@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo1869: (2016-03-29 )
MRIGMRTVKTAIAATLAIILAEWLHLEYAVSAGIIAILSVQNTKKGSLQLAIQRVYSTVLALSIAAVFFMLIGYNAVSFGLYLLIFIPLAVRLHVADGIVVSSVLVSHILLEQSLSFFWFKNELLLMAVGAGIAIILNLYMPKMEDELKRSQQKIEAIMRQILTEMTQGLRNQSEYHDEFGLLNQLKGTLDYAQEKAARNLDNQFFASSHYYSQYVDMRLVQYRILTQMKRHLVAFDHSSEQSMALAEITEKTAQTLDEHNTAEDLVAEITKMVHEFRSSKLPETRAEFENRAILFQFMNDLRYLLEMKRDFYAEFGLKEKEMTRGR
Atome Classification :
(20 SA)
----------------------------------.........10.---.......20........30.----------------.....-------..40........---------50..----....--..60........70-........80........90...-.....100.-----------------......110-----.......120.......130.......140......-----------------.150.......160.......170.......180------.....----...190.......200..--.....210---.......220.......230----.....-..240.......250..----------.....---------------260...--....270.......280-----.--.......290..--.....-300.......310.......320.....--
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------MRI
G
M
R
T
V
K
T
A
I
---
A
A
T
L
A
I
I
L
A
E
W
L
H
L
E
Y
A
VSA----------------
G
I
I
A
I
-------
L
S
VQNTKK
G
S
L
Q
---------
L
A
I
Q
----
R
V
Y
S
--
T
V
L
A
L
S
I
A
A
V
F
F
M
L
-
I
G
Y
N
A
V
S
F
G
L
Y
L
L
I
F
I
P
L
A
V
R
L
H
-VAD
G
I
V
V
S
S
-----------------
V
L
V
S
H
I
L
L
E
-----QS
L
S
F
F
WFKN
E
L
L
L
M
AVG
A
G
I
A
I
I
L
N
L
YMP
K
M
E
D
E
L
-----------------
K
R
S
Q
Q
K
I
E
A
I
M
R
Q
I
L
T
E
M
T
Q
GLRN
Q
S
E
Y
H
D
E
F
G
-------
L
L
N
Q
L
----
K
G
T
L
D
Y
A
Q
E
K
A
A
R
NLD
N
Q
--
F
FAS
S
H
Y
Y
---
S
Q
Y
V
D
M
R
L
V
Q
Y
R
I
L
T
Q
M
K
R
H
----
L
V
AFD-HSSEQ
S
M
A
L
A
E
I
T
E
K
T
A
----------
Q
T
L
DE---------------HN
T
A
E
D
--
L
V
A
E
I
T
K
M
V
H
E
F
R
SSK------L--P
E
T
R
A
E
FEN
R
A
I
--
L
F
Q
F
M
-
N
D
L
R
Y
L
L
E
M
K
R
D
F
Y
A
EFGLK
E
K
E
MTRGR--
13
HHSearch
86.74
21%
-64
- C6 -
3KMI
-
?
A:
[6-174]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
H
K
I
-----------------
H
E
V
Q
K
K
L
Q
E
E
V
S
I
V
L
I
D
I
A
D
I
I
V
N
P
K
K
E
N
G
Y
S
R
-------
D
L
Y
T
L
----
N
S
L
I
D
S
S
I
S
E
T
Y
D
N
I
N
N
T
--
L
L
S
D
T
R
F
F
---
L
E
H
M
D
I
I
K
S
Q
R
D
I
L
E
N
L
Y
S
Y
----
V
S
Q
L
N
-
S
T
P
P
Q
A
H
I
L
S
A
F
I
H
K
I
G
----------
Y
T
E
F
E
---------------
A
E
T
G
N
L
--
L
L
E
E
L
K
R
L
M
I
S
M
K
N
Q
P
------
L
--
P
V
D
R
T
E
F
E
N
R
A
I
--
L
F
L
C
L
-
T
E
L
K
Q
F
L
V
N
R
K
H
A
-----------------
1
PsiBlast_PDB
82.12
22%
-66
- C6 -
3KMI
-
?
