@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2371: (2016-04-03 )
MFLGLRELVYSKLRYILVTGIMVLIMLLSLILSGLANGLAYDNASSVADNGVPYYVLSKDAQDKLSRSQFPESKLADVKKDANVKDAAVLGQSMQTLKRESDDKKFSVALFGIQPDSFLAPKISDGANIQVTKPDEIVVDSSLKSDGIKIGDVLMDDILNRELTVVGFTENQKYSHAPVVYINIATWQEINPVLYHQKIPQTSTIAIKTENPDKGVTLTDKDLTTIDHKEFLNQIPGYSAEQMTLNMMIFFLIIIGGFILTAFFYVMTLQKTTQFGILKALGTKTSYLVKSIITQVVIISIISILISVGVTLILPSIMPAAMPFRLSPMTIALYSGLFFLVALFGALLSLRRIAKVDALDAIRGGDE
Atome Classification :
(20 SA)
----------------------.........10.-------------------....----...20........30---........40........50........60........70........80......-..90......-------------------------------..100.......110......--.120........--130---.-.......140..-.-.-..---.150......--.160...------....170...--....180.......190.......200.......210......-.220.......230.......240.......250......--------------------.260.......270...-----.-----...280.--.......---290....-----.---..300.......310.......320-.........330..------..--------------...340.....--..350.......360.....-----------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------MFL
G
L
R
E
L
V
Y
S
K
-------------------
L
R
Y
I
----
L
V
T
G
I
M
V
L
I
M
L
L
S
L
I
---
L
S
G
L
ANGLAYDNASSVADNGV
P
Y
Y
V
LSKD
A
Q
D
K
L
S
R
SQFP
E
S
K
L
A
D
V
KKDANV
K
D
A
-
A
V
L
G
Q
S
M
Q
T
L
-------------------------------
K
RESDD
K
K
F
S
V
A
L
F
GIQPDSF--LAP-KISDG
A
N
I
--
Q
V----T-KP
D
E
I
V
V
DSSLK-S-D-GI---
K
I
G
D
V
L
M
D
D
I
--LNR
E
L
T
V
------
V
G
FTENQKYS--HA
P
V
V
Y
I
NIA
T
W
QEI
N
P
V
L
Y
HQKIPQT
S
T
I
A
I
KTENPDK
G
V
T
L-TDKDLTTI
D
H
K
E
F
L
N
QIPGYS
A
E
Q
M
T
L
N
M
M
I
F
F
L
I
I
I
G
G
F
--------------------
I
L
T
A
F
F
Y
V
M
T
L
Q
KT
T
Q
F
-----
G
-----
I
L
K
A
L-G--T
K
T
S
Y
L
V
---
K
S
I
I
T
Q
V
-----
V
---
I
I
S
I
I
S
I
L
I
S
V
G
V
T
L
I
L
P
S
IMPA---AMPFRLS
P
M
T
I
A
L
Y
------
S
G
--------------
L
F
F
L
V
A
L
F
G
A
L
--
L
S
L
R
R
I
A
K
V
D
A
L
D
A
IRGGDE-----------
30
Fugue
77.71
18%
-68
- C3 -
4MND
4
DIPPS_ARCFU
A:
[40-457]
----------------L
M
K
A
V
I
L
A
A
G
L
G
G
G
V
P
K
P
