@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu17900: (2016-06-28 )
MERHYYTYLIKEEFANHYFGRESVMFELFQDYHWTSLEKQQYEMTEKQIQYITQPIPILHMHQRLKMNLNKTDYRQLDYIYRIALPKAKGHATFMMKEHMIEIVASGDYEAETIFFEVLRKVSPCFLAMDFNSKRYGWLNPVKERNFV
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------.....--....10........20........30----....-.--...-40..----.--.....50....----....60........70........80..-.-.---...---.90...----------------.....100---------........110---.......120..-....-.----------------130-.-......140......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------ME
R
H
Y
--
Y
T
Y
L
I
K
E
E
F
A
N
H
YFG
R
E
S
V
M
F
E
L
F
Q
D
----YHWT-
S
--
L
E
K
-
Q
Q
Y
E
----
M
--
T
E
K
Q
I
Q
Y
I
TQP----I
P
I
L
H
M
H
Q
R
L
K
MNLNK
T
D
Y
R
Q
L
D
Y
I
Y
R
I-A-L---PKA---KGH
A
T
F
----------------
M
M
K
E
H
M
I
----------
E
I
VASGDY
E
A
E
---
T
I
F
F
E
V
L
R
KVS
P
-
C
F
L
A
-M----------------DFN-S-KRYGWLNPVKERNFV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
93.49
100%
-191
- C10 -
4TPS
2
SIRA_BACSU
A:
[8-147]
---------------------------------------------------------------------------------------------------------------------------------------------
E
R
H
Y
--
Y
T
Y
L
I
K
E
E
F
A
N
H
Y
F
G
R
E
S
V
M
F
E
L
F
Q
D
----
Y
H
W
T
-
S
--
L
E
K
-
Q
Q
Y
E
----
M
--
T
E
K
Q
I
Q
Y
I
T
Q
P
----
I
P
I
L
H
M
H
Q
R
L
K
M
N
L
N
K
T
D
Y
R
Q
L
D
Y
I
Y
R
I
-
A
-
L
---
P
K
A
---
K
G
H
A
T
F
----------------
M
M
K
E
H
M
I
----------
E
I
V
A
S
G
D
Y
E
A
E
---
T
I
F
F
E
V
L
R
K
V
S
P
-
C
F
L
A
-
M
----------------
D
F
N
-
S
-
K
R
Y
G
W
L
N
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
93.49
100%
-191
- C10 -
4TPS
2
SIRA_BACSU
A:
[8-147]
---------------------------------------------------------------------------------------------------------------------------------------------
E
R
H
Y
--
Y
T
Y
L
I
K
E
E
F
A
N
H
Y
F
G
R
E
S
V
M
F
E
L
F
Q
D
----
Y
H
W
T
-
S
--
L
E
K
-
Q
Q
Y
E
----
M
--
T
E
K
Q
I
Q
Y
I
T
Q
P
----
I
P
I
L
H
M
H
Q
R
L
K
M
N
L
N
K
T
D
Y
R
Q
L
D
Y
I
Y
R
I
-
A
-
L
---
P
K
A
---
K
G
H
A
T
F
----------------
M
M
K
E
H
M
I
----------
E
I
V
A
S
G
D
Y
E
A
E
---
T
I
F
F
E
V
L
R
K
V
S
P
-
C
F
L
A
-
M
----------------
D
F
N
-
S
-
K
R
Y
G
W
L
N
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_CBE
93.35
100%
-198
- C10 -
4TPS
2
SIRA_BACSU
C:
[8-147]
---------------------------------------------------------------------------------------------------------------------------------------------
E
R
H
Y
--
Y
T
Y
L
I
K
E
E
F
A
N
H
Y
F
G
R
E
S
V
M
F
E
L
F
Q
D
----
Y
H
W
T
-
S
--
L
E
K
-
Q
Q
Y
E
----
M
--
T
E
K
Q
I
Q
Y
I
T
Q
P
----
I
P
I
L
H
M
H
Q
R
L
K
M
N
L
N
K
T
D
Y
R
Q
L
D
Y
I
Y
R
I
-
A
-
L
---
P
K
A
---
K
G
