@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0874: (2016-03-19 )
MDIEKISFSLISLAGDSFSKLIEALQAAKESDSELVEQLLKEADDLMIEAHKVQTEMLIQETRGEQANFSVLLVHAQDTLMNTILASTLIREMIEMHQEIKTLRKEEEK
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20....----------....30........40.---......---.50....-------....60....-....70.......--------.80...-----------..--...90........100.......----------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDIE
K
I
S
F
S
L
I
SLA
G
D
S
F
S
K
L
I
E
A
L
----------
Q
A
AKES
D
S
E
L
V
E
Q
L
L
K
E
---
A
D
D
L
M
I
---
E
A
H
K
V
Q
T
-------
E
M
L
I
Q
ETRGE-QA
N
F
S
V
L
L
V
H
A
Q
D
--------
T
L
M
N
T
I
-----------
L
A
--
S
T
L
I
R
E
M
I
E
M
H
Q
E
I
K
T
L
R
K
EEEK----------
22
HHSearch
95.09
38%
-87
- C2 -
2E2A
-
PTLA_LACLL
A:
[4-104]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
M
T
L
L
G
F
E
I
V
A
Y
A
G
D
A
R
S
K
L
L
E
A
L
----------
K
A
A
E
N
G
D
F
A
K
A
D
S
L
V
V
E
---
A
G
S
C
I
A
---
E
A
H
S
S
Q
T
-------
G
M
L
A
R
E
A
S
G
E
-
E
L
P
Y
S
V
T
M
M
H
G
Q
L
--------
H
L
M
T
T
I
-----------
L
L
--
K
D
V
I
H
H
L
I
E
L
Y
K
R
G
A
------------------
33
Fugue
94.80
39%
-91
- C2 -
1E2A
1
PTLA_LACLL
A:
[1-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MN
R
E
E
M
T
L
L
G
F
E
I
V
A
Y
A
G
D
A
R
S
K
L
L
E
A
L
----------
K
A
A
E
N
G
D
F
A
K
A
D
S
L
V
V
E
---
A
G
S
C
I
A
---
E
A
H
S
S
Q
T
-------
G
M
L
A
R
E
A
S
G
E
-
E
L
P
Y
S
V
T
M
M
H
G
Q
D
--------
H
L
M
T
T
I
-----------
L
L
--
K
D
V
I
H
H
L
I
E
L
Y
K
R
--------------------
6
PsiBlast_PDB
93.08
36%
-109
- C2 -
2WY2
1
PTQA_ECOLI
A:
[3-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
L
----------
K
Q
A
K
Q
G
D
F
A
A
A
K
A
M
M
D
Q
---
S
R
M
A
L
N
---
E
A
H
L
V
Q
T
-------
K
-
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
H
A
Q
L
--------
H
L
M
T
S
M
-----------
L
A
--
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
-----------------
5
PsiBlast_PDB
92.67
36%
-98
- C2 -
1WCR
-
PTQA_ECOLI
A:
[3-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
L
----------
K
Q
A
K
Q
G
D
F
A
A
A
K
A
M
M
D
Q
---
S
R
M
A
L
N
---
E
A
H
L
V
Q
T
-------
K
-
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
H
A
Q
L
--------
H
L
M
T
S
M
-----------
L
A
--
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
-----------------
18
PsiBlast_CBE
92.52
36%
-109
- C2 -
2WY2
1
PTQA_ECOLI
C:
[3-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
L
----------
K
Q
A
K
Q
G
D
F
A
A
A
K
A
M
M
D
Q
---
S
R
M
A
L
N
---
E
A
H
L
V
Q
T
-------
K
-
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
H
A
Q
L
--------
H
L
M
T
S
M
-----------
L
A
--
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
-----------------
3
PsiBlast_PDB
92.13
39%
-85
- C2 -
3K1S
5
?