-------------------
L
V
R
V
GGCE
I
I
L
R
T
M
K
L
L
S
P
H
V
S
E
---
F
I
I
V
A
S
R
Y
A
D
D
I
D
A
F
L
K
D
K
G
F
N
Y
K
I
V
R
H
D
R
P
E
K
-------
G
N
G
Y
S
L
L
V
A
K
N
H
V
E
D
R
-
F
I
L
T
M
G
D
H
V
Y
-------------------------------
S
Q
Q
F
I
E
K
--
A
V
R
G
E
G
V
I
A
D
R
E
--
P
R
F
V
D
I
G
E
A
T
K
I
--
R
V
----
E
-
D
G
R
V
A
K
I
G
K
D
L
R
-
E
F
D
-
C
V
---
D
T
G
F
F
V
L
D
D
S
--
I
F
E
H
A
E
K
L
R
DRE
E
I
P
L
S
E
I
V
K
L
A
--
R
L
P
V
T
Y
V
D
G
E
L
W
M
D
V
D
T
---
K
E
D
V
R
R
A
N
R
A
L
V
S
A
A
V
G
D
G
F
I
S
R
K
I
N
R
K
I
S
T
R
I
S
A
A
I
V
N
K
V
---
N
P
N
Q
M
T
L
I
S
F
L
V
G
A
F
S
A
L
A
S
--------------------
F
F
S
I
P
L
A
G
L
L
Y
Q
F
S
S
I
L
-----
D
G
C
D
G
E
I
A
R
A
S
-
L
KM
S
K
K
G
G
Y
V
---
D
S
I
L
D
R
F
-----
V
D
F
L
F
L
A
I
I
A
L
L
Y
P
K
T
A
T
V
A
M
F
A
I
F
G
S
---
V
M
V
S
Y
T
S
E
K
Y
K
A
E
F
------
G
E
SIRVLNYIPGK
R
D
E
R
I
F
L
I
M
I
F
C
L
L
S
A
I
S
L
Q
W
I
F
W
M
F
L
F
V
A
A
I
S
L
T
R
V
V
V
T
L
L
A
V
L
V
S
28
Fugue
64.16
14%
-76
- C3 -
4CZB
1
NAH1_METJA
A:
[1-415]
-----------M
E
L
M
M
A
I
G
Y
L
G
L
A
L
V
L
G
S
L
V
A
K
I
-------------------
A
E
K
L
----
K
I
P
D
I
P
L
L
L
L
L
G
L
I
I
G
PF
L
Q
I
I
P
S
D
S
A
M
E
I
F
E
Y
A
G
P
I
G
L
I
F
I
L
L
G
G
A
F
T
M
R
I
S
L
L
K
R
V
I
K
T
V
V
R
L
D
T
I
T
F
L
I
T
L
-
L
I
S
G
F
I
F
N
M
V
L
NLPYTS
P
V
G
Y
L
F
G
A
I
T
A
A
T
D
P
A
T
L
I
P
V
F
S
R
V
R
T
N
P
E
V
A
I
T
L
E
A
E
S
I
F
N
D
P
L
--
G
I
V
-
S
T
S
V
I
L
G
L
F
G
L
F
----
S
-
S
S
N
P
L
I
D
L
I
T
L
A
-
G
-
G
-
A
I
---
V
V
G
-
L
L
L
A
K
I
--
Y
E
K
I
I
I
H
------
C
D
F
H
E
Y
V
A
P
L
--
V
L
G
G
A
M
L
L
L
Y
V
G
D
D
L
L
P
S
I
C
G
Y
G
F
S
--
G
Y
M
A
V
A
I
M
G
L
Y
L
G
D
A
L
-
F
R
A
D
--
D
I
D
Y
K
Y
I
V
S
F
C
D
D
L
S
L
L
A
R
V
F
I
F
V
F
L
G
A
C
I
K
L
S
M
--------------------
L
E
N
Y
F
I
P
G
L
L
V
A
L
G
S
I
F
L
A
R
P
L
G
-----
V
F
L
G
L
I
G
--
S
K
H
S
F
K
E
---
K
L
Y
F
A
L
E
-----
G
---
P
R
G
V
V
P
A
A
L
A
V
T
V
G
I
E
I
L
K
N
A
D
K
---
I
P
A
S
I
T
K
Y
I
T
P
T
D
I
------
A
G
--------------
T
I
I
I
G
T
F
M
T
I
L
--
L
S
V
I
L
E
A
S
W
A
G
M
L
A
L
K
L
L
G
E
-----------
29
Fugue
60.78
14%
-50
- C3 -
3RKI
3
?