H
A
T
F
----------------
M
M
K
E
H
M
I
----------
E
I
V
A
S
G
D
Y
E
A
E
---
T
I
F
F
E
V
L
R
K
V
S
P
-
C
F
L
A
-
M
----------------
D
F
N
-
S
-
K
R
Y
G
W
L
N
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
40.60
18%
34
- C10 -
1D2Z
1
TUBE_DROME
B:
[1-150]
--------------------------------------------------------------------------------------------------------------------------------------------
L
S
S
K
Y
SR
N
T
E
L
R
R
V
E
--------
D
N
D
I
Y
R
L
A
K
I
----
L
D
E
N
-
S
--
C
W
R
-
K
L
M
S
----
I
IP
K
G
M
D
V
Q
A
C
S
G
A
-----
G
C
L
N
F
P
A
E
I
K
K
G
F
K
Y
T
A
Q
D
V
F
Q
I
D
E
A
A
-
N
R
L
---
P
P
D
---
Q
S
K
S
Q
M
----------------
M
I
D
E
W
K
--------------
T
S
G
K
L
N
E
R
PT
V
G
V
L
L
Q
L
L
V
Q
-
A
E
-
L
F
S
A
-
A
----------------
D
F
V
-
A
-
L
D
--
F
L
N
E
S
T
P
A
R
P
V
DGPG
A
L
I
S
L
E------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
36.46
16%
-4
- C10 -
1HL6
-
MGN_DROME
B:
[4-146]
---------------------------------------------------------------------------------------------------------------------------------------------
E
D
F
Y
--
L
R
Y
Y
V
G
H
K
G
K
---
F
G
H
E
F
L
E
F
E
F
R
P
D
G
K
L
R
Y
A
N
N
-
S
NT
M
I
R
-
K
E
A
F
----
V
--
H
Q
S
V
M
E
E
L
K
R
I
----
I
I
D
S
E
I
M
Q
E
D
D
L
P
W
P
P
P
D
R
---
V
G
R
Q
E
L
-
E
-
I
---
V
I
G
---
D
E
H
I
S
F
----------------
T
T
S
K
T
L
V
----------
D
V
N
R
S
K
D
P
E
G
L
---
R
C
F
Y
Y
L
V
Q
D
L
K
C
-
L
V
F
S
-
L
----------------
I
G
L
-
H
-
F
K
---
I
K
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
36.43
14%
42
- C10 -
4U9V
1
NAA40_HUMAN
B:
[1-197]
-----------------------------------------------------------------------------------------------------------SVCAKVDAANRLGDPLEAFPVFKKYDRNGLNVS
I
E
C
K
R
--
V
S
G
L
E
P
A
T
V
D
W
A
F
D
L
T
K
T
N
M
Q
T
M
Y
E
Q
----
S
E
W
G
W
K
--
D
R
E
-
K
R
E
E
----
M
--
T
D
D
R
A
W
Y
L
I
A
W
ENSS
V
P
V
A
F
S
H
F
R
F
D
V
E
C
G
----
D
E
V
L
Y
C
Y
E
V
-
Q
-
L
---
E
S
K
VRR
K
G
L
G
K
F
----------------
L
I
Q
--
I
L
----------
Q
L
M
A
N
S
T
-
Q
M
K
---
K
V
M
L
T
V
F
K
H
N
H
G
-
A
Y
Q
F
-
F
REALQFEIDDSSPSMS
G
C
C
-
G
-
E
D
C
S
Y
E
I
L
S
R
R
T
K
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
35.29
36%
-258
- C11 -
2MBL
-
?
A:
[20-33]
---------------------------------------------------------------------------------------------------------------------------------------------
E
R
T
Y
--
Q
L
Y
A
V
R
D
E
E
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
33.83
35%
-91
- C5 -
1JLP
-
CM3F_CONPU
A:
[1-24]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
C
C
L
--------------------
Y
G
-
S
-
C
R
F
G
C
Y
N
A
L
C
C
R
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
33.12
20%
59
- C8 -
4R4X
2
?
