@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu01760: (2016-06-03 )
MDKFLNNRWAVKIIALLFALLLYVAVNSNQAPTPKKPGESFFPTSTTDEATLTDIPVKAYYDDENYVVTGVPQTVNVTIKGSTSAVKKARQTKNFEIYADMEHLKTGTHKVELKAKNVSDGLTISINPSVTTVTIQERTTKSFPVEVEYYNKSKMKKGYSPEQPIVSPKNVQITGSKNVIDNISLVKASVNLENADETIEKEAKVTVYDKDGNALPVDVEPSVIKITVPVTSPSKKVPFKIERTGSLPDGVSIANIESSPSEVTVYGSQDVLDSLEFIDGVSLDLSKINKDSDIEADIPLPDGVKKISPSKVTLHIEVDSEADQKFENVPIKTVGLSSSQNIEFLDPESQAIDVTAKGSPTNINKLKKSDIELYVNVSDLEDGEHSVKLEVNGPQNVTWSLGRKNAKIKLTSKKSNTSTNDNSSNTSGNQDTDKQTNDQKNNQQEDTKNTDKNNNDQNQDGNKDQNQDQDEDESTANSQSSSE
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80.---....--...--90-..-.-......100.......110.......-120.......130.......140........150.......160.......170.......180...----......190...-.....200......-.210.......---220-........230...-....240...-....250.......260.......270.......280.....-..290.......300-...---.....310.......320.......330.......340-.......350......-.360.....--.-.370.......380.......390..-......400........410.......420.......430.......440.......450.......460.......470.......480.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MDKFLNN
R
W
A
V
K
I
I
A
L
L
F
A
L
L
L
Y
V
AVNSNQAPTPKKPGESFFPTSTTDEATLTD
I
P
V
K
A
Y
YDDE
N
Y
V
V
TGVP
Q
T
V
N
V
T
I
KGS---
T
S
A
V
--
K
K
A
--R--QT-K-
N
F
E
I
Y
A
D
M
E
H
LKTG
T
H
K
V
E
L
K
AKNVS-D
G
L
T
I
S
INP
S
V
T
T
V
T
I
QERTTK-SF
P
V
E
V
E
YY
N
K
S
K
M
KKGYSPEQPIVSPK
N
V
Q
I
TGSKNVI--D
N
I
----
S
L
V
K
A
S
V-NLEN-
A
D
E
T
I
EKEA
K
V
T
V
Y-DKDGNALPVDV---EP--
S
V
I
K
I
T
V
PVTSPSK-KV
P
F
K
I
ERTG-SLPDG
V
S
I
ANIESSPS
E
V
T
V
YG
S
Q
D
V
L
D
S
L
E
F
IDGVS
L
D
L
S
K-INKDSDIEADIPLP--DGV---KKISP
S
K
V
T
L
H
I
E
VDSEADQKFENV
P
I
K
T
VGLSSSQ
N
I
-
E
F
LDPES
Q
A
I
D
V
TAKG-SPT
N
I
N
K
LK--K-S
D
I
E
L
Y
V
N
VSDLEDGE
H
S
V
K
L
E
-VNG-PQ
N
V
T
W
S-LGRKN
A
K
I
K
L
T
SKKSNTSTNDNSSNTSGNQDTDKQTNDQKNNQQEDTKNTDKNNNDQNQDGNKDQNQDQDEDESTANSQSSSE
14
HHSearch
93.16
23%
-88
- C5 -
4QDY
3
?
A:
[10-196]
------------------------------------------------
T
N
T
V
T
N
V
P
I
D
I
R
Y
N
S
D
K
Y
F
I
S
G
F
A
S
E
V
S
V
V
L
T
G
A
---
N
R
L
S
L
A
S
E
M
QE
S
--
T
--
R
-
K
F
K
V
T
A
D
L
T
D
A
G
V
G
T
I
E
V
P
L
S
I
E
D
L
P
-
N
G
L
T
A
V
A
T
P
Q
K
I
T
V
K
I
G
K
K
A
Q
K
D
K
V
K
I
V
P
E
I
D
P
-
S
Q
I
D
S
R
V
Q
I
E
N
V
M
V
S
D
K
E
V
S
I
T
S
D
Q
E
T
L
--
D
R
I
----
D
K
I
I
A
V
L
-
P
T
S
E
R
I
T
G
N
Y
S
G
S
V
P
L
Q
A
I
-
D
R
N
G
V
V
L
P
A
V
I
---
T
P
--
F
D
T
I
M
K
V
T
T
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
88.39
24%
-80
- C5 -
4QDY
3
?
