@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0115: (2015-12-12 )
MPKMKTNRGASKRFKVKKNLIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNAHSVMSLLCRA
Atome Classification :
(13 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......---..10..---.------.....-20------.-..-------...-----...30-----........-.40-..---.....--.50-.--------.------......60...-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPKMKTN---RGAS
K
R
---
F
------
K
V
K
K
N
-
L
-------
I
-KR-------G
S
A
-----
F
K
S
H
------ILTKKSPK-RKA-NL---NAPKH--VHH-T--------
N
------
A
H
S
V
M
S
L
L
CRA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
81.07
31%
25
- C4 -
3SZE
-
ESPP_ECO57
A:
[910-956]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
T
N
---
L
S
E
S
D
K
---
L
------
E
V
K
K
H
-
L
-------
S
-
G
E
-------
N
N
I
-----
L
L
V
D
------
F
L
Q
K
P
T
P
E
-
K
Q
L
-
N
I
E
L
V
S
A
P
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
80.08
26%
-17
- C5 -
4CGY
1
TOP3A_HUMAN
A:
[22-640]
FS
R
A
A
M
E
M
A
L
RGVR
K
V
L
C
V
A
EK
N
D
A
A
K
G
I
A
D
L
L
S
N
GR
M
R
R
R
E
G
LSKF
N
K
I
Y
E
F
D
Y
H
L
YG
Q
N
V
T
M
V
M
T
S
V
SGHL
L
A
H
D
F
Q
MQFRKWQSCNPLVLFE
A
E
I
E
K
Y
C
P
ENF
V
D
I
K
K
T
L
E
R
E
T
R
Q
CQ
A
L
V
I
WTDCD
R
E
G
E
N
I
G
F
E
I
I
H
V
C
K
A
V
KPN
L
Q
V
L
R
A
R
F
SEIT
P
H
A
V
R
T
A
C
E
N
LTEPD
Q
R
V
S
D
A
V
D
V
R
Q
E
L
D
L
R
I
G
A
A
F
T
R
F
Q
T
L
R
L
Q
R
I
F
PEVLAEQLISYG
S
C
Q
F
P
T
L
G
F
V
V
E
R
F
K
A
I
Q
A
F
V
P
E
I
F
H
R
I
K
V
T
H
D
H
KD
G
I
V
E
F
N
W
KRHRLFN
H
T
A
C
L
V
L
Y
Q
L
C
V
E
DP
M
A
T
V
VEV
R
S
K
P
K
S
K
W
R
P
QALD
T
V
E
L
E
K
L
A
S
R
K
LRIN
A
K
E
T
M
R
I
A
E
K
L
Y
T
Q
GYIS
Y
P
R
T
E
T
N
IFP
R
D
L
N
L
T
---
V
------
L
V
E
Q
Q
-
T
-------
P
D
P
R
-------
W
G
A
-----
F
A
Q
S
------
I
L
E
R
G
G
P
T
P
R
N
G
-
N
K
---
S
D
Q
A
H
PP
I
H
P
-
T
KYTNNLQG
D
------
E
Q
R
L
Y
E
F
I
V
R
H
F
L
A
C
C
S
Q
D
A
Q
G
Q
E
T
T
V
E
I
D
I
AQ
E
R
F
V
A
H
G
L
M
I
LAR
N
Y
L
D
V
Y
PY
D
H
W
S
D
KILPVYEQG
S
H
F
Q
P
STVEM
V
D
G
E
T
S
P
P
KLLT
E
A
D
L
I
A
L
M
E
K
H
GIGTDAT
H
A
E
H
I
E
T
I
K
A
R
MY
V
G
L
T
PDK
R
F
L
P
G
H
L
G
M
G
L
V
E
G
Y
D
S
MGYEMSKP
D
L
R
A
E
L
E
A
D
L
K
L
I
C
D
GKKD
K
F
V
V
L
R
Q
Q
V
Q
K
Y
K
Q
V
F
I
E
A
V
A
K
A
K
K
L
D
E
A
L
A
Q
Y
FGNGT
18
Fugue
78.71
17%
-44
- C6 -
1PU1
-
Y677_METTH
A:
[1-91]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
R
K
L
T
---
E
G
D
L
D
E
---
I
S
S
F
L
H
N
T
I
S
D
F
-
I
-------
L
-
K
R
-------
V
S
A
KEIV
D
I
D
I
T
------
V
L
V
E
Y
T
D
E
-
L
K
V
-
D
I
---
S
A
E
L
Y
--
L
D
E
-
L
--------
S
D
A
D
PG
I
V
D
E
A
V
D
A
A
Y
R
S
L
E
S
F
L
D
G
F
RE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
54.72
6%
-0
- C7 -
1UB4
-
C:
[402-476]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
H
S
S
V
K
R
---
W
G
N
S
P
A
---
V
------
R
I
P
A
T
-
L
-------
M
-
Q
A
-------
L
N
L
-----
N
I
D
D
------
E
V
K
I
D
L
V
D
-
G
K
L
-
I
I
---
E
P
V
R
K
--
E
P
V
-
F
--------
T
------
L
A
E
L
V
N
D
I
T
P
E
NLHENIDWGEP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
52.87
24%
107
- C3 -
3G1J
-
?