A:
[9-168]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
H
E
V
Q
-----------------
K
K
L
Q
E
E
V
S
I
V
L
I
D
I
-
A
D
I
I
V
N
P
K
K
E
N
G
Y
S
R
D
L
Y
-------
T
L
N
S
L
-------
I
D
S
S
I
S
E
T
Y
D
N
I
N
N
T
--
L
L
S
D
T
R
F
F
---
L
E
H
M
D
I
I
K
S
Q
R
D
I
L
E
N
L
Y
S
Y
----
V
S
Q
L
N
-
S
T
P
P
Q
A
H
I
L
S
A
F
I
H
K
I
G
----------
Y
T
E
F
E
---------------
A
E
T
G
N
L
--
L
L
E
E
L
K
R
L
M
I
S
M
K
N
Q
P
------
L
--
P
V
D
R
T
E
F
E
N
R
A
I
--
L
F
L
C
L
-
T
E
L
K
Q
F
L
-----------------------
23
Fugue
65.51
21%
-90
- C4 -
1ZR6
7
?
A:
[3-481]
EAEFN
S
I
N
A
C
L
A
A
A
D
V
E
F
H
E
EDS
E
G
W
D
M
D
G
TAFN
L
R
V
D
Y
D
P
A
A
I
A
I
P
RS
T
E
D
I
A
A
A
V
Q
C
G
L
D
A
G
V
Q
I
S
A
K
G
GGHSYGSYGFGGED
G
H
L
M
L
ELDRM
Y
R
V
S
V
D
D
N
N
V
A
T
I
Q
GGAR
L
G
Y
T
A
L
E
L
L
D
Q
GN
R
A
L
S
H
G
T
C
P
A
V
G
V
G
G
H
V
L
G
G
G
Y
G
F
A
T
H
T
H
G
L
T
L
D
W
L
I
G
A
T
V
V
L
A
-
D
A
S
I
V
H
V
S
E
TEN
A
D
L
F
W
A
L
R
G
GGGGF
A
I
V
S
E
F
E
F
N
T
F
EAP
E
I
I
T
T
Y
Q
V
T
T
T
W
N
R
K
Q
H
V
A
G
L
K
A
L
Q
D
W
A
Q
N
T
M
P
R
E
L
S
M
R
L
E
I
N
AN
A
L
N
W
E
G
N
F
F
G
N
A
K
D
L
K
K
I
L
Q
P
I
M
K
K
A
--
G
G
K
S
T
I
S
K
L
V
E
T
D
-------
W
Y
G
Q
I
----
N
T
Y
L
Y
G
A
D
L
N
I
T
Y
N
Y
D
V
H
E
Y
F
Y
A
N
S
L
T
A
P
RL
S
D
E
A
I
Q
A
F
V
D
Y
K
F
D
N
S
S
V
R
P
G
R
G
W
W
I
Q
W
D
F
H
G
G
K
N
S
A
L
A
A
V
S
N
D
E
T
A
YAHRDQL
W
L
W
Q
F
Y
D
S
I
YDYENNTSPYPESG
F
E
F
M
Q
G
--
F
V
A
T
I
E
D
T
L
P
E
D
R
K
G
K
Y
FNYAD
T
--
T
L
T
K
E
E
A
Q
K
L
Y
W
------
R
-
G
N
L
E
K
L
Q
A
I
K
A
K
Y
D
P
E
D
V
F
G
N
V
V
S
V
E
P
I
AY
28
Fugue
61.91
12%
-17
- C4 -
3HHC
9
IFNL3_HUMAN
A:
[34-196]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
G
C
H
I
A
Q
F
K
S
L
S
P
Q
E
L
Q
-------
A
F
K
R
A
----
K
D
A
L
E
E
S
L
L
L
K
D
C
K
C
R
S
R
--
L
F
P
R
T
W
D
L
---
R
Q
-
L
Q
V
R
E
R
P
V
A
L
E
A
E
L
A
L
T
----
L
K
V
L
E
-
A
T
A
D
T
D
P
A
L
G
D
V
L
D
Q
P
L
----------
H
T
L
H
H
---------------
I
L
S
Q
L
R
A
C
I
Q
G
R
L
H
H
W
L
H
R
L
Q
E
A
P
------
K
--
K
E
S
P
G
C
L
E
A
S
V
T
F
N
L
F
R
L
L
T
R
D
L
N
C
V
A
S
G
D
L
C
V
-----------------
5
PsiBlast_PDB
55.95
24%
20
- C6 -
2UV8
-
?