A:
[12-198]
--------------------------------------------------
T
V
T
N
V
P
I
D
I
R
Y
N
S
D
K
Y
F
I
S
G
F
A
S
E
V
S
V
V
L
T
G
A
N
R
L
S
L
A
S
--
E
M
Q
--
E
--
S
T
-
R
-
K
F
K
V
T
A
D
L
T
D
A
G
V
G
T
I
E
V
P
L
S
I
E
D
L
P
-
N
G
L
T
A
V
A
T
P
Q
K
I
T
V
K
I
G
K
K
A
Q
K
-
D
K
V
K
I
V
P
E
I
D
P
S
Q
I
D
S
R
V
Q
I
E
N
V
M
V
S
D
K
E
V
S
I
T
S
D
Q
E
T
L
--
D
R
I
----
D
K
I
I
A
V
L
P
T
S
E
R
-
I
T
G
N
Y
S
G
S
V
P
L
Q
A
I
-
D
R
N
G
V
V
L
P
A
V
I
---
T
P
F
D
T
I
M
K
V
T
T
K
P
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
84.40
41%
-90
- C5 -
5HQH
2
?
A:
[8-103]
----------------------------------------------
S
D
S
E
V
I
E
N
V
P
V
K
V
Y
Y
D
K
T
N
L
Y
I
S
G
I
P
E
T
V
T
V
T
L
S
G
P
---
R
S
I
V
--
Q
S
A
--
K
--
A
Q
-
Q
-
D
F
T
V
Y
A
D
L
K
N
A
S
I
G
T
Q
E
V
K
L
Q
V
K
D
V
S
-
D
R
L
K
V
K
V
N
P
A
T
V
N
V
N
V
Q
E
K
V
T
K
-
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
82.46
41%
-93
- C5 -
5HQH
2
?
A:
[9-103]
-----------------------------------------------
D
S
E
V
I
E
N
V
P
V
K
V
Y
Y
D
K
T
N
L
Y
I
S
G
I
P
E
T
V
T
V
T
L
S
G
P
---
R
S
I
V
--
Q
S
A
--
K
---
A
Q
Q
-
D
F
T
V
Y
A
D
L
K
N
A
S
I
G
T
Q
E
V
K
L
Q
V
K
D
V
S
-
D
R
L
K
V
K
V
N
P
A
T
V
N
V
N
V
Q
E
K
V
T
K
-
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
73.66
21%
-34
- C5 -
4QDY
3
?
A:
[15-198]
------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
P
I
D
I
R
Y
---
N
S
D
K
Y
F
I
S
G
-
F
A
S
E
V
S
V
V
L
T
G
A
N
R
L
S
L
A
S
E
M
QEST
R
K
F
K
V
T
A
-
D
L
T
D
-
A
G
V
-
G
T
I
E
V
P
L
S
I
E
D
L
P
N
G
L
T
A
-
V
-
A
---
T
P
--
Q
K
I
T
V
K
I
G
K
K
-
A
Q
K
D
K
V
K
I
V
P
E
I
D
P
S
Q
I
D
S
R
V
Q
I
E
N
V
M
V
S
D
K
E
V
S
I
T
S
D
Q
E
T
L
D
R
I
D
K
I
-
I
A
V
L
P
T
S
E
R
I
T
G
N
Y
S
G
S
V
P
L
Q
A
I
D
R
N
G
V
VLP
A
V
I
T
P
F
D
T
I
M
K
V
T
T
K
P
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
72.02
26%
-60
- C5 -
2KQ1
-
?
A:
[2-111]
------------------------------------------
P
T
F
D
H
G
N
L
S
L
G
E
L
E
L
T
V
L
Y
D
E
E
R
Y
D
I
V
E
Q
T
E
T
V
Q
V
D
L
E
G
P
---
R
G
V
L
--
T
V
F
--
R
--
F
A
-
R
P
S
Y
E
V
F
V
D
L
T
E
A
G
E
G
S
H
T
V
D
V
E
H
R
G
F
P
-
G
D
L
A
V
T
V
E
P
R
M
A
R
V
Q
L
E
E
R
Q
T
V
-
S
V
P
V
T
V
E
M
I
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
71.96
23%
-53
- C5 -
2KQ1
-
?