A:
[0-89]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GVD
R
D
Y
L
Q
S
E
---
Y
G
V
L
K
A
G
Q
C
Y
------
K
V
V
R
S
-
F
R
D
YRN
I
N
Y
-
E
R
G
D
V
M
R
F
L
G
S
N
-----
F
V
P
Y
ES
G
L
S
L
F
F
D
K
N
G
S
E
-
R
Q
I
M
L
C
---
V
R
P
E
F
----
Q
M
E
--------
I
------
A
H
H
L
D
S
Y
F
C
K
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
49.86
37%
37
- C8 -
2VQE
-
RS20_THET2
T:
[8-31]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
N
---
L
S
A
L
K
R
---
H
------
R
Q
S
L
K
-
R
-------
R
-
L
R
-------
N
K
A
-----
K
K
S
A
------
I
K
T
L
S
K
K
A
-
V
Q
L
-
A
Q
---
E
G
K
A
E
--
E
A
L
-
K
--------
I
------
M
R
K
A
E
S
L
I
D
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
45.24
27%
10
- C2 -
1WA7
-
B:
[1-22]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
D
P
G
------
M
P
T
P
P
L
P
P
-
R
P
A
-
N
L
---
G
E
R
Q
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
43.89
18%
107
* C7 *
1R7L
-
?
A:
[-6-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AMK
P
R
D
I
N
K
L
I
A
S
K
I
FG
Y
E
I
K
DD
N
I
I
K
DG
R
Y
R
L
G
I
P
L
Y
S
Q
N
---
I
E
S
A
W
Q
---
V
------
V
E
K
L
E
---------------------
Y
D
-----
V
K
V
T
------
K
-
T
D
L
K
P
K
-
Y
Q
V
-
H
V
---
F
V
P
G
G
--
V
K
M
-
V
--------
F
------
A
E
T
A
P
M
A
I
C
K
G
A
L
A
S
V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
39.02
11%
9
* C8 *
2KWY
-
A:
[1-43]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
-------
N
A
G
-----
G
V
G
E
------
L
E
K
K
A
E
A
G
-
V
Q
G
-
E
L
---
A
E
I
K
K
--
I
A
E
-
K
--------
K
------
K
D
D
V
V
K
I
L
I
E
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
31.18
23%
68
- C8 -
2YKR
-
RS20_ECOLI
T:
[3-15]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
---
K
S
A
K
K
R
---
A
------
I
Q
S
E
K
-
A
-------
R
-
K
H
-------
N
A
S
-----
R
R
S
M
------
M
R
T
F
I
K
K
V
-
Y
A
A
-
I
E
---
A
G
D
K
A
--
A
A
Q
-
K
--------
A
------
F
N
E
M
Q
P
I
V
D
R
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
24.30
6%
31
- C9 -
3SOL
1
?
A:
[13-30]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
S
A
T
R
-------
Y
-
L
K
-------
M
R
C
-----
N
R
S
D
------
L
P
D
E
Q
S
I
L
-
N
V
A
-
N
R
---
I
A
I
G
K
--
G
W
Q
-
S
--------
L
------
T
Q
E
D
I
R
K
H
S
D
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
19.58
17%
7
* C9 *
3C8L
1
?
A:
[69-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
------
E
E
E
V
L
A
V
L
P
F
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
12.69
6%
68
- C1 -
2RB6
-
?
A:
[62-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
M
--
I
K
Q
-
E
--------
D
------
V
T
Q
I
I
E
R
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------