A:
[1-546]
A
Q
T
Y
E
I
T
Y
Q
N
S
F
EGKINQN
H
I
I
S
I
T
N
SD
K
T
L
L
F
N
E
K
I
K
N
KKADFP
F
E
V
N
E
I
NRKNN
E
V
S
Q
F
A
FLNNN
E
I
V
K
T
S
D
NTILAK
Q
E
F
K
P
T
S
E
T
G
K
I
LG
Y
N
V
K
K
A
V
T
S
V
NS
N
T
I
E
V
W
Y
T
NDLKVKGGPSILGQDLGLVL
K
T
V
R
NG
S
S
V
V
E
--
A
T
S
V
K
K
I
K
A
L
D
D
--------
Q
S
L
F
N
G
----
K
N
I
T
-
E
--
K
D
A
-
L
T
Y
K
----
D
M
-
I
W
K
S
R
F
---
I
T
----
I
P
V
F
E
-----
N
E
T
I
N
F
S
D
A
S
K
S
D
------
Q
-
V
---
I
Q
R
---
F
G
N
G
T
I
----------------
I
L
K
K
V
K
I
----------
P
E
I
K
Q
G
N
-------
T
I
F
V
E
L
K
Q
K
S
N
G
-
D
-----------------------
A
-
Y
-
D
R
T
G
D
V
F
I
I
P
Q
E
R
A
I
S
Y
Y
T
G
L
T
QGVKS
L
P
V
Y
Q
N
GNG
K
S
Y
Q
GVALTPDYLPFIEL
M
R
F
F
T
P
FGIGHFNEKIQLKG
K
N
W
H
N
N
T
P
Y
R
Q
D
ITELRPQLSGKEIL
I
G
A
F
I
G
N
YDKG
G
H
Q
I
S
L
E
L
S
I
H
PDQQKIVNNN
F
V
L
P
VFNTTNVMEMA
G
Q
D
Y
PTMFNSDKG
V
E
V
D
F
I
L
T
K
D
L
K
NAQLR
Y
I
T
T
G
H
G
GWGAGDEF
V
P
K
E
N
S
I
Y
L
DGKLA
H
A
F
T
P
W
R
TDCGSYRLFNPASGNFEDGLSSSDLSRSNWCPG
T
I
T
N
P
V
Y
I
N
LGNLNA
G
K
H
T
I
Q
V
K
I
P
Q
G
A
P
E
GS
S
Q
S
F
W
N
V
S
G
V
L
L
G
Q
E
H
H
H
H
H
H
HH
13
HHSearch
33.10
19%
-284
- C4 -
2HEV
-
TNFL4_HUMAN
F:
[35-55]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
D
E
I
M
----------------
K
V
Q
D
N
S
V
----------
I
I
N
C
D
G
F
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
31.36
24%
-62
* C11 *
3UBM
-
?
A:
[339-445]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
E
T
H
M
F
E
I
F
A
A
----
I
E
K
A
-
I
--
A
D
K
-
T
K
Y
E
----
A
--
V
A
H
L
A
K
Y
R
V
P
C
----
S
P
V
L
S
M
----
K
E
I
A
E
A
P
D
L
R
E
S
G
T
I
V
E
V
-
Q
-
Q
---
P
K
R
---
G
T
F
L
T
I
N
P
I
KFSGFTPE
I
K
A
A
P
L
L
G
Q
H
T
D
----------
E
V
L
A
E
L
G
Y
S
A
E
---
E
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
29.66
9%
-13
- C10 -
2BSW
4
?