G:
[1676-1775]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
D
N
H
F
K
D
T
Y
G
FSILDIV
I
N
N
P
V
----
N
L
T
I
H
F
G
G
E
K
G
K
R
I
R
E
N
Y
-----
S
A
M
I
F
---
E
T
I
V
D
G
K
L
K
T
E
K
I
F
K
E
I
N
E
H
----
S
T
S
Y
T
-
F
R
S
E
K
G
L
L
S
A
T
Q
F
T
Q
P
A
----------
L
T
L
M
E
---------------
K
A
A
F
E
D
--
L
--------------------------------------------------------------------------
4
PsiBlast_PDB
55.09
24%
20
- C6 -
3HMJ
-
FAS1_YEAST
G:
[1693-1792]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
D
N
H
F
K
D
T
Y
G
FSILDIV
I
N
N
P
V
----
N
L
T
I
H
F
G
G
E
K
G
K
R
I
R
E
N
Y
-----
S
A
M
I
F
---
E
T
I
V
D
G
K
L
K
T
E
K
I
F
K
E
I
N
E
H
----
S
T
S
Y
T
-
F
R
S
E
K
G
L
L
S
A
T
Q
F
T
Q
P
A
----------
L
T
L
M
E
---------------
K
A
A
F
E
D
--
L
--------------------------------------------------------------------------
3
PsiBlast_PDB
55.09
24%
20
- C6 -
2VKZ
-
FAS1_YEAST
G:
[1693-1792]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
D
N
H
F
K
D
T
Y
G
FSILDIV
I
N
N
P
V
----
N
L
T
I
H
F
G
G
E
K
G
K
R
I
R
E
N
Y
-----
S
A
M
I
F
---
E
T
I
V
D
G
K
L
K
T
E
K
I
F
K
E
I
N
E
H
----
S
T
S
Y
T
-
F
R
S
E
K
G
L
L
S
A
T
Q
F
T
Q
P
A
----------
L
T
L
M
E
---------------
K
A
A
F
E
D
--
L
--------------------------------------------------------------------------
2
PsiBlast_PDB
50.01
24%
92
- C6 -
2PFF
-
FAS1_YEAST
B:
[-1572]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
D
N
H
F
K
D
T
Y
G
FS
I
L
D
I
V
I
N
N
P
V
----
N
L
T
I
H
F
G
G
E
K
G
K
R
I
R
E
N
Y
-----
S
A
M
I
F
---
E
T
I
V
D
G
K
L
K
T
E
K
I
F
K
E
I
N
E
H
----
S
T
S
Y
T
-
F
R
S
E
K
G
L
L
S
A
T
Q
F
T
Q
P
A
----------
L
T
L
M
E
---------------
K
A
A
F
E
D
--
L
--------------------------------------------------------------------------
25
Fugue
49.89
12%
-0
* C5 *
4TT0
14
LTP_HHV11
A:
[3-131]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
S
----
A
K
Q
Q
R
A
E
A
T
E
R
V
T
A
G
L
R
E
--
V
L
A
A
R
E
R
R
---
A
Q
L
E
A
E
G
L
A
N
L
K
T
L
L
K
V
V
A
V
----
P
A
T
V
A
-
K
T
L
D
Q
A
R
S
A
E
E
I
A
D
Q
V
E
----------
I
L
V
D
Q
---------------
T
E
K
A
R
E
--
L
D
V
Q
A
V
A
W
L
E
H
A
Q
R
T
F
------
E
T
H
P
L
S
A
A
S
G
D
G
P
G
L
--
L
T
R
Q
G
-
A
R
L
Q
A
L
F
D
T
R
R
-------------------
27
Fugue
47.46
18%
40
- C4 -
4EYT
-
?