A:
[9-105]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
I
P
F
Q
L
I
L
N
S
G
N
A
R
S
F
A
M
E
A
L
----------
Q
F
A
K
Q
G
K
M
A
E
A
D
E
A
M
V
K
---
A
K
E
A
I
N
---
E
A
H
H
F
Q
T
-------
E
L
I
Q
S
E
A
R
G
E
-
K
T
E
I
S
V
L
L
I
H
A
Q
D
--------
H
L
M
N
A
I
-----------
T
V
--
K
E
L
A
A
E
F
I
D
L
Y
K
K
L
-------------------
8
PsiBlast_PDB
92.11
35%
-109
- C2 -
2WWV
-
PTQA_ECOLI
A:
[3-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
L
----------
K
Q
A
K
Q
G
D
F
A
A
A
K
A
M
M
D
Q
---
S
R
M
A
L
N
---
E
A
H
L
V
Q
T
-------
K
-
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
E
A
Q
L
--------
H
L
M
T
S
M
-----------
L
A
--
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
-----------------
7
PsiBlast_PDB
92.00
36%
-99
- C2 -
2LRL
1
PTQA_ECOLI
A:
[3-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
L
----------
K
Q
A
K
Q
G
D
F
A
A
A
K
A
M
M
D
Q
---
S
R
M
A
L
N
---
E
A
H
L
V
Q
T
-------
K
-
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
H
A
Q
L
--------
H
L
M
T
S
M
-----------
L
A
--
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
-----------------
19
PsiBlast_CBE
91.93
36%
-101
- C2 -
2LRL
1
PTQA_ECOLI
C:
[3-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
L
----------
K
Q
A
K
Q
G
D
F
A
A
A
K
A
M
M
D
Q
---
S
R
M
A
L
N
---
E
A
H
L
V
Q
T
-------
K
-
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
H
A
Q
L
--------
H
L
M
T
S
M
-----------
L
A
--
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
-----------------
2
PsiBlast_PDB
91.75
40%
-95
- C2 -
2E2A
-
PTLA_LACLL
A:
[9-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
F
E
I
V
A
Y
A
G
D
A
R
S
K
L
L
E
A
L
----------
K
A
A
E
N
G
D
F
A
K
A
D
S
L
V
V
E
---
A
G
S
C
I
A
---
E
A
H
S
S
Q
T
-------
G
M
L
A
R
E
A
S
G
E
-
E
L
P
Y
S
V
T
M
M
H
G
Q
L
--------
H
L
M
T
T
I
-----------
L
L
--
K
D
V
I
H
H
L
I
E
L
Y
K
---------------------
21
HHSearch
91.74
38%
-79
- C2 -
3K1S
5
?
A:
[6-108]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
A
E
Q
I
P
F
Q
L
I
L
N
S
G
N
A
R
S
F
A
M
E
A
L
----------
Q
F
A
K
Q
G
K
M
A
E
A
D
E
A
M
V
K
---
A
K
E
A
I
N
---
E
A
H
H
F
Q
T
-------
E
L
I
Q
S
E
A
R
G
E
-
K
T
E
I
S
V
L
L
I
H
A
Q
D
--------
H
L
M
N
A
I
-----------
T
V
--
K
E
L
A
A
E
F
I
D
L
Y
K
K
L
E
A
K
----------------
9
PsiBlast_PDB
91.02
35%
-101
- C2 -
2LRK
-
PTQA_ECOLI
A:
[3-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
L
----------
K
Q
A
K
Q
G
D
F
A
A
A
K
A
M
M
D
Q
---
S
R
M
A
L
N
---
E
A
H
L
V
Q
T
-------
K
-
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
E
A
Q
L
--------
H
L
M
T
S
M
-----------
L
A
--
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
-----------------
1
PsiBlast_PDB
90.95
41%
-94
- C2 -
1E2A
1
PTLA_LACLL
A:
[9-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
F
E
I
V
A
Y
A
G
D
A
R
S
K
L
L
E
A
L
----------
K
A
A
E
N
G
D
F
A
K
A
D
S
L
V
V
E
---
A
G
S
C
I
A
---
E
A
H
S
S
Q
T
-------
G
M
L
A
R
E
A
S
G
E
-
E
L
P
Y
S
V
T
M
M
H
G
Q
D
--------
H
L
M
T
T
I
-----------
L
L
--
K
D
V
I
H
H
L
I
E
L
Y
K
---------------------
17
PsiBlast_CBE
90.14
41%
-83
- C2 -
1E2A
1
PTLA_LACLL
B:
[9-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
F
E
I
V
A
Y
A
G
D
A
R
S
K
L
L
E
A
L
----------
K
A
A
E
N
G
D
F
A
K
A
D
S
L
V
V
E
---
A
G
S
C
I
A
---
E
A
H
S
S
Q
T
-------
G
M
L
A
R
E
A
S
G
E
-
E
L
P
Y
S
V
T
M
M
H
G
Q
D
--------
H
L
M
T
T
I
-----------
L
L
--
K
D
V
I
H
H
L
I
E
L
Y
K
---------------------
16
PsiBlast_CBE
89.06
41%
-93
- C2 -
1E2A
1
PTLA_LACLL
C:
[9-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
F
E
I
V
A
Y
A
G
D
A
R
S
K
L
L
E
A
L
----------
K
A
A
E
N
G
D
F
A
K
A
D
S
L
V
V
E
---
A
G
S
C
I
A
---
E
A
H
S
S
Q
T
-------
G
M
L
A
R
E
A
S
G
E
-
E
L
P
Y
S
V
T
M
M
H
G
Q
D
--------
H
L
M
T
T
I
-----------
L
L
--
K
D
V
I
H
H
L
I
E
L
Y
K
---------------------
20
HHSearch
88.32
33%
-93
- C2 -
1WCR
-
PTQA_ECOLI
A:
[2-102]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
L
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
L
----------
K
Q
A
K
Q
G
D
F
A
A
A
K
A
M
M
D
Q
---
S
R
M
A
L
N
---
E
A
H
L
V
Q
T
-------
K
L
I
E
G
D
A
G
E
G
-
K
M
K
V
S
L
V
L
V
H
A
Q
L
--------
H
L
M
T
S
M
-----------
L
A
--
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
------------------
4
PsiBlast_PDB
82.89
34%
-88
- C2 -
3L8R
-
?