A:
[1-119]
-----------------------------------------
M
P
T
F
D
H
G
N
L
S
L
G
E
L
E
L
T
V
L
Y
D
E
E
R
Y
D
I
V
E
Q
T
E
T
V
Q
V
D
L
E
G
P
---
R
G
V
L
--
T
V
F
--
R
F
-
A
R
-
P
-
S
Y
E
V
F
V
D
L
T
E
A
G
E
G
S
H
T
V
D
V
E
H
R
G
F
P
-
G
D
L
A
V
T
V
E
P
R
M
A
R
V
Q
L
E
E
R
Q
T
V
-
S
V
P
V
T
V
E
M
-
I
N
L
E
H
H
H
H
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
69.57
26%
-59
- C5 -
2KQ1
-
?
A:
[7-111]
-----------------------------------------------
G
N
L
S
L
G
E
L
E
L
T
V
L
Y
D
E
E
R
Y
D
I
V
E
Q
T
E
T
V
Q
V
D
L
E
G
P
---
R
G
V
L
--
T
V
F
--
R
F
A
R
--
P
-
S
Y
E
V
F
V
D
L
T
E
A
G
E
G
S
H
T
V
D
V
E
H
R
G
F
P
-
G
D
L
A
V
T
V
E
P
R
M
A
R
V
Q
L
E
E
R
Q
T
V
-
S
V
P
V
T
V
E
M
I
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
69.35
22%
-70
- C5 -
5HQH
2
?
A:
[11-100]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
I
E
N
V
P
V
K
V
Y
Y
D
K
T
N
L
Y
I
-
S
G
I
-
P
--
E
T
V
T
V
T
L
S
G
-
P
R
S
I
V
Q
S
A
K
--
A
Q
Q
D
F
T
V
Y
A
D
L
K
N
A
S
I
G
T
Q
E
V
K
L
Q
-
V
K
D
V
S
D
R
L
K
V
K
-
V
N
P
A
T
V
N
V
N
V
Q
E
K
V
---------------------------------------------------------------------
18
HHSearch
68.73
31%
-70
- C5 -
2KXY
-
?
A:
[6-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
S
K
-
S
V
P
V
K
L
E
L
T
G
-
D
K
A
S
N
V
S
S
I
S
Y
S
F
D
R
G
H
V
T
I
V
G
S
Q
E
A
M
D
K
I
D
S
I
-
T
V
P
V
D
I
S
Q
-
V
T
E
D
T
S
K
T
L
E
L
K
-
A
--
E
G
V
---
T
-
V
Q
P
S
T
V
K
V
N
L
K
V
T
Q
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
66.55
31%
-72
- C5 -
2KXY
-
?
A:
[8-94]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
-
S
V
P
V
K
L
E
L
T
G
-
D
K
A
S
N
V
S
S
I
S
Y
S
F
D
R
G
H
V
T
I
V
G
S
Q
E
A
M
D
K
I
D
S
I
T
-
V
P
V
D
I
S
Q
-
V
T
E
D
T
S
K
T
L
E
L
K
-
A
--
E
G
V
----
T
V
Q
P
S
T
V
K
V
N
L
K
V
----
T
Q
K
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
64.63
17%
-54
* C5 *
2KPU
-
?
A:
[1-96]
------------------------------------------
S
S
Q
T
L
D
R
D
P
T
L
T
L
S
L
I
A
K
N
T
P
A
N
S
M
I
M
T
K
L
P
S
V
R
V
K
T
E
G
Y
---
N
P
S
I
--
N
--------
V
-
N
-
E
L
F
A
Y
V
D
L
S
G
S
E
P
G
E
H
D
Y
E
V
K
V
E
P
I
P
-
N
I
K
I
V
E
I
S
P
R
V
V
T
L
Q
L
E
H
H
H
H
H
-
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
59.77
27%
-44
- C5 -
2KXY
-
?
A:
[6-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------
K
L
S
K
-
S
V
P
V
K
L
E
L
T
G
--
D
K
A
S
N
V
S
S
I
S
Y
S
F
D
R
G
H
V
T
I
V
G
S
Q
E
A
M
--
D
K
I
----
D
S
I
T
V
P
V
-
D
I
S
Q
-
V
T
E
D
T
S
K
T
L
E
L
K
----
A
E
G
----
V
T
V
---
Q
P
--
S
T
V
K
V
N
L
K
V
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
56.55
24%
-14
- C5 -
2KXY
-
?
