
Q
F
S
A
K
YGHAYN------------
H
-------------------
S
-
S
E
-----------
Q
D
Q
V
Y
M
G
S
L
I
L
N
-
E
----------------------------------------
38
Fugue
51.41
11%
-14
* C4 *
4FYM
-
?
G:
[9-260]
EFL
C
D
E
E
I
Y
K
S
--------------
F
V
H
L
K
D
K
I
C
E
E
R
K
K
K
E
------
L
V
S
Y
S
S
Y
I
K
E
M
K
K
L
L
K
V
V
L
L
K
Y
-------
K
A
L
K
F
R
K
S
N
Y
---
F
F
S
S
G
V
L
N
N
I
V
S
S
N
I
I
C
F
L
L
S
E
L
I
L
K
N
K
L
S
F
D
Y
L
L
G
A
----
S
Y
K
G
I
P
M
V
S
L
T
S
H
F
L
F
E
S
K
KY
S
N
I
F
Y
L
Y
D
R
V
I
V
G
N
L
D
D
E
K
K
N
I
I
I
I
D
D
V
F
T
C
G
T
A
L
T
E
I
L
A
K
L
K
T
Y
E
H
L
K
V
V
A
F
I
V
L
L
N
R
N
E
Y
-----
E
-----
I
N
E
N
---
N
---------------------------------------------
Q
-----
K
----
I
-----
Y
--
F
K
D
I
F
E
-
K
R
V
-
G
I
-------
P
L
-------------------
Y
-------------------
S
-
I
L
-----------
S
Y
K
D
D
I
Q
S
M
I
--------------------------------------------
35
Fugue
48.67
18%
-79
- C5 -
1E68
-
?
A:
[1-70]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
K
E
F
G
I
P
A
A
V
A
G
T
V
L
N
V
V
E
A
-----
G
GWV
T
T
I
V
S
I
---
L
---------------------------------------------
T
-----
A
----
V
-----
G
--
S
G
G
L
---
S
L
L
-
A
A
-------
A
G
-------------------
R
-------------------
E
-
S
I
-----------
K
A
Y
L
K
K
E
I
K
K
K
G
-
K
-
R
A
V
I
A
W
---------------------------------