A:
[10-102]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
E
I
I
L
N
S
G
N
A
R
S
I
V
H
E
A
F
----------
D
A
M
R
E
K
N
Y
I
L
A
E
Q
K
L
Q
E
---
A
N
D
E
L
L
---
K
A
H
Q
A
Q
T
-------
D
L
L
Q
E
Y
A
S
G
T
-
E
I
K
I
E
I
I
M
V
H
A
Q
D
--------
H
L
M
T
T
M
-----------
T
L
--
R
E
V
A
I
E
M
L
E
L
Y
K
K
--------------------
23
HHSearch
81.61
32%
-89
* C2 *
3L8R
-
?
A:
[4-102]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
L
Q
V
A
A
F
E
I
I
L
N
S
G
N
A
R
S
I
V
H
E
A
F
----------
D
A
M
R
E
K
N
Y
I
L
A
E
Q
K
L
Q
E
---
A
N
D
E
L
L
---
K
A
H
Q
A
Q
T
-------
D
L
L
Q
E
Y
A
S
G
T
-
E
I
K
I
E
I
I
M
V
H
A
Q
D
--------
H
L
M
T
T
M
-----------
T
L
--
R
E
V
A
I
E
M
L
E
L
Y
K
K
--------------------
38
Fugue
64.96
15%
-79
- C2 -
4Y21
-
?
A:
[1-539]
G
K
E
R
F
V
K
L
L
D
Q
L
H
N
S
L
R
I
D
L
S
M
YRNNFPASS
P
E
R
L
Q
D
L
K
S
T
V
D
L
L
T
S
I
T
F
F
R
M
K
V
QELQSPPR
A
S
Q
V
V
K
D
C
V
K
A
C
L
N
S
T
Y
E
Y
I
F
N
N
C
H
E
L
Y
G
R
EYQTDPAKKGEVPPEEQGPSIKNL
D
F
W
S
K
L
I
T
L
I
V
S
I
I
E
E
D
K
N
S
Y
T
P
C
L
NQFPQELN
V
G
K
I
S
A
E
V
M
W
S
L
F
A
Q
D
M
K
Y
A
M
E
E
H
D
K
HRLCK
S
A
D
Y
M
N
L
H
F
K
V
K
W
L
Y
N
E
YVAELPTFKDRVPE
Y
P
A
W
F
E
P
F
V
I
Q
W
L
D
E
N
E
E
V
S
R
D
F
L
H
G
A
L
E
R
D
K
K
D
GFQQTSEHALFS
C
S
V
V
D
V
F
S
Q
L
N
Q
S
F
E
I
I
K
K
L
ECPD
P
Q
I
V
G
H
Y
M
R
R
F
A
K
T
I
S
N
V
L
L
Q
Y
A
D
I
V
S
K
D
FASYCSKEK
E
K
V
P
C
I
L
M
N
N
T
Q
Q
L
R
V
Q
L
E
K
M
F
E
A
M
GGKELD
A
E
A
S
G
T
L
K
E
L
Q
V
K
L
N
N
V
L
D
E
L
S
H
V
F
A
T
S
F
Q
P
H
I
E
E
C
V
R
Q
M
G
D
I
L
S
Q
VKGTGNVPASACSS
V
A
Q
D
A
D
N
V
L
Q
P
I
M
D
L
L
D
S
N
L
T
L
F
A
K
I
C
E
K
--------
T
V
L
K
R
V
L
K
E
L
W
K
L
V
M
N
T
---
M
E
R
T
I
V
L
P
P
E
F
S
K
L
K
D
-------
H
M
V
R
E
E
A
K
S
L
-
T
P
K
Q
C
A
V
V
E
L
A
L
D
--------
T
I
K
Q
Y
F
-----------
H
A
GG
V
G
L
K
K
T
F
L
E
K
S
P
D
L
Q
S
L
R
Y
A
L
S
L
Y
T
QATDLLIK
42
Fugue
60.66
13%
-91
- C1 -
2FZ0
-
NYV1_YEAST
A:
[1-149]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
R
F
N
V
S
Y
V
E
V
I
K
N
G
E
T
I
S
S
C
F
Q
P
F
QKNENYGTIT
S
A
N
E
Q
I
T
P
V
I
F
H
N
L
I
M
D
MVL
P
K
V
V
P
I
---
K
G
N
K
V
T
K
MSMNLID
G
F
D
C
F
Y
S
T
D
D
-
H
D
P
K
T
V
Y
V
C
F
T
L
V
DIPKI
L
P
I
R
I
L
S
G
L
Q
E
Y
ESNATNEL
L
S
--
S
H
V
G
Q
I
L
D
S
F
H
E
E
L
V
E
Y
R
N
Q
T
L
N
S---------