A:
[1-100]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
S
L
R
K
L
S
K
-
S
V
P
V
K
L
E
L
T
G
-
D
K
A
S
N
V
S
S
I
S
Y
S
F
D
R
G
H
V
T
I
V
G
S
Q
E
A
M
D
K
---
I
D
S
I
T
V
P
V
D
I
-
S
Q
V
T
E
D
T
S
K
T
L
E
L
K
--
A
E
G
---
V
T
V
Q
P
S
T
V
K
V
N
L
K
V
T
Q
K
L
E
H
H
H
H
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
56.24
22%
-8
- C5 -
2L3U
-
?
A:
[4-90]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
D
L
P
I
V
L
R
N
L
P
E
D
L
V
L
-
E
K
P
-
L
--
P
E
V
S
V
T
I
R
A
-
Y
P
E
I
L
N
N
L
T
--
K
-
E
Q
I
S
L
W
I
D
A
T
G
K
A
V
G
E
H
T
V
K
I
Y
-
W
Q
L
-
P
A
G
I
E
M
V
S
I
P
D
V
T
Y
T
L
K
A
K
E
D
P
---------------------------------------------------------------------
29
HHSearch
48.92
26%
-6
- C5 -
1FEU
6
RL25_THETH
A:
[99-176]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
P
L
R
F
V
G
T
P
A
G
V
R
A
G
G
V
L
Q
E
--
I
H
R
D
I
L
V
K
V
-
S
P
R
N
I
P
-------
E
--
F
I
E
V
D
V
S
G
L
E
I
G
D
-
S
L
H
A
S
D
L
K
L
-
P
P
G
V
E
L
A
-
V
S
P
E
E
T
I
A
A
V
V
P
-----------------------------------------------------------------------
21
HHSearch
47.70
21%
-25
- C5 -
2L3U
-
?
A:
[3-89]
--------------------------------------------------
T
L
Y
D
L
P
I
V
L
R
N
L
P
E
D
L
V
L
E
K
P
L
P
E
V
S
V
T
I
R
A
Y
---
P
E
I
L
--
N
N
L
--
T
--
K
--
E
-
Q
I
S
L
W
I
D
A
T
G
K
A
V
G
E
H
T
V
K
I
Y
W
Q
-
L
P
A
G
I
E
M
V
S
I
P
D
V
T
Y
T
L
K
A
K
E
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
46.99
13%
-16
- C5 -
2KQ1
-
?
A:
[8-99]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
S
L
G
E
L
E
L
T
V
L
Y
D
E
E
R
Y
D
I
-
V
E
Q
-
T
--
E
T
V
Q
V
D
L
E
G
-
P
R
G
V
L
T
V
F
R
F
A
R
-
P
S
Y
E
V
F
V
D
L
T
E
A
G
E
G
S
H
T
V
D
V
E
-
H
R
G
-
F
P
G
D
L
A
V
T
V
E
P
R
M
A
R
V
Q
L
E
E
R
Q
---------------------------------------------------------------------
7
PsiBlast_PDB
45.30
28%
28
- C6 -
3QIW
1
?
D:
[61-161]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
R
F
S
A
E
C
P
S
N
S
P
C
S
L
E
I
Q
S
S
E
A
G
D
--
S
A
L
----
Y
L
C
A
S
S
L
-
N
N
A
N
-
S
D
Y
T
F
G
S
G
T
R
L
L
V
I
-
E
D
L
K
N
V
F
P
P
E
V
A
V
F
E
P
--
S
E
A
E
I
-----
S
H
T
Q
-
K
A
T
L
V
C
L
A
T
G
-
F
Y
P
D
H
V
E
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
44.86
21%
17
- C5 -
5DM6
-
RL25_DEIRA
S:
[95-170]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
P
V
H
T
T
G
R
S
Q
G
E
V
Q
G
G
L
V
D
I
--
V
V
H
N
L
Q
I
V
A
P
G
P
R
R
I
---
P
----
Q
--
E
L
V
V
D
V
T
K
M
N
I
G
D
-
H
I
T
A
G
D
I
K
L
-
P
E
G
C
T
L
A
-
A
D
P
E
L
T
V
V
S
--------------------------------------------------------------------------