A:
[2-146]
--------------------------------------------------------------------------------------------------------------------------------------------
I
E
V
K
P
--
I
N
A
E
D
T
Y
E
L
R
H
R
I
L
R
P
N
---------------
Q
P
-
I
--
E
A
C
M
F
E
S
D
----
L
--
L
R
G
A
F
H
L
G
G
Y
Y
----
G
G
K
L
I
S
I
A
S
F
H
Q
A
E
H
S
E
L
Q
G
Q
K
Q
Y
Q
L
R
G
M
A
-
T
L
EG
Y
R
E
---
Q
K
A
G
S
S
----------------
L
I
K
H
A
E
E
----------
I
L
R
K
R
G
---
A
D
---
L
L
W
C
N
A
R
T
S
A
S
G
-
Y
Y
K
K
-
L
----------------
G
F
S
-
E
-
Q
G
E
V
F
D
T
P
P
V
G
P
H
I
L
M
Y
K
R
IT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
29.38
13%
-160
- C6 -
4RMO
-
?
A:
[28-52]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
N
R
P
-
H
Y
Y
C
-
F
----------------
E
D
S
-
N
Y
N
G
I
Y
W
M
I
P
L
S
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
28.97
30%
-
- C3 -
3KA5
-
?
A:
[48-57]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
G
N
Y
G
L
I
E
P
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
28.89
14%
-46
- C10 -
4DID
-
SOPB_SALTY
B:
[16-142]
--------------------------------------------------------------------------------------------------------------------------------------------
A
R
P
E
I
--
I
V
L
R
E
P
G
A
T
W
G
N
Y
L
Q
H
Q
K
A
S
N
H
--
S
L
----
H
N
L
Y
-
N
--
L
Q
R
-
D
L
L
T
----
V
--
A
A
T
V
L
G
--
K
Q
D
----
P
V
L
T
S
M
A
N
Q
M
E
L
A
K
V
K
A
D
--------
R
P
-
A
-
T
---
K
Q
E
---
E
A
A
A
K
-----------------
A
L
K
K
N
L
I
----------
E
L
I
A
A
R
T
Q
Q
Q
D
---
G
L
P
A
K
E
A
H
R
-----
F
A
A
-
V
----------------
A
F
R
-
D
-
A
Q
V
K
Q
L
N
N
Q
P
W
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
27.83
21%
-212
- C10 -
2QFA
-
INCE_HUMAN
C:
[22-40]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
-
C
----------------
N
M
D
-
N
-
K
D
L
V
W
L
E
E
I
Q
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
21.94
22%
-96
- C10 -
2RO3
-
ABH_BACSU
A:
[1-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
S
I
G
V
V
R
K
V
D
E
L
G
R
I
-
V
-
M
---
P
I
E
---
L
R
R
A
L
D
----------------
I
A
I
K
D
S
I
----------
E
F
F
V
D
G
D
-------
K
I
I
L
K
K
Y
K
P
H
G
V
-
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
21.82
22%
-
- C2 -
3K2T
-
?
A:
[48-56]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
G
K
Y
G
L
I
E
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
21.75
11%
-1
- C9 -
2V0X
-
LAP2A_MOUSE
A:
[465-685]
------------------------------------------------------------------------------------------------------------------------------------H
S
L
T
T
LGV
E
P
S
F
P
--
L
H
E
S
I
L
K
V
V
E
E
E
W
Q
Q
I
D
R
Q
L
P
S
V
A
C
R
----
Y
P
V
S
-
S
--
I
E
A
-
A
R
I
L
SVPK
V
--
D
D
E
I
L
G
F
I
S
S
T
----
E
S
C
D
K
H
L
D
L
A
L
C
R
S
Y
E
A
A
A
S
A
L
Q
I
A
A
H
T
-
A
-
F
---
V
A
K
---
S
L
Q
A
D
I
----------------
S
Q
A
A
Q
I
I
N
S
DPSD
A
Q
Q
A
L
R
I
L
N
R
T
Y
D
A
A
---
S
Y
L
C
D
A
A
F
D
E
V
R
M
S
A
C
A
M
G
----------------
S
S
T
M
G
-
R
R
Y
L
W
L
K
D
C
K
I
S
P
A
S
K
N
K
L
T
V
APFKGGTLFGGEVHKV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
21.53
33%
0
* C10 *
2VAY
1
B:
[1-21]
----------------------------------------------------------------------------------------------------------------------------------------------
K
F
Y
--
A
T
F
L
I
Q
E
H
F
R
K
F
M
K
R
Q
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------