A:
[10-106]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
N
-------
C
L
I
K
I
I
NIP
Q
G
T
L
K
A
E
V
V
L
A
V
R
H
L
G
Y
E
--------
F
Y
---
C
D
Y
I
D
------------
G
Q
A
----
M
I
R
F
Q
-
N
S
D
E
Q
R
L
A
I
Q
K
L
L
N
H
N
------------
N
N
K
L
---------------
Q
I
E
I
R
G
--
Q
I
C
D
V
I
S
T
I
P
E
D
E
E
K
N
------
Y
--
W
N
Y
I
K
F
K
K
N
-----------------------------------------
30
Fugue
45.67
7%
-16
- C5 -
3THF
-
SHRM_DROME
A:
[1396-1570]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-----------------
N
L
I
K
Q
K
M
D
E
L
I
K
H
L
N
Q
K
I
V
S
L
K
R
E
Q
Q
T
I
S
E
E
C
S
-------
A
N
D
R
L
----
G
Q
D
L
F
A
K
L
A
E
K
V
R
--
P
S
E
--
A
S
K
F
R
T
H
V
---
D
A
V
G
N
I
T
S
L
L
L
S
L
S
E
R
L
A
Q
T
----
E
S
S
L
E
-
T
R
Q
Q
E
R
G
A
L
E
S
K
R
D
L
L
Y
----------
E
Q
M
E
E
---------------
A
Q
R
L
K
S
--
D
I
E
R
R
G
V
S
I
A
G
L
L
A
K
N
------
L
----
S
A
D
M
C
A
D
Y
D
Y
--
F
I
N
M
K
-
A
K
L
I
A
D
A
R
D
L
A
V
R
I
K
G
S
E
E
Q
L
S
S
L
S
D
A
---
11
PsiBlast_PDB
40.74
38%
-76
- C6 -
2KSB
-
NK1R_HUMAN
A:
[113-161]
------------------------------------------------------------------------------------------------------------------------------------------
I
A
A
V
F
A
S
I
-
Y
S
M
T
A
V
A
F
D
R
Y
M
A
I
I
H
P
L
Q
P
R
L
S
A
T
A
T
K
V
V
I
C
V
-----------------
I
W
V
L
A
L
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
40.74
38%
-76
- C6 -
2KSA
-
NK1R_HUMAN
A:
[113-161]
------------------------------------------------------------------------------------------------------------------------------------------
I
A
A
V
F
A
S
I
-
Y
S
M
T
A
V
A
F
D
R
Y
M
A
I
I
H
P
L
Q
P
R
L
S
A
T
A
T
K
V
V
I
C
V
-----------------
I
W
V
L
A
L
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
40.74
38%
-76
- C6 -
2KS9
-
NK1R_HUMAN
A:
[113-161]
------------------------------------------------------------------------------------------------------------------------------------------
I
A
A
V
F
A
S
I
-
Y
S
M
T
A
V
A
F
D
R
Y
M
A
I
I
H
P
L
Q
P
R
L
S
A
T
A
T
K
V
V
I
C
V
-----------------
I
W
V
L
A
L
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
40.47
20%
261
* C6 *
2L36
-
?
A:
[1-24]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
G
K
A
L
-----------------
K
K
A
K
K
G
I
G
A
V
L
K
V
L
T
T
G
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
40.28
25%
35
- C7 -
3B9F
2
IPSP_BOVIN
I:
[326-394]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
H
S
N
I
Q
V
S
E
M
V
H
K
A
V
----------
V
E
V
D
E
---------------
S
G
T
R
-----
A
A
A
A
T
G
T
I
F
T
F
R
S
A
R
------
L
--
N
S
Q
R
L
V
F
N
R
P
F
L
--
M
F
I
V
D
-
N
N
I
L
F
L
G
K
V
N
R
-------------------
7
PsiBlast_PDB
39.99
25%
56
- C7 -
2OL2
-
?
A:
[326-394]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
H
S
N
I
Q
V
S
E
M
V
H
K
A
V
----------
V
E
V
D
E
---------------
S
G
T
R
-----
A
A
A
A
T
G
T
I
F
T
F
R
S
A
R
------
L
--
N
S
Q
R
L
V
F
N
R
P
F
L
--
M
F
I
V
D
-
N
N
I
L
F
L
G
K
V
N
R
-------------------
17
HHSearch
39.73
12%
276
- C6 -
2L16
-
TATAD_BACSU
A:
[21-45]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
P
S
K
L
P
E
I
-----------------
G
R
A
A
G
R
T
L
L
E
F
K
S
A
T
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
36.53
25%
65
* C7 *
2HI9
1
IPSP_HUMAN
A:
[294-362]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
H
S
N
I
Q
V
S
E
M
V
H
K
A
V
----------
V
E
V
D
E
---------------
S
G
T
R
-----
A
A
A
A
T
G
T
I
F
T
---------------
S
Q
R
L
V
F
N
R
P
F
L
--
M
F
I
V
D
-
N
N
I
L
F
L
G
K
V
N
R
-------------------
16
HHSearch
32.88
13%
281
- C6 -
3CI9
-
HSBP1_HUMAN
A:
[11-34]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
-----------------
T
S
V
V
Q
T
L
L
Q
Q
M
Q
D
K
F
Q
T
I
S
D
Q
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------