A:
[26-508]
Q
N
I
T
E
E
F
Y
QSTC
S
A
V
S
K
G
Y
L
S
A
L
R
T
G
W
Y
T
S
V
I
T
I
E
L
SNIKENKCNGTDAKVK
L
I
K
Q
E
----
L
D
K
Y
K
N
A
V
T
E
L
Q
L
L
M
---
Q
S
A
I
A
S
G
V
A
V
S
K
V
L
H
L
E
G
E
V
N
K
I
K
S
A
L
L
S
T
N
K
A
V
V
S
L
S
N
G
V
S
V
L
T
S
K
V
L
D
L
K
N
Y
I
D
-
K
Q
L
L
P
I
V
N
K
Q
-------------------------------
S
C
S
I
S
N
I
E
T
V
I
E
F
Q
Q
K
N
N
R
L
L
E
-
I
T
R
-
E
F
S
V
N
A
G
V
--
T
T
----
P
-
V
S
T
Y
M
L
T
N
S
E
L
L
-
S
-
L
-
I
N
---
D
M
P
I
T
--
N
D
Q
--
K
K
L
M
S
N
N
------
V
Q
I
V
R
Q
Q
S
Y
S
--
I
M
S
I
I
K
E
E
V
L
A
Y
V
V
Q
L
P
L
Y
G
V
I
D
T
P
C
W
K
L
H
T
S
P
L
C
T
T
N
S
N
I
C
L
-
T
R
T
D
R
G
W
Y
C
D
N
A
G
S
V
S
F
F
P
Q
A
E
T
C
K
V
Q
S
N
R
V
F
C
D
T
M
N
S
L
T
L
P
SE
V
N
L
C
N
V
DIFNPKYD
C
K
I
M
T
S
K
T
D
V
S
S
S
V
I
T
S
L
G
-----
A
-----
I
V
S
C
Y
-
G
--
K
T
K
C
T
A
S
N
KN
R
G
I
I
K
T
F
SN
G
C
D
Y
---
V
S
N
K
G
V
D
T
V
S
V
G
N
T
L
Y
Y
V
N
K
Q
E
G
---
K
S
L
Y
V
K
G
E
P
I
I
N
F
Y
------
D
P
--------------
L
V
F
P
S
D
E
F
D
A
S
--
I
S
Q
V
N
E
K
I
N
Q
S
L
A
F
I
R
K
S
D
E
L
L
H
N
VN-----
13
PsiBlast_PDB
48.34
30%
-105
- C3 -
3WFE
3
NORB_PSEAE
B:
[392-458]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
T
V
-----
A
---
M
V
F
I
T
L
F
L
S
A
A
G
V
L
Q
V
W
L
Q
R
M
P
A
DGA
A
M
T
F
M
A
T
Q
D
Q
L
A
I
F
YWLREG
A
G
--------------
V
V
F
L
I
G
L
V
A
Y
L
--
L
S
F
----------------------------
10
PsiBlast_PDB
48.34
30%
-104
- C3 -
3WFB
1
NORB_PSEAE
B:
[392-458]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
T
V
-----
A
---
M
V
F
I
T
L
F
L
S
A
A
G
V
L
Q
V
W
L
Q
R
M
P
A
DGA
A
M
T
F
M
A
T
Q
D
Q
L
A
I
F
YWLREG
A
G
--------------
V
V
F
L
I
G
L
V
A
Y
L
--
L
S
F
----------------------------
18
HHSearch
47.52
22%
-38
- C5 -
3FTJ
-
MACB_AGGAC
A:
[375-471]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
A
N
L
Y
G
I
G
E
Q
Y
F
D
V
E
G
L
-
K
L
K
Q
G
R
L
L
--
T
E
D
D
V
D
Q
-
S
N
Q
V
V
V
L
D
E
S
A
K
K
A
-
I
-
F
A
NEN
P
L
G
K
T
V
I
F
N
----
K
R
P
F
R
V
------
I
G
V
V
S
D
Q
------
S
L
N
L
Y
S
P
Y
S
T
V
L
N
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
47.31
30%
-105
- C3 -
3WFD
3
NORB_PSEAE
B:
[392-458]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
T
V
-----
A
---
M
V
F
I
T
L
F
L
S
A
A
G
V
L
Q
V
W
L
Q
R
M
P
A
DGA
A
M
T
F
M
A
T
Q
D
Q
L
A
I
F
YWLREG
A
G
--------------
V
V
F
L
I
G
L
V
A
Y
L
--
L
S
F
----------------------------
11
PsiBlast_PDB
47.30
30%
-106
- C3 -
3WFC
3
NORB_PSEAE
B:
[392-458]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
T
V
-----
A
---
M
V
F
I
T
L
F
L
S
A
A
G
V
L
Q
V
W
L
Q
R
M
P
A
DGA
A
M
T
F
M
A
T
Q
D
Q
L
A
I
F
YWLREG
A
G
--------------
V
V
F
L
I
G
L
V
A
Y
L
--
L
S
F
----------------------------
9
PsiBlast_PDB
47.27
30%
-104
- C3 -
3O0R
2
NORB_PSEAE
B:
[392-458]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
T
V
-----
A
---
M
V
F
I
T
L
F
L
S
A
A
G
V
L
Q
V
W
L
Q
R
M
P
A
DGA
A
M
T
F
M
A
T
Q
D
Q
L
A
I
F
YWLREG
A
G
--------------
V
V
F
L
I
G
L
V
A
Y
L
--
L
S
F
----------------------------
36
Fugue
45.59
15%
136
- C3 -
1Z0J
-
B:
[9-59]
----------------------------------------------------------------------------------------------------------
I
E
E
E
L
L
L
Q
Q
I
D
N
I
K
A
Y
I
F
D
A
K
Q
C
G
R
L
D
E
V
-
E
V
L
T
E
N
L
R
E
L
-------------------------------
K
H
T
L
A
K
Q
K
G
G
T
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
44.91
19%
148
- C3 -
4C7N
1
A:
[2-48]
--------------------------------------------------------------------------------------------------------
S
S
V
D
Y
I
R
K
L
Q
R
E
Q
Q
R
A
K
E
L
E
N
R
Q
K
K
L
E
H
A
N
R
-
H
L
L
L
R
I
Q
E
L
E
-------------------------------
M
Q
A
R
A
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
44.61
21%
189
- C3 -
1HF9
-
ATIF1_BOVIN
A:
[1-41]
---------------------------------------------------------------------------------------------------------------
A
L
K
K
H
H
E
N
E
I
S
H
H
A
K
E
I
E
R
L
Q
K
E
I
-
E
R
H
K
Q
S
I
K
K
L
-------------------------------
K
Q
S
E
D
D
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
44.61
21%
189
- C3 -
1HF9
-
B:
[1-41]
---------------------------------------------------------------------------------------------------------------
A
L
K
K
H
H
E
N
E
I
S
H
H
A
K
E
I
E
R
L
Q
K
E
I
-
E
R
H
K
Q
S
I
K
K
L
-------------------------------
K
Q
S
E
D
D
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
43.20
14%
144
- C3 -
1Y66
7
?
A:
[3-52]
-------------------------------------------------------------------------------------------------------
Q
W
S
E
E
V
E
R
K
L
K
E
F
V
R
R
H
Q
E
I
T
Q
E
T
L
H
E
Y
A
Q
K
L
-
G
L
N
Q
Q
A
I
E
Q
F
-------------------------------
F
R
E
F
E
Q
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
42.32
21%
0
- C4 -
2RA1
-
?
A:
[369-439]
-------------------------------------------------------------------------------------------------------------------
N
K
L
P
E
D
S
A
V
D
L
T
K
Y
V
T
V
K
D
A
-
A
--
G
N
V
I
K
S
----------------------------------------------
G
F
E
L
E
F
T
--
S
S
E
-
K
L
T
Q
G
K
F
I
--
N
T
----
T
-
G
K
K
S
V
I
V
N
A
T
V
K
-
G
-
T
-
N
V
---
T
T
G
N
V
I
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
42.00
33%
38
- C3 -
4O7G
2
ACFR2_ARATH
A:
[170-214]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
-
T
T
G
I
L
E
K
V
T
F
L
Q
V
N
Q
V
I
T
R
Y
S
T
E
A
M
L
V
N
T
M
G
V
L
I
L
I
L
G
G
F
--------------------
V
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
40.99
33%
35
- C3 -
4O6Y
1
ACFR2_ARATH
A:
[170-214]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
-
T
T
G
I
L
E
K
V
T
F
L
Q
V
N
Q
V
I
T
R
Y
S
T
E
A
M
L
V
N
T
M
G
V
L
I
L
I
L
G
G
F
--------------------
V
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
39.25
33%
39
- C3 -
4O79
1
ACFR2_ARATH
A:
[170-214]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
-
T
T
G
I
L
E
K
V
T
F
L
Q
V
N
Q
V
I
T
R
Y
S
T
E
A
M
L
V
N
T
M
G
V
L
I
L
I
L
G
G
F
--------------------
V
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
39.24
15%
-33
- C5 -
3IS6
2
?
A:
[76-166]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
T
K
T
L
L
A
E
P
A
F
L
D
M
F
G
V
-
E
L
I
A
G
V
R
D
--
S
A
----
L
R
D
N
M
T
C
L
I
S
E
S
L
A
-
R
K
M
G
G
D
---
V
L
G
K
R
L
R
P
A
E
SK
S
D
R
A
I
T
I
------
G
G
V
F
E
D
L
P
H
N
SS
I
Q
A
D
M
L
L
P
I
T
W
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
39.01
31%
83
- C1 -
2B39
-
CO3_BOVIN
A:
[757-832]
-------------------------------------------------------------------------------------------------------------
E
D
I
I
S
R
S
Q
F
P
E
S
W
L
W
T
V
I
E
D
L
K
Q
A
D
K
N
G
I
S
T
K
L
M
N
V
F
-------------------------------
L
K
D
S
-----------
I
T
T
W
E
I
--
L
A
V
-
S
L
S
D
K
K
G
I
--
C
V
----
A
-
D
P
Y
E
